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Search of human proteins with 239756161
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756161 PREDICTED: hypothetical protein [Homo sapiens]
(229 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756161 PREDICTED: hypothetical protein [Homo sapiens] 496 e-141
gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo ... 481 e-136
gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo ... 480 e-136
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 40 0.001
gi|62122917 filaggrin family member 2 [Homo sapiens] 33 0.16
gi|133922582 zinc finger protein 358 [Homo sapiens] 32 0.35
gi|134133226 protein expressed in prostate, ovary, testis, and p... 32 0.45
gi|153791352 prostate, ovary, testis expressed protein on chromo... 32 0.45
gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo sap... 32 0.45
gi|210031154 zinc finger protein 541 [Homo sapiens] 32 0.59
gi|154937346 coiled-coil domain containing 129 [Homo sapiens] 32 0.59
gi|58331148 matrix metalloproteinase 11 preproprotein [Homo sapi... 31 1.0
gi|33519444 amiloride-sensitive cation channel 4 isoform 2 [Homo... 31 1.0
gi|33519442 amiloride-sensitive cation channel 4 isoform 1 [Homo... 31 1.0
gi|239754370 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239748924 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|239742946 PREDICTED: hypothetical protein [Homo sapiens] 30 1.3
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 30 1.3
gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo... 30 1.3
gi|31317307 proprotein convertase subtilisin/kexin type 9 prepro... 29 2.9
gi|31543543 retinoic acid induced 17 [Homo sapiens] 29 2.9
gi|108773804 Fraser syndrome 1 [Homo sapiens] 29 3.8
gi|217330559 unc-51-like kinase 2 [Homo sapiens] 28 5.0
gi|217330557 unc-51-like kinase 2 [Homo sapiens] 28 5.0
gi|110832843 TBP-associated factor 4 [Homo sapiens] 28 5.0
gi|4507847 upstream stimulatory factor 2 isoform 1 [Homo sapiens] 28 5.0
gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens] 28 5.0
gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens] 28 5.0
gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens] 28 5.0
gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens] 28 5.0
>gi|239756161 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 496 bits (1278), Expect = e-141
Identities = 229/229 (100%), Positives = 229/229 (100%)
Query: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP
Sbjct: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
Query: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD
Sbjct: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS
Sbjct: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
Query: 181 TSGQPSLRKSHGHWAAGTARGQTLTVEATALDLGLPPVLSPPYDFVQPA 229
TSGQPSLRKSHGHWAAGTARGQTLTVEATALDLGLPPVLSPPYDFVQPA
Sbjct: 181 TSGQPSLRKSHGHWAAGTARGQTLTVEATALDLGLPPVLSPPYDFVQPA 229
>gi|239750685 PREDICTED: hypothetical protein XP_002347506 [Homo
sapiens]
Length = 684
Score = 481 bits (1237), Expect = e-136
Identities = 229/259 (88%), Positives = 229/259 (88%), Gaps = 30/259 (11%)
Query: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP
Sbjct: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
