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Search of human proteins with 239756061
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756061 PREDICTED: hypothetical protein [Homo sapiens]
(332 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756061 PREDICTED: hypothetical protein [Homo sapiens] 671 0.0
gi|239750588 PREDICTED: hypothetical protein XP_002347440 [Homo ... 399 e-111
gi|239744885 PREDICTED: hypothetical protein XP_002344275 [Homo ... 399 e-111
gi|156416026 zinc finger protein 219 [Homo sapiens] 35 0.12
gi|156415998 zinc finger protein 219 [Homo sapiens] 35 0.12
gi|156415996 zinc finger protein 219 [Homo sapiens] 35 0.12
gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo... 34 0.16
gi|239752777 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239749872 PREDICTED: hypothetical protein [Homo sapiens] 30 3.0
gi|239747289 PREDICTED: hypothetical protein XP_002346412 [Homo ... 30 3.0
gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo ... 30 3.0
gi|239741113 PREDICTED: hypothetical protein XP_002342112 [Homo ... 30 3.0
gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo sap... 29 6.7
gi|33519458 myeloid cell leukemia sequence 1 isoform 2 [Homo sap... 29 6.7
gi|197927231 hypothetical protein LOC389152 [Homo sapiens] 29 6.7
gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2) int... 28 8.7
gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo s... 28 8.7
gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo s... 28 8.7
gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens] 28 8.7
gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens] 28 8.7
gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens] 28 8.7
gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens] 28 8.7
gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens] 28 8.7
gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo... 28 8.7
gi|22027554 voltage-dependent calcium channel gamma-6 subunit is... 28 8.7
gi|22027560 voltage-dependent calcium channel gamma-6 subunit is... 28 8.7
gi|22027557 voltage-dependent calcium channel gamma-6 subunit is... 28 8.7
>gi|239756061 PREDICTED: hypothetical protein [Homo sapiens]
Length = 332
Score = 671 bits (1730), Expect = 0.0
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV 60
MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV
Sbjct: 1 MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV 60
Query: 61 PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR 120
PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR
Sbjct: 61 PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR 120
Query: 121 LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA 180
LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA
Sbjct: 121 LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA 180
Query: 181 LLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEEGSVFRAGLLRLR 240
LLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEEGSVFRAGLLRLR
Sbjct: 181 LLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEEGSVFRAGLLRLR 240
Query: 241 NRGLVALLSSYCAGAMLGSSSGAVPGSRPGLSASASAVQAQYWVRGLAPPPWMDGAAGPA 300
NRGLVALLSSYCAGAMLGSSSGAVPGSRPGLSASASAVQAQYWVRGLAPPPWMDGAAGPA
Sbjct: 241 NRGLVALLSSYCAGAMLGSSSGAVPGSRPGLSASASAVQAQYWVRGLAPPPWMDGAAGPA 300
Query: 301 RALWPELLTNSQAIPSPYRLVAVLKDLAGLFV 332
RALWPELLTNSQAIPSPYRLVAVLKDLAGLFV
Sbjct: 301 RALWPELLTNSQAIPSPYRLVAVLKDLAGLFV 332
>gi|239750588 PREDICTED: hypothetical protein XP_002347440 [Homo
sapiens]
Length = 510
Score = 399 bits (1024), Expect = e-111
Identities = 202/225 (89%), Positives = 205/225 (91%), Gaps = 2/225 (0%)
