Guide to the Human Genome
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Name: LOC100292110 Sequence: fasta or formatted (168aa) NCBI GI: 239756131
Description:

PREDICTED: hypothetical protein XP_002344814

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.9         30           3
 C cysteine            1.2          2           1
 D aspartate           1.8          3           1
 E glutamate           2.4          4           1
 F phenylalanine       1.2          2           1
 G glycine            11.9         20           3
 H histidine           2.4          4           1
 I isoleucine          2.4          4           1
 K lysine              2.4          4           1
 L leucine             7.1         12           2
 M methionine          2.4          4           1
 N asparagine          1.2          2           1
 P proline             6.5         11           2
 Q glutamine           2.4          4           2
 R arginine           14.9         25           2
 S serine              9.5         16           2
 T threonine           6.0         10           2
 V valine              3.0          5           1
 W tryptophan          3.6          6           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344814 
LOC100289241          1.000   PREDICTED: hypothetical protein 
LOC100289241          0.997   PREDICTED: hypothetical protein XP_002343345 
LOC100292370          0.047   PREDICTED: hypothetical protein 
LOC100288658          0.032   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.032   PREDICTED: hypothetical protein 
MLL4                  0.032   myeloid/lymphoid or mixed-lineage leukemia 4 
LOC100293776          0.025   PREDICTED: hypothetical protein 
RBM15B                0.025   RNA binding motif protein 15B 
LOC728503             0.025   PREDICTED: hypothetical protein 
LOC728503             0.025   PREDICTED: hypothetical protein 
LOC728503             0.025   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100287063          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
LOC100129463          0.022   PREDICTED: hypothetical protein 
ANKRD60               0.019   PREDICTED: ankyrin repeat domain 60 
OSBP                  0.019   oxysterol binding protein 
TTC19                 0.019   tetratricopeptide repeat domain 19 
LOC100293375          0.019   PREDICTED: hypothetical protein 
ASXL1                 0.019   additional sex combs like 1 
CDV3                  0.019   carnitine deficiency-associated gene expressed in v...
CDV3                  0.019   carnitine deficiency-associated gene expressed in ven...
LOC100292048          0.016   PREDICTED: hypothetical protein XP_002344877 
LOC100292374          0.016   PREDICTED: similar to transmembrane protein 125 [Ho...
LOC100290008          0.016   PREDICTED: hypothetical protein XP_002346440 
LOC100289126          0.016   PREDICTED: hypothetical protein XP_002343381 
LOC100288314          0.016   PREDICTED: hypothetical protein XP_002342147 
ZNRF2                 0.016   zinc finger/RING finger 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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