Query: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD
Sbjct: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS
Sbjct: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
Query: 181 TSGQPSLRKSHGHWAAGTAR------------------------------GQTLTVEATA 210
TSGQPSLRKSHGHWAAGTAR GQTLTVEATA
Sbjct: 181 TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA 240
Query: 211 LDLGLPPVLSPPYDFVQPA 229
LDLGLPPVLSPPYDFVQPA
Sbjct: 241 LDLGLPPVLSPPYDFVQPA 259
>gi|239744995 PREDICTED: hypothetical protein XP_002343325 [Homo
sapiens]
Length = 909
Score = 480 bits (1235), Expect = e-136
Identities = 228/259 (88%), Positives = 229/259 (88%), Gaps = 30/259 (11%)
Query: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP
Sbjct: 1 MGWPSFCQAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHP 60
Query: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD
Sbjct: 61 VQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQD 120
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS
Sbjct: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRS 180
Query: 181 TSGQPSLRKSHGHWAAGTAR------------------------------GQTLTVEATA 210
TSGQPSLRKSHGHWAAGTAR GQTLTVEATA
Sbjct: 181 TSGQPSLRKSHGHWAAGTARGCFHQSLSTVQTCPRLVPQQPSPTELEPLGGQTLTVEATA 240
Query: 211 LDLGLPPVLSPPYDFVQPA 229
LDLG+PPVLSPPYDFVQPA
Sbjct: 241 LDLGMPPVLSPPYDFVQPA 259
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 40.4 bits (93), Expect = 0.001
Identities = 55/206 (26%), Positives = 83/206 (40%), Gaps = 25/206 (12%)
Query: 2 GWPSFCQAAWDSGAVSSEQESRT--------NCPRAACTNEGSTPAKLILERRSCGRVAL 53
G P+ + AW++ AV+ E+ + P C T L + + G +A
Sbjct: 782 GTPATKEGAWEAMAVAPEEPPPSAGEDIVGDTAPPDLCDPGSLTGDASPLSQDAKGMIAE 841
Query: 54 VIRHLHPVQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQK-ARAFSAPRPLSCAG 112
R + P +PAP A + P C P L G ARD Q +++ AP A
Sbjct: 842 GPRDSALAEAPEGLSPAPPARSEEP-CEQPLLVHPSGDHARDAQDPSQSLGAPE---AAE 897
Query: 113 WVPARLQDCC-RHHPCGCSFQKP-QAGDDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRS 170
PA + D HP G + P + +D A + PG P + R
Sbjct: 898 RPPAPVLDMAPAGHPEGDAEPSPGERVEDAAAPKAPG-------PSPAKEKIGSLRKVDR 950
Query: 171 GYIGPQRQRSTSGQP---SLRKSHGH 193
G+ +R+RS+SG+P S K+ GH
Sbjct: 951 GHYRSRRERSSSGEPARESRSKTEGH 976
>gi|62122917 filaggrin family member 2 [Homo sapiens]
Length = 2391
Score = 33.5 bits (75), Expect = 0.16
Identities = 33/105 (31%), Positives = 40/105 (38%), Gaps = 12/105 (11%)
Query: 112 GWVPARLQDCCRHHPCGCSFQKPQAGDD------GAHGEIPGSCSCTLAPRQSYWHCH-- 163
G + + D RH G Q Q G +H E S + A H H
Sbjct: 2145 GTIHGQTGDTTRHGQSGHG-QSTQTGSRTTGRQRSSHSESSDSEVHSEASPTHSGHTHSQ 2203
Query: 164 -GSRHTRSGYIGPQRQRSTSGQPSLRKSHGHWAAG--TARGQTLT 205
GSRH +SG G RQ +T GQ H H+ G T RG T
Sbjct: 2204 AGSRHGQSGSSGHGRQGTTHGQTGDTTRHAHYGYGQSTQRGSRTT 2248
Score = 27.7 bits (60), Expect = 8.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 161 HCHG---SRHTRSGYIGPQRQRSTSGQPSLRKSHGHWAAG 197
H HG S+H +S I P+R +T GQ H H+ G
Sbjct: 1672 HTHGQAGSQHGQSESIVPERHGTTHGQTGDTTRHAHYHHG 1711
>gi|133922582 zinc finger protein 358 [Homo sapiens]
Length = 568
Score = 32.3 bits (72), Expect = 0.35
Identities = 55/202 (27%), Positives = 77/202 (38%), Gaps = 43/202 (21%)