Query: 1 MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV 60
MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV
Sbjct: 1 MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV 60
Query: 61 PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR 120
PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR
Sbjct: 61 PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR 120
Query: 121 LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA 180
LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA
Sbjct: 121 LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA 180
Query: 181 LLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFG 225
LLLLRVPVPWDRR+ F V SR GH + P+ FG
Sbjct: 181 LLLLRVPVPWDRRTAATPVSFGGCIVCASR--GHQRGVPGPKAFG 223
>gi|239744885 PREDICTED: hypothetical protein XP_002344275 [Homo
sapiens]
Length = 510
Score = 399 bits (1024), Expect = e-111
Identities = 202/225 (89%), Positives = 205/225 (91%), Gaps = 2/225 (0%)
Query: 1 MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV 60
MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV
Sbjct: 1 MALGLGQAPGFHGPVDPLEEGGDLGVDPVLPLTGTALSPADDACHEVGVLEAGDVRAPAV 60
Query: 61 PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR 120
PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR
Sbjct: 61 PLAGILLLGVVAGTEHVLGDDEAAGQLAAVAVHVGHLQHLEPGGLPALLVGAPEAAHNPR 120
Query: 121 LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA 180
LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA
Sbjct: 121 LLRHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHLHLVHRLTA 180
Query: 181 LLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFG 225
LLLLRVPVPWDRR+ F V SR GH + P+ FG
Sbjct: 181 LLLLRVPVPWDRRTAATPVSFGGCIVCASR--GHQRGVPGPKAFG 223
>gi|156416026 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 34.7 bits (78), Expect = 0.12
Identities = 37/113 (32%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 180 ALLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEE--GSVFRAGLL 237
ALLL P P +RR P +L + RP G R FGG S A
Sbjct: 360 ALLLAPAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARAR 419
Query: 238 RLR-------NRGLVALLSSYCAGAMLGS--SSGAVPGSRPGLSASASAVQAQ 281
R R + A ++ G LGS S PG PG SASA+ QA+
Sbjct: 420 RHRAEEPEEEEEVVEAEEETWARGRSLGSLASLHPRPGEGPGHSASAAGAQAR 472
>gi|156415998 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 34.7 bits (78), Expect = 0.12
Identities = 37/113 (32%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 180 ALLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEE--GSVFRAGLL 237
ALLL P P +RR P +L + RP G R FGG S A
Sbjct: 360 ALLLAPAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARAR 419
Query: 238 RLR-------NRGLVALLSSYCAGAMLGS--SSGAVPGSRPGLSASASAVQAQ 281
R R + A ++ G LGS S PG PG SASA+ QA+
Sbjct: 420 RHRAEEPEEEEEVVEAEEETWARGRSLGSLASLHPRPGEGPGHSASAAGAQAR 472
>gi|156415996 zinc finger protein 219 [Homo sapiens]
Length = 722
Score = 34.7 bits (78), Expect = 0.12
Identities = 37/113 (32%), Positives = 45/113 (39%), Gaps = 11/113 (9%)
Query: 180 ALLLLRVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEE--GSVFRAGLL 237
ALLL P P +RR P +L + RP G R FGG S A
Sbjct: 360 ALLLAPAPTPAERREPPSLLGYLSLRAGEGRPNGEGAEPGPGRSFGGFRPLSSALPARAR 419
Query: 238 RLR-------NRGLVALLSSYCAGAMLGS--SSGAVPGSRPGLSASASAVQAQ 281
R R + A ++ G LGS S PG PG SASA+ QA+
Sbjct: 420 RHRAEEPEEEEEVVEAEEETWARGRSLGSLASLHPRPGEGPGHSASAAGAQAR 472
>gi|171184400 ATP-binding cassette, sub-family B, member 10 [Homo
sapiens]
Length = 738
Score = 34.3 bits (77), Expect = 0.16
Identities = 30/83 (36%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
Query: 225 GGEEGSVFRAGLLRLRNRGLVALLSSYCAGAMLGSSSGAVPGSR-PGLSASASAVQAQYW 283
