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Search of human proteins with 239756142
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756142 PREDICTED: hypothetical protein XP_002344837 [Homo
sapiens]
(208 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756142 PREDICTED: hypothetical protein XP_002344837 [Homo ... 433 e-122
gi|239750701 PREDICTED: hypothetical protein [Homo sapiens] 433 e-122
gi|239745009 PREDICTED: hypothetical protein XP_002343330 [Homo ... 227 6e-60
gi|239751163 PREDICTED: hypothetical protein [Homo sapiens] 36 0.027
gi|239745648 PREDICTED: similar to predicted protein [Homo sapiens] 36 0.027
gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens] 35 0.059
gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens] 33 0.13
gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sap... 32 0.29
gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sap... 32 0.29
gi|100816392 far upstream element (FUSE) binding protein 3 [Homo... 31 0.65
gi|190341091 feline leukemia virus subgroup C cellular receptor ... 31 0.65
gi|169218320 PREDICTED: similar to BCL2-associated transcription... 31 0.85
gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens] 31 0.85
gi|117938254 BCL2-associated transcription factor 1 isoform 3 [H... 31 0.85
gi|117938251 BCL2-associated transcription factor 1 isoform 2 [H... 31 0.85
gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Hom... 31 0.85
gi|134031945 SCO-spondin [Homo sapiens] 30 1.1
gi|222831592 transmembrane protease, serine 7 [Homo sapiens] 30 1.5
gi|239756568 PREDICTED: similar to BCL2-associated transcription... 30 1.5
gi|4557743 Mediterranean fever protein [Homo sapiens] 30 1.9
gi|239752563 PREDICTED: hypothetical protein [Homo sapiens] 30 1.9
gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens] 29 2.5
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 29 3.2
gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens] 29 3.2
gi|219879806 TRAF-type zinc finger domain containing 1 [Homo sap... 28 4.2
gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens] 28 4.2
gi|39995080 hypothetical protein LOC79567 [Homo sapiens] 28 4.2
gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens] 28 4.2
gi|163965366 nascent polypeptide-associated complex alpha subuni... 28 4.2
gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo... 28 5.5
>gi|239756142 PREDICTED: hypothetical protein XP_002344837 [Homo
sapiens]
Length = 208
Score = 433 bits (1114), Expect = e-122
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK
Sbjct: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
Query: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP 120
PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP
Sbjct: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP 120
Query: 121 SMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGH 180
SMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGH
Sbjct: 121 SMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGH 180
Query: 181 PSEITLTMNGYLSKITAVLLWVQLAQFC 208
PSEITLTMNGYLSKITAVLLWVQLAQFC
Sbjct: 181 PSEITLTMNGYLSKITAVLLWVQLAQFC 208
>gi|239750701 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 433 bits (1114), Expect = e-122
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK
Sbjct: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
Query: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP 120
PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP
Sbjct: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP 120
Query: 121 SMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGH 180
SMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGH
Sbjct: 121 SMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGH 180
Query: 181 PSEITLTMNGYLSKITAVLLWVQLAQFC 208
PSEITLTMNGYLSKITAVLLWVQLAQFC
Sbjct: 181 PSEITLTMNGYLSKITAVLLWVQLAQFC 208
>gi|239745009 PREDICTED: hypothetical protein XP_002343330 [Homo
sapiens]
Length = 283
Score = 227 bits (578), Expect = 6e-60
Identities = 132/217 (60%), Positives = 142/217 (65%), Gaps = 26/217 (11%)
Query: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK
Sbjct: 1 MAWTVQRPLVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFK 60
Query: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKP 120
PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSM T P
Sbjct: 61 PQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCWLGPAVLDPSM----CTDRPARDVP 116
Query: 121 SMKGHPSAIAPSVNGHP---SEITPSMNGHASELKPSRNG------CSSEITPSVNGH-- 169
++ H A AP P + T HA P+R C + P+V+G
Sbjct: 117 AV--HGKAPAPRRTVQPVMCLQCTGKPLHHAGPSSPARESPCTTQDCPARDVPAVHGKAP 174
Query: 170 -PSEITQPVNG--------HPSEITLTMNGYLSKITA 197
P QPV H + ++ N Y S I A
Sbjct: 175 APHRTVQPVMCLQCTGKPLHHTGLSSPRNEYCSAIAA 211
>gi|239751163 PREDICTED: hypothetical protein [Homo sapiens]
Length = 193
Score = 35.8 bits (81), Expect = 0.027
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 97 LGPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRN 156
LG + P + S+G L P+ +G P P+ +G P P+ +G P+ +
Sbjct: 120 LGQLLAPPDLCDPTSSGCPDLCDPTSRGSPDLCDPTSSGSPDLCAPTSSGSPDLCAPTSS 179
Query: 157 GCSSEITPSVNGHP 170
G P+ +G P
Sbjct: 180 GSPDLCAPTSSGSP 193
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 117 LLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQP 176
L P+ G P P+ G P P+ +G P+ +G P+ +G P
Sbjct: 129 LCDPTSSGCPDLCDPTSRGSPDLCDPTSSGSPDLCAPTSSGSPDLCAPTSSGSPDLCAPT 188
Query: 177 VNGHP 181
+G P
Sbjct: 189 SSGSP 193
>gi|239745648 PREDICTED: similar to predicted protein [Homo sapiens]
Length = 193
Score = 35.8 bits (81), Expect = 0.027
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 97 LGPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRN 156
LG + P + S+G L P+ +G P P+ +G P P+ +G P+ +
Sbjct: 120 LGQLLAPPDLCDPTSSGCPDLCDPTSRGSPDLCDPTSSGSPDLCAPTSSGSPDLCAPTSS 179
Query: 157 GCSSEITPSVNGHP 170
G P+ +G P
Sbjct: 180 GSPDLCAPTSSGSP 193
Score = 30.4 bits (67), Expect = 1.1
Identities = 16/65 (24%), Positives = 25/65 (38%)
Query: 117 LLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQP 176
L P+ G P P+ G P P+ +G P+ +G P+ +G P
Sbjct: 129 LCDPTSSGCPDLCDPTSRGSPDLCDPTSSGSPDLCAPTSSGSPDLCAPTSSGSPDLCAPT 188
Query: 177 VNGHP 181
+G P
Sbjct: 189 SSGSP 193
>gi|239749931 PREDICTED: FLJ43861 protein [Homo sapiens]
Length = 642
Score = 34.7 bits (78), Expect = 0.059
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 108 VTPS-TGGSILLKPSMKGHPSAIA-PSVNGHPSEITPSMNGHASELKPSRNGCSSEITPS 165
V+PS S L PS++ H S+ A S H S ++PS H+S PS SS PS
Sbjct: 139 VSPSHRSHSSLALPSLRSHFSSTALHSCGSHFSPVSPSHRSHSSLALPSHRSHSSLALPS 198
Query: 166 VNGH 169
+ H
Sbjct: 199 LRSH 202
Score = 32.3 bits (72), Expect = 0.29
Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 125 HPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGHPSEI 184
H S ++PS H S PS+ H S + + C S +P H S + + H S
Sbjct: 135 HFSPVSPSHRSHSSLALPSLRSHFS--STALHSCGSHFSPVSPSHRSHSSLALPSHRSHS 192
Query: 185 TLTMNGYLSKITAVLL 200
+L + S ++ L
Sbjct: 193 SLALPSLRSHFSSTAL 208
Score = 32.0 bits (71), Expect = 0.38
Identities = 22/74 (29%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 118 LKPSMKGHPSAIAPSVNGHPSEITPSMNGHASE------------LKPSRNGCSSEITPS 165
+ PS + H S PS H S PS+ H S + PS SS PS
Sbjct: 173 VSPSHRSHSSLALPSHRSHSSLALPSLRSHFSSTALHSCGSHFSPVSPSHRSHSSLALPS 232
Query: 166 VNGHPSEITQPVNG 179
+ H S P G
Sbjct: 233 LRSHFSSTALPSCG 246
>gi|37595528 polyhomeotic-like 2 isoform a [Homo sapiens]
Length = 858
Score = 33.5 bits (75), Expect = 0.13
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 13/95 (13%)
Query: 111 STGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHP 170
S S+ L+PS + H + P P + P+ N H KP G S + P P
Sbjct: 380 SVSPSVALQPSSEAHAMPLGPVTPALPLQC-PTANLH----KP---GGSQQCHP-----P 426
Query: 171 SEITQPVNGHPSEITLTMNGYLSKITAVLLWVQLA 205
+ T P NGHP + T +AV+L +Q A
Sbjct: 427 TPDTGPQNGHPEGVPHTPQRRFQHTSAVILQLQPA 461
>gi|116256445 nuclear receptor co-repressor 2 isoform 2 [Homo sapiens]
Length = 2462
Score = 32.3 bits (72), Expect = 0.29
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 112 TGGSILLKPSMK-GHPSAIAPSVNGHPSEITPSMNGHASELK-PSRNGCSSEITPSVNGH 169
TG + L KP + G A +PS P + P ++GHA+ + P++N +P
Sbjct: 1946 TGHAFLAKPPARSGLEPASSPSKGSEPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAP 2005
Query: 170 PSEITQP 176
P+ + P
Sbjct: 2006 PASASDP 2012
Score = 28.5 bits (62), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 146 GHASELKP-SRNGCSSEITPSVNGHPSEITQPVNGH 180
GHA KP +R+G +PS P + PV+GH
Sbjct: 1947 GHAFLAKPPARSGLEPASSPSKGSEPRPLVPPVSGH 1982
>gi|116256453 nuclear receptor co-repressor 2 isoform 1 [Homo sapiens]
Length = 2524
Score = 32.3 bits (72), Expect = 0.29
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 112 TGGSILLKPSMK-GHPSAIAPSVNGHPSEITPSMNGHASELK-PSRNGCSSEITPSVNGH 169
TG + L KP + G A +PS P + P ++GHA+ + P++N +P
Sbjct: 1962 TGHAFLAKPPARSGLEPASSPSKGSEPRPLVPPVSGHATIARTPAKNLAPHHASPDPPAP 2021
Query: 170 PSEITQP 176
P+ + P
Sbjct: 2022 PASASDP 2028
Score = 28.5 bits (62), Expect = 4.2
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 146 GHASELKP-SRNGCSSEITPSVNGHPSEITQPVNGH 180
GHA KP +R+G +PS P + PV+GH
Sbjct: 1963 GHAFLAKPPARSGLEPASSPSKGSEPRPLVPPVSGH 1998
>gi|100816392 far upstream element (FUSE) binding protein 3 [Homo
sapiens]
Length = 572
Score = 31.2 bits (69), Expect = 0.65
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 130 APSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGHPSEIT 185
AP G P H + P +GC + VNG+P + PV+G P+ +T
Sbjct: 432 APGAFGQSPFSQPPAPPHQNTFPPRSSGCFPNMAAKVNGNPH--STPVSGPPAFLT 485
>gi|190341091 feline leukemia virus subgroup C cellular receptor
family, member 2 [Homo sapiens]
Length = 526
Score = 31.2 bits (69), Expect = 0.65
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 23/76 (30%)
Query: 109 TPSTGGSILLKPSMKGHPSAIAPSVNGHPS-EITPSMNGHASELKPSRNGCSSEITPSVN 167
TP ++ PS+ HPS V+ HPS I PS++ H PS +
Sbjct: 14 TPVPESALQADPSVSVHPS-----VSVHPSVSINPSVSVH----------------PSSS 52
Query: 168 GHPSEITQPVN-GHPS 182
HPS + QP HPS