Query: 32 TNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMAILQRPGCGGPPLAQAVGL 91
T+ G P K + + G+ + +++HL G + P P P CG +A G
Sbjct: 256 THGGPRPHKCPVCAKGFGQGSALLKHLRTHTG---ERPYPC-----PQCG-----KAFGQ 302
Query: 92 AARDHQKARAFSAPRPLSCAGWVPARLQDCCRHHPCGCSFQKPQAGDDGAH-----GEIP 146
++ Q R +A RP C CG +F Q+ + H GE P
Sbjct: 303 SSALLQHQRTHTAERPYRCPH--------------CGKAFG--QSSNLQHHLRIHTGERP 346
Query: 147 GSCS-CTLAPRQS-----YWHCH-GSRHTRSGYIGPQRQRSTSGQPSLRKSHGHWAAGTA 199
+C C+ A QS + H H G R R G +++S R G AA A
Sbjct: 347 YACPHCSKAFGQSSALLQHLHVHSGERPYRCQLCGKAFGQASSLTKHKRVHEG--AAAAA 404
Query: 200 RGQTLTVEATALDLGLPPVLSP 221
A A LGL P LSP
Sbjct: 405 AAAAAAAAAAAAGLGLGPGLSP 426
>gi|134133226 protein expressed in prostate, ovary, testis, and
placenta 2 [Homo sapiens]
Length = 1075
Score = 32.0 bits (71), Expect = 0.45
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYW--HCHG-SRHTRSGYIGPQR 177
CCR PC K G G H + S TL + W HC R + +G
Sbjct: 28 CCRCFPCYRESGKSNVGTSGDHDD---SAMKTLRSKMGKWCHHCFPCCRGSGKSNVGASG 84
Query: 178 QRSTSGQPSLRKSHGHW 194
S +LR G W
Sbjct: 85 DHDDSAMKTLRNKMGKW 101
>gi|153791352 prostate, ovary, testis expressed protein on
chromosome 2 [Homo sapiens]
Length = 1075
Score = 32.0 bits (71), Expect = 0.45
Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 6/77 (7%)
Query: 121 CCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAPRQSYW--HCHG-SRHTRSGYIGPQR 177
CCR PC K G G H + S TL + W HC R + +G
Sbjct: 28 CCRCFPCCRESGKSNVGTSGDHDD---SAMKTLRSKMGKWCRHCFPCCRGSGKSNVGASG 84
Query: 178 QRSTSGQPSLRKSHGHW 194
S +LR G W
Sbjct: 85 DHDDSAMKTLRNKMGKW 101
>gi|5802982 proline-rich nuclear receptor coactivator 1 [Homo
sapiens]
Length = 327
Score = 32.0 bits (71), Expect = 0.45
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 12/96 (12%)
Query: 60 PVQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQ 119
P P +APA + GG P A A + +K + ++P AG +P+R
Sbjct: 66 PCLTPQPRAPAALPNRSLAVAGGTPRA-----APKKRRKKKVRASP-----AGQLPSRFH 115
Query: 120 DCCRHHPCGCSFQKPQAGDDGAHGEIPGSCSCTLAP 155
+H P + P G GA E+PG + LAP
Sbjct: 116 QYQQHRPSLEGGRSPATGPSGAQ-EVPGP-AAALAP 149
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 31.6 bits (70), Expect = 0.59
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 58 LHPVQGPWTQAPAPMAILQRPGCGGPPLAQAVGLAAR 94
L P+QGPW Q P P+A GP +A G AR
Sbjct: 590 LRPLQGPWPQQPPPLAPAVDSLHAGPGNPEAEGSPAR 626
>gi|154937346 coiled-coil domain containing 129 [Homo sapiens]
Length = 1044
Score = 31.6 bits (70), Expect = 0.59
Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 13/78 (16%)
Query: 81 GGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQDCCRHHP-CGCSFQKPQAGDD 139
G PL ++V L + FS+ P+ +PA CC HHP C Q P
Sbjct: 775 GPQPLTKSVSLDS-------GFSSICPMGTCHAIPAHCCICCHHHPHCHGERQSP----- 822
Query: 140 GAHGEIPGSCSCTLAPRQ 157
G + C C+L Q
Sbjct: 823 GPEPSVCRHCLCSLTGHQ 840
>gi|58331148 matrix metalloproteinase 11 preproprotein [Homo
sapiens]
Length = 488
Score = 30.8 bits (68), Expect = 1.0
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 60 PVQGPWTQ-APAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPR 106
P P TQ AP P + L+ P CG P + GL+AR+ QK S R
Sbjct: 59 PAPAPATQEAPRPASSLRPPRCGVPDPSD--GLSARNRQKRFVLSGGR 104
>gi|33519444 amiloride-sensitive cation channel 4 isoform 2 [Homo