G G + A LL L RG S GA G + +P +R PG A+A+ + W
Sbjct: 78 GASRGVLGLARLLGLWARGP----GSCRCGAFAGPGAPRLPRARFPGGPAAAAWAGDEAW 133
Query: 284 VRGLAPPPWMDGAAGPARALWPE 306
RG A PP G PA A PE
Sbjct: 134 RRGPAAPPGDKGRLRPAAAGLPE 156
>gi|239752777 PREDICTED: hypothetical protein [Homo sapiens]
Length = 108
Score = 30.0 bits (66), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 127 GLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIG 160
GL P L + R H+ G G P HG+V+V G
Sbjct: 20 GLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDG 53
>gi|239749872 PREDICTED: hypothetical protein [Homo sapiens]
Length = 125
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 112 APEAAHNPRLL--RHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHG 154
A + A +PR L + +RG GP +LG AG G G L P G
Sbjct: 47 AEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRG 91
>gi|239747289 PREDICTED: hypothetical protein XP_002346412 [Homo
sapiens]
Length = 108
Score = 30.0 bits (66), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 127 GLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIG 160
GL P L + R H+ G G P HG+V+V G
Sbjct: 20 GLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDG 53
>gi|239744174 PREDICTED: hypothetical protein XP_002343068 [Homo
sapiens]
Length = 125
Score = 30.0 bits (66), Expect = 3.0
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 112 APEAAHNPRLL--RHQRGLGPVTLGEAGRRHVHAEGDGGLEPEHG 154
A + A +PR L + +RG GP +LG AG G G L P G
Sbjct: 47 AEQLAGHPRRLSEKERRGAGPGSLGLAGAGQPRGPGRGRLRPGRG 91
>gi|239741113 PREDICTED: hypothetical protein XP_002342112 [Homo
sapiens]
Length = 108
Score = 30.0 bits (66), Expect = 3.0
Identities = 14/34 (41%), Positives = 18/34 (52%)
Query: 127 GLGPVTLGEAGRRHVHAEGDGGLEPEHGDVEVIG 160
GL P L + R H+ G G P HG+V+V G
Sbjct: 20 GLVPAQLPRSRREQAHSRGAGPGAPAHGEVDVDG 53
>gi|11386165 myeloid cell leukemia sequence 1 isoform 1 [Homo
sapiens]
Length = 350
Score = 28.9 bits (63), Expect = 6.7
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 242 RGLVALLSSYCAGAMLGSSSGAVPGSRPG--LSASASAVQAQYWVRGLAPPPWMDGAAG- 298
R V L+ YC GA LG+ SG +RPG L A+ A+ + G + G+AG
Sbjct: 6 RNAVIGLNLYCGGAGLGAGSGG--ATRPGGRLLATEKEASARREIGGGEAGAVIGGSAGA 63
Query: 299 -PARALWPE 306
P L P+
Sbjct: 64 SPPSTLTPD 72
>gi|33519458 myeloid cell leukemia sequence 1 isoform 2 [Homo
sapiens]
Length = 271
Score = 28.9 bits (63), Expect = 6.7
Identities = 24/69 (34%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 242 RGLVALLSSYCAGAMLGSSSGAVPGSRPG--LSASASAVQAQYWVRGLAPPPWMDGAAG- 298
R V L+ YC GA LG+ SG +RPG L A+ A+ + G + G+AG
Sbjct: 6 RNAVIGLNLYCGGAGLGAGSGG--ATRPGGRLLATEKEASARREIGGGEAGAVIGGSAGA 63
Query: 299 -PARALWPE 306
P L P+
Sbjct: 64 SPPSTLTPD 72
>gi|197927231 hypothetical protein LOC389152 [Homo sapiens]
Length = 262
Score = 28.9 bits (63), Expect = 6.7
Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 4/31 (12%)
Query: 289 PPPWMDGAAGPARALWPELLTNSQAIPSPYR 319
P WMD AAG A L+P +++++ SPYR
Sbjct: 164 PELWMDSAAGSAAGLYP----SARSMFSPYR 190
>gi|223278403 glutamate receptor, ionotropic, delta 2 (Grid2)
interacting protein [Homo sapiens]
Length = 1211
Score = 28.5 bits (62), Expect = 8.7
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 259 SSSGAVPGSRPGLSASASAVQAQYWVRGLAPPP--------------WMDGAAGPARALW 304
S+S + S G S + S++ L+PPP DG+ GPA+AL
Sbjct: 726 SASDCISSSEEGSSLTYSSISDHIPPPPLSPPPPPPLPFHDAKPSSRSSDGSRGPAQALA 785
Query: 305 PELLTNSQAIPSP 317
L S +P P
Sbjct: 786 KPLTQLSHPVPPP 798
>gi|253970502 Ewing sarcoma breakpoint region 1 isoform 3 [Homo
sapiens]
Length = 655
Score = 28.5 bits (62), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 LGLGQAPGFHGPVDPLEEGGDLGVDP 28