Sbjct: 53 AHPSALAQPSGLAHPS 68
>gi|169218320 PREDICTED: similar to BCL2-associated transcription
factor 1 isoform 2 [Homo sapiens]
Length = 869
Score = 30.8 bits (68), Expect = 0.85
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 84 YSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPS 143
+++S+ SG W G + D S +P + I PS S H ++ TPS
Sbjct: 200 FNKSSATSGDI-WPGLSAYDNSPR-SPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPS 257
Query: 144 MNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGHPS 182
+ H+ + P R+G S S PS+ P++ PS
Sbjct: 258 QHSHSIQHSPERSGSGSVGNGSSRYSPSQ-NSPIHHIPS 295
>gi|239746200 PREDICTED: similar to hCG2001482 [Homo sapiens]
Length = 153
Score = 30.8 bits (68), Expect = 0.85
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 138 SEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGHPS 182
+ ++PS +G ++PS + S + PS + P IT P +G PS
Sbjct: 9 THLSPSSSGATPTIQPSPSSTDSRMIPS-SPQPETITHPSSGSPS 52
>gi|117938254 BCL2-associated transcription factor 1 isoform 3 [Homo
sapiens]
Length = 747
Score = 30.8 bits (68), Expect = 0.85
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 84 YSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPS 143
+++S+ SG W G + D S +P + I PS S H ++ TPS
Sbjct: 202 FNKSSATSGDI-WPGLSAYDNSPR-SPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPS 259
Query: 144 MNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGHPS 182
+ H+ + P R+G S S PS+ P++ PS
Sbjct: 260 QHSHSIQHSPERSGSGSVGNGSSRYSPSQ-NSPIHHIPS 297
>gi|117938251 BCL2-associated transcription factor 1 isoform 2 [Homo
sapiens]
Length = 869
Score = 30.8 bits (68), Expect = 0.85
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 84 YSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPS 143
+++S+ SG W G + D S +P + I PS S H ++ TPS
Sbjct: 200 FNKSSATSGDI-WPGLSAYDNSPR-SPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPS 257
Query: 144 MNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGHPS 182
+ H+ + P R+G S S PS+ P++ PS
Sbjct: 258 QHSHSIQHSPERSGSGSVGNGSSRYSPSQ-NSPIHHIPS 295
>gi|7661958 BCL2-associated transcription factor 1 isoform 1 [Homo
sapiens]
Length = 920
Score = 30.8 bits (68), Expect = 0.85
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 84 YSQSAVGSGCFCWLGPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPS 143
+++S+ SG W G + D S +P + I PS S H ++ TPS
Sbjct: 202 FNKSSATSGDI-WPGLSAYDNSPR-SPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPS 259
Query: 144 MNGHASELKPSRNGCSSEITPSVNGHPSEITQPVNGHPS 182
+ H+ + P R+G S S PS+ P++ PS
Sbjct: 260 QHSHSIQHSPERSGSGSVGNGSSRYSPSQ-NSPIHHIPS 297
>gi|134031945 SCO-spondin [Homo sapiens]
Length = 5147
Score = 30.4 bits (67), Expect = 1.1
Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 3/109 (2%)
Query: 48 RSARGGRQKTPFKPQFLPPHWLCDLEHITEGAGLQCYSQSAVGSGCFCW-LGPAVLDPSM 106
R+ GG P + Q C+L+ E Q S A C CW L P +
Sbjct: 4788 RTCEGGPGVAPCQAQDTEQRQECNLQPCPECPPGQVLSACATSCPCLCWHLQPGAICVQE 4847
Query: 107 WVTPSTG--GSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKP 153
P G G LL P+A + + P +T ++ A EL P
Sbjct: 4848 PCQPGCGCPGGQLLHNGTCVPPTACPCTQHSLPWGLTLTLEEQAQELPP 4896
>gi|222831592 transmembrane protease, serine 7 [Homo sapiens]
Length = 717
Score = 30.0 bits (66), Expect = 1.5
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 9 LVGSQRRQVYRRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFKPQFLPPHW 68