sapiens]
Length = 647
Score = 30.8 bits (68), Expect = 1.0
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 84 PLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQDCCRHHPCGCSFQKPQAGDDGA-- 141
PL +A GL AR+ Q A ++P S G +P + + ++ +AGD+ +
Sbjct: 101 PLGRAPGLLAREGQGREALASP---SSRGQMPIEIVCKIKFAEEDAKPKEKEAGDEQSLL 157
Query: 142 HGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRSTSGQPSLRKSHG---HWAAGT 198
PG+ LA S HG R+ GP R T +L S + AAG
Sbjct: 158 GAVAPGAAPRDLATFASTSTLHGL--GRACGPGPHGLRRTLWALALLTSLAAFLYQAAGL 215
Query: 199 ARGQTLTVEATALDLGLP-PVLSPP 222
ARG A+D P PV P
Sbjct: 216 ARGYLTRPHLVAMDPAAPAPVAGFP 240
>gi|33519442 amiloride-sensitive cation channel 4 isoform 1 [Homo
sapiens]
Length = 666
Score = 30.8 bits (68), Expect = 1.0
Identities = 42/145 (28%), Positives = 59/145 (40%), Gaps = 11/145 (7%)
Query: 84 PLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQDCCRHHPCGCSFQKPQAGDDGA-- 141
PL +A GL AR+ Q A ++P S G +P + + ++ +AGD+ +
Sbjct: 101 PLGRAPGLLAREGQGREALASP---SSRGQMPIEIVCKIKFAEEDAKPKEKEAGDEQSLL 157
Query: 142 HGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRSTSGQPSLRKSHG---HWAAGT 198
PG+ LA S HG R+ GP R T +L S + AAG
Sbjct: 158 GAVAPGAAPRDLATFASTSTLHGL--GRACGPGPHGLRRTLWALALLTSLAAFLYQAAGL 215
Query: 199 ARGQTLTVEATALDLGLP-PVLSPP 222
ARG A+D P PV P
Sbjct: 216 ARGYLTRPHLVAMDPAAPAPVAGFP 240
>gi|239754370 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 30.4 bits (67), Expect = 1.3
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 19 EQESRTNCPRAA-CTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMAILQR 77
E+E RT AA C + PA R+ R + R L P W PAP
Sbjct: 133 EREVRTPSGGAAPCVPDEPAPAA-----RTRRRDPSLRRTLAPCAPAW---PAP------ 178
Query: 78 PGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPAR 117
P C PP LAAR + RA++A C P +
Sbjct: 179 PPCPAPPSRSKPALAARQQPQRRAWAAAVATQCPHRAPTQ 218
>gi|239748924 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 30.4 bits (67), Expect = 1.3
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 19 EQESRTNCPRAA-CTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMAILQR 77
E+E RT AA C + PA R+ R + R L P W PAP
Sbjct: 133 EREVRTPSGGAAPCVPDEPAPAA-----RTRRRDPSLRRTLAPCAPAW---PAP------ 178
Query: 78 PGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPAR 117
P C PP LAAR + RA++A C P +
Sbjct: 179 PPCPAPPSRSKPALAARQQPQRRAWAAAVATQCPHRAPTQ 218
>gi|239742946 PREDICTED: hypothetical protein [Homo sapiens]
Length = 435
Score = 30.4 bits (67), Expect = 1.3
Identities = 31/100 (31%), Positives = 39/100 (39%), Gaps = 15/100 (15%)
Query: 19 EQESRTNCPRAA-CTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMAILQR 77
E+E RT AA C + PA R+ R + R L P W PAP
Sbjct: 133 EREVRTPSGGAAPCVPDEPAPAA-----RTRRRDPSLRRTLAPCAPAW---PAP------ 178
Query: 78 PGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPAR 117
P C PP LAAR + RA++A C P +
Sbjct: 179 PPCPAPPSRSKPALAARQQPQRRAWAAAVATQCPHRAPTQ 218
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 30.4 bits (67), Expect = 1.3
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 8 QAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQ 67
+ +W G S+ R P + +P+K +R + A + H P T+
Sbjct: 669 KVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKR--KRTPSDKSAHTVEH----GSPRTR 722