+G G+ GF+ P P++EG DL + P
Sbjct: 324 MGAGERGGFNKPGGPMDEGPDLDLGP 349
>gi|253970500 Ewing sarcoma breakpoint region 1 isoform 1 [Homo
sapiens]
Length = 661
Score = 28.5 bits (62), Expect = 8.7
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 3 LGLGQAPGFHGPVDPLEEGGDLGVDP 28
+G G+ GF+ P P++EG DL + P
Sbjct: 330 MGAGERGGFNKPGGPMDEGPDLDLGP 355
>gi|169216381 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 257
Score = 28.5 bits (62), Expect = 8.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 271 LSASASAVQAQYWVRGLAP-PPWMDGAAGPARALWPELLTNSQAIPSPYRLVAVLKDL 327
LSA+ A++ W R +A P G GP R LWP S P + +A L D+
Sbjct: 8 LSANLPALKVTGWSRCVASRQPITVGVCGPKRPLWP-----SSEKPFNFHTLAKLHDI 60
>gi|169216635 PREDICTED: H2B histone family, member M [Homo sapiens]
Length = 257
Score = 28.5 bits (62), Expect = 8.7
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 271 LSASASAVQAQYWVRGLAP-PPWMDGAAGPARALWPELLTNSQAIPSPYRLVAVLKDL 327
LSA+ A++ W R +A P G GP R LWP S P + +A L D+
Sbjct: 8 LSANLPALKVTGWSRCVASRQPITVGVCGPKRPLWP-----SSEKPFNFHTLAKLHDI 60
>gi|19913385 G6B protein isoform G6b-G precursor [Homo sapiens]
Length = 222
Score = 28.5 bits (62), Expect = 8.7
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 185 RVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEEGSVFRAGLLRLRNRGL 244
R P+ W S P L P V + R L R + L G+ G+ F G +R +
Sbjct: 60 RRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTV 119
Query: 245 VALLS--SYCAGAMLGSSSGAV------PGSRPGLSASASAVQAQYWVRGLAPP 290
+ +L +YC G + G+V P GL A+ +W+ PP
Sbjct: 120 LHVLGDRTYCKAP--GPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPP 171
>gi|19913375 G6B protein isoform G6b-B precursor [Homo sapiens]
Length = 241
Score = 28.5 bits (62), Expect = 8.7
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 185 RVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEEGSVFRAGLLRLRNRGL 244
R P+ W S P L P V + R L R + L G+ G+ F G +R +
Sbjct: 60 RRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTV 119
Query: 245 VALLS--SYCAGAMLGSSSGAV------PGSRPGLSASASAVQAQYWVRGLAPP 290
+ +L +YC G + G+V P GL A+ +W+ PP
Sbjct: 120 LHVLGDRTYCKAP--GPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPP 171
>gi|19913373 G6B protein isoform G6b-A precursor [Homo sapiens]
Length = 237
Score = 28.5 bits (62), Expect = 8.7
Identities = 30/114 (26%), Positives = 45/114 (39%), Gaps = 10/114 (8%)
Query: 185 RVPVPWDRRSPVLQAPFLMPGVRKSRPLGHFQVRSKPRLFGGEEGSVFRAGLLRLRNRGL 244
R P+ W S P L P V + R L R + L G+ G+ F G +R +
Sbjct: 60 RRPILWASSSGTPTVPPLQPFVGRLRSLDSGIRRLELLLSAGDSGTFFCKGRHEDESRTV 119
Query: 245 VALLS--SYCAGAMLGSSSGAV------PGSRPGLSASASAVQAQYWVRGLAPP 290
+ +L +YC G + G+V P GL A+ +W+ PP
Sbjct: 120 LHVLGDRTYCKAP--GPTHGSVYPQLLIPLLGAGLVLGLGALGLVWWLHRRLPP 171
>gi|163965434 dapper, antagonist of beta-catenin, homolog 2 [Homo
sapiens]
Length = 774
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 130 PVTLGEAGRRHVHAEGDGGLEPEHGDVEVIGLLCEPVVLDDHL 172
PV+ G+ R D GL+ D E++GLLC+ V + H+
Sbjct: 216 PVSTGDLDRA---LPADTGLQKASADAELLGLLCQGVDIPLHV 255
>gi|22027554 voltage-dependent calcium channel gamma-6 subunit
isoform a [Homo sapiens]
Length = 260
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
G AGRR H +G GL PE G V++ LL
Sbjct: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
>gi|22027560 voltage-dependent calcium channel gamma-6 subunit
isoform c [Homo sapiens]
Length = 189
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
G AGRR H +G GL PE G V++ LL
Sbjct: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
>gi|22027557 voltage-dependent calcium channel gamma-6 subunit
isoform b [Homo sapiens