LV + + R SGI Y + +P QK + V V + G G+ +P+ P + PP
Sbjct: 213 LVTFKSPHIRRLSGIRAYFEVIPEQK-CENTVLVKDITGFE---GKISSPYYPSYYPPKC 268
Query: 69 LCDLEHITE----GAGLQCYSQS 87
C + T G L+ Y+ S
Sbjct: 269 KCTWKFQTSLSTLGIALKFYNYS 291
>gi|239756568 PREDICTED: similar to BCL2-associated transcription
factor 1 [Homo sapiens]
Length = 869
Score = 30.0 bits (66), Expect = 1.5
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
Query: 96 WLGPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSR 155
W G + D S +P + I PS S H ++ TPS + H+ + P R
Sbjct: 211 WPGLSAYDXSPR-SPHSPSPIATPPSQSSSCSDAPMLSTVHSAKNTPSQHSHSIQHSPER 269
Query: 156 NGCSSEITPSVNGHPSEITQPVNGHPS 182
+G S S PS+ P++ PS
Sbjct: 270 SGSGSVGNGSSRYSPSQ-NSPIHHIPS 295
>gi|4557743 Mediterranean fever protein [Homo sapiens]
Length = 781
Score = 29.6 bits (65), Expect = 1.9
Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 103 DPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGC---S 159
+P TP G S LK G+P SV G P + S HA E P C S
Sbjct: 276 EPRARPTPDGGASADLKEG-PGNPEH---SVTGRPPDTAASPRCHAQEGDPVDGTCVRDS 331
Query: 160 SEITPSVNGHP 170
+V+GHP
Sbjct: 332 CSFPEAVSGHP 342
>gi|239752563 PREDICTED: hypothetical protein [Homo sapiens]
Length = 343
Score = 29.6 bits (65), Expect = 1.9
Identities = 17/52 (32%), Positives = 23/52 (44%)
Query: 19 RRSGIVQYSQALPNQKSLLDAVAVSESMGRSARGGRQKTPFKPQFLPPHWLC 70
R SG Y + P+ L SE G GG +TP +P+ P +LC
Sbjct: 86 RCSGNESYLWSCPHNGWLSHNCGHSEDAGVICSGGPPRTPIRPRSWPSRFLC 137
>gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens]
Length = 995
Score = 29.3 bits (64), Expect = 2.5
Identities = 27/85 (31%), Positives = 35/85 (41%), Gaps = 9/85 (10%)
Query: 112 TGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGC--SSEITPS---- 165
T S L P K + APS NG P + + + +KP RN C SS S
Sbjct: 42 TDNSSLSPPPAKLSVVSFAPSSNGTPDVTLSLLPSNETGVKPQRNICNLSSICNDSAFFR 101
Query: 166 ---VNGHPSEITQPVNGHPSEITLT 187
+ + E T P N H + TLT
Sbjct: 102 GEIMFQYDKESTVPQNQHITNGTLT 126
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 28.9 bits (63), Expect = 3.2
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 4/80 (5%)
Query: 96 WLGPAVLDPSM----WVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASEL 151
W P+V S+ W +PS G+ S PSA S + +PS + +
Sbjct: 116 WASPSVSGASIPSAFWASPSASGASTPSDSGWASPSASWASTSSDSGWASPSASWTSPSA 175
Query: 152 KPSRNGCSSEITPSVNGHPS 171
+ + S TPS +G S
Sbjct: 176 SCASSSASGASTPSDSGWAS 195
>gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens]
Length = 1003
Score = 28.9 bits (63), Expect = 3.2
Identities = 30/93 (32%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 112 TGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMN--------GHASELKPSRNGC--SSE 161
T S L P K + APS NG P T S+N + + +KP RN C SS
Sbjct: 42 TDNSSLSPPPAKLSVVSFAPSSNGTPEVETTSLNDVTLSLLPSNETGVKPQRNICNLSSI 101
Query: 162 ITPS-------VNGHPSEITQPVNGHPSEITLT 187
S + + E T P N H + TLT
Sbjct: 102 CNDSAFFRGEIMFQYDKESTVPQNQHITNGTLT 134
>gi|219879806 TRAF-type zinc finger domain containing 1 [Homo
sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 4.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 124 GHPSAIAPSVNGHPSEITPSM----NGHASELKPSRNGCSSEITPSVNGHPS 171
GH S I P N +P I PS +G S G +S +TP+ + S
Sbjct: 509 GHVSVIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAANYRS 560