Query: 68 APAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAG 112
P P RP G P +A LAA +ARA +APRPL G
Sbjct: 723 DPTP-----RPP--GLP-EEATALAAPSPPRARARAAPRPLGAHG 759
>gi|33598937 scavenger receptor class F, member 2 isoform 2 [Homo
sapiens]
Length = 865
Score = 30.4 bits (67), Expect = 1.3
Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 14/105 (13%)
Query: 8 QAAWDSGAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQ 67
+ +W G S+ R P + +P+K +R + A + H P T+
Sbjct: 664 KVSWIHGKHSAAAAGRAPSPPPPGSEAAPSPSKR--KRTPSDKSAHTVEH----GSPRTR 717
Query: 68 APAPMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAG 112
P P RP G P +A LAA +ARA +APRPL G
Sbjct: 718 DPTP-----RPP--GLP-EEATALAAPSPPRARARAAPRPLGAHG 754
>gi|31317307 proprotein convertase subtilisin/kexin type 9
preproprotein [Homo sapiens]
Length = 692
Score = 29.3 bits (64), Expect = 2.9
Identities = 50/222 (22%), Positives = 69/222 (31%), Gaps = 42/222 (18%)
Query: 2 GWPSFCQAAWDSGAVSSEQESRTNCPRAACTNE------GSTPAKLILERRSCGRVALVI 55
GW FC+ W A S T R A E S K ER LV
Sbjct: 452 GWQLFCRTVW--SAHSGPTRMATAVARCAPDEELLSCSSFSRSGKRRGERMEAQGGKLVC 509
Query: 56 RHLHPVQGPWTQAPAPMAILQRPGCG---GPPLAQAVGLAARDHQKARAFSA-------- 104
R + G A A +L + C PP ++G HQ+ +
Sbjct: 510 RAHNAFGGEGVYAIARCCLLPQANCSVHTAPPAEASMGTRVHCHQQGHVLTGCSSHWEVE 569
Query: 105 -----------PR--PLSCAGWVPARLQDCCRHHPCGCSFQKPQAGDDGAHGEIPGSC-- 149
PR P C G A + C H P G + + G ++ +C
Sbjct: 570 DLGTHKPPVLRPRGQPNQCVGHREASIHASCCHAP-GLECKVKEHGIPAPQEQVTVACEE 628
Query: 150 -----SCTLAPRQSYWHCHGSRHTRSGYIGPQRQRSTSGQPS 186
C+ P S H G+ + + R ST+G S
Sbjct: 629 GWTLTGCSALPGTS--HVLGAYAVDNTCVVRSRDVSTTGSTS 668
>gi|31543543 retinoic acid induced 17 [Homo sapiens]
Length = 1067
Score = 29.3 bits (64), Expect = 2.9
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 6/61 (9%)
Query: 169 RSGYIGPQRQRSTSGQPSLRKSHGHWAAGTARGQTLTVEATALDLGLPPVLSPPYDFVQP 228
++G P Q+S G+P+ S G A+ +G+PP PP DF QP
Sbjct: 226 KAGPAQPYIQQSMYGRPNYPGSGGFGASYPGGPNA------PAGMGIPPHTRPPADFTQP 279
Query: 229 A 229
A
Sbjct: 280 A 280
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 28.9 bits (63), Expect = 3.8
Identities = 32/109 (29%), Positives = 35/109 (32%), Gaps = 11/109 (10%)
Query: 80 CGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVP--ARLQDCCRHHPCGCSFQKPQAG 137
C G A A G H + S P P C P A Q C CG F
Sbjct: 593 CPGGYYADATGRCKVCHNSCASCSGPTPSHCTACSPPKALRQGHCLPR-CGEGFY----S 647
Query: 138 DDGAHGEIPGSCSCTLAPRQSYWHCHGSRHTRSGYIGPQRQRSTSGQPS 186
D G SC + P S HC G + G Q S G PS
Sbjct: 648 DHGVCKACHSSCLACMGPAPS--HCTGCKKPEEGL--QVEQLSDVGIPS 692
>gi|217330559 unc-51-like kinase 2 [Homo sapiens]
Length = 1036
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 70 APMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQDCCRHHPCG 128
+PM L+ C P A + R + +P PL G +P + CC HP G
Sbjct: 442 SPMGFLRPGSCSPVPADTAQTVGRRLSTGSSRPYSPSPL--VGTIPEQFSQCCCGHPQG 498
>gi|217330557 unc-51-like kinase 2 [Homo sapiens]
Length = 1036
Score = 28.5 bits (62), Expect = 5.0
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 70 APMAILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRPLSCAGWVPARLQDCCRHHPCG 128
+PM L+ C P A + R + +P PL G +P + CC HP G