>gi|5729828 TRAF-type zinc finger domain containing 1 [Homo sapiens]
Length = 582
Score = 28.5 bits (62), Expect = 4.2
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 4/52 (7%)
Query: 124 GHPSAIAPSVNGHPSEITPSM----NGHASELKPSRNGCSSEITPSVNGHPS 171
GH S I P N +P I PS +G S G +S +TP+ + S
Sbjct: 509 GHVSVIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAANYRS 560
>gi|39995080 hypothetical protein LOC79567 [Homo sapiens]
Length = 1219
Score = 28.5 bits (62), Expect = 4.2
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 6/73 (8%)
Query: 115 SILLKPSMKGHPSAIAPSVNGHPSEITPSMN-GHA--SELKPSRNGCSSEITPSVNGHPS 171
S+ PS HP AP+ HPS + P+++ GH+ S + + P+ + H
Sbjct: 472 SLAWGPSPPTHP---APTHGEHPSPVPPALDPGHSATSSTLGTTGSVPTSTDPAPSAHLD 528
Query: 172 EITQPVNGHPSEI 184
+ + + PSE+
Sbjct: 529 SVHKSTDSGPSEL 541
>gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens]
Length = 1017
Score = 28.5 bits (62), Expect = 4.2
Identities = 19/52 (36%), Positives = 23/52 (44%)
Query: 112 TGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEIT 163
T S L P K + APS NG P T S+N L PS ++IT
Sbjct: 42 TDNSSLSPPPAKLSVVSFAPSSNGTPEVETTSLNDVTLSLLPSNETEKTKIT 93
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 28.5 bits (62), Expect = 4.2
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 5/73 (6%)
Query: 99 PAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGC 158
PAV PS TP+ + PS KG P+ + P TPS G + PS
Sbjct: 1336 PAVTPPSPKGTPTLPATT---PSSKGGPTTPSSKEGPTPPAATPSHKGGPAMTPPSPK-- 1390
Query: 159 SSEITPSVNGHPS 171
PS G P+
Sbjct: 1391 RGPAIPSPKGDPT 1403
Score = 28.1 bits (61), Expect = 5.5
Identities = 26/94 (27%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 98 GPAVLDPSMWVTPSTGGSILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNG 157
GPA P TP PS KG P+ +P P +TP + P G
Sbjct: 976 GPATPSPKGAPTPPAA----TPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKG 1031
Query: 158 CS---SEITPSVNGHPSEITQPVNGHPSEITLTM 188
S + PS G P+ P G P+ T+
Sbjct: 1032 ASTPPAATPPSPKGSPAATPLP-KGAPTTPAATL 1064
Score = 27.3 bits (59), Expect = 9.4
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 12/87 (13%)
Query: 97 LGPAVLDPSMWVTPSTGGS---ILLKPSMKGHPSAIAPSVNGHPSEITPSMNGHA----- 148
L ++ P++ TPS+ + L P SA P++ P + + +G
Sbjct: 118 LASPMIAPTLKGTPSSSAPLALVALAPHSVQKSSAFPPNLLTSPPSVAVAESGSVITLSA 177
Query: 149 ----SELKPSRNGCSSEITPSVNGHPS 171
SE K + N SE+ P+ G PS
Sbjct: 178 PIAPSEPKTNLNKVPSEVVPNPKGTPS 204
>gi|7662088 Rho guanine nucleotide exchange factor (GEF) 12 [Homo
sapiens]
Length = 1544
Score = 28.1 bits (61), Expect = 5.5
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 121 SMKGHPSAIAPSVNGHPSEITPSMNGHASELKPSRNGCSSEITPSVNGHPSEITQPV 177
+++G P +P + SE+ PS+ GH S + S + +P +G+ IT PV
Sbjct: 143 TVQGRPPG-SPQIPLADSEVEPSVIGHMSPIMTSPH------SPGASGNMERITSPV 192
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,254,000
Number of Sequences: 37866
Number of extensions: 471091
Number of successful extensions: 1428
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 1347
Number of HSP's gapped (non-prelim): 70
length of query: 208
length of database: 18,247,518
effective HSP length: 98
effective length of query: 110
effective length of database: 14,536,650
effective search space: 1599031500
effective search space used: 1599031500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.