Sbjct: 442 SPMGFLRPGSCSPVPADTAQTVGRRLSTGSSRPYSPSPL--VGTIPEQFSQCCCGHPQG 498
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 28.5 bits (62), Expect = 5.0
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 60 PVQGPWTQAPAPMAILQRPG--CGGPPLAQAVGLAARDHQKARAFSAPRPLSCAG 112
P P PAP + + PG G P A AV A A +AP P AG
Sbjct: 266 PAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAG 320
>gi|4507847 upstream stimulatory factor 2 isoform 1 [Homo sapiens]
Length = 346
Score = 28.5 bits (62), Expect = 5.0
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 64 PWTQAPAPMAILQRP-GCGGPPLAQAVGLAAR 94
P AP P+A++Q P GG P A+AV AR
Sbjct: 135 PGPAAPFPLAVIQNPFSNGGSPAAEAVSGEAR 166
>gi|42740899 CTAGE family, member 5 isoform 3 [Homo sapiens]
Length = 761
Score = 28.5 bits (62), Expect = 5.0
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 14 GAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMA 73
G++ SE ES N + N + L E + G V L P++GP A
Sbjct: 610 GSMPSEMESSRNDTKDDLGNLNVPDSSLPAENEATGP-GFVPPPLAPIRGPLFPVDARGP 668
Query: 74 ILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRP 107
L+R PP A+ A+RD+ F P P
Sbjct: 669 FLRRGPPFPPPPPGAMFGASRDYFPPGDFPGPPP 702
>gi|42740897 CTAGE family, member 5 isoform 1 [Homo sapiens]
Length = 804
Score = 28.5 bits (62), Expect = 5.0
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 14 GAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMA 73
G++ SE ES N + N + L E + G V L P++GP A
Sbjct: 653 GSMPSEMESSRNDTKDDLGNLNVPDSSLPAENEATGP-GFVPPPLAPIRGPLFPVDARGP 711
Query: 74 ILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRP 107
L+R PP A+ A+RD+ F P P
Sbjct: 712 FLRRGPPFPPPPPGAMFGASRDYFPPGDFPGPPP 745
>gi|42740901 CTAGE family, member 5 isoform 4 [Homo sapiens]
Length = 775
Score = 28.5 bits (62), Expect = 5.0
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 14 GAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMA 73
G++ SE ES N + N + L E + G V L P++GP A
Sbjct: 624 GSMPSEMESSRNDTKDDLGNLNVPDSSLPAENEATGP-GFVPPPLAPIRGPLFPVDARGP 682
Query: 74 ILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRP 107
L+R PP A+ A+RD+ F P P
Sbjct: 683 FLRRGPPFPPPPPGAMFGASRDYFPPGDFPGPPP 716
>gi|42740905 CTAGE family, member 5 isoform 2 [Homo sapiens]
Length = 792
Score = 28.5 bits (62), Expect = 5.0
Identities = 27/94 (28%), Positives = 38/94 (40%), Gaps = 1/94 (1%)
Query: 14 GAVSSEQESRTNCPRAACTNEGSTPAKLILERRSCGRVALVIRHLHPVQGPWTQAPAPMA 73
G++ SE ES N + N + L E + G V L P++GP A
Sbjct: 641 GSMPSEMESSRNDTKDDLGNLNVPDSSLPAENEATGP-GFVPPPLAPIRGPLFPVDARGP 699
Query: 74 ILQRPGCGGPPLAQAVGLAARDHQKARAFSAPRP 107
L+R PP A+ A+RD+ F P P
Sbjct: 700 FLRRGPPFPPPPPGAMFGASRDYFPPGDFPGPPP 733
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.133 0.456
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,425,604
Number of Sequences: 37866
Number of extensions: 616897
Number of successful extensions: 1701
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 1676
Number of HSP's gapped (non-prelim): 66
length of query: 229
length of database: 18,247,518
effective HSP length: 99
effective length of query: 130
effective length of database: 14,498,784
effective search space: 1884841920
effective search space used: 1884841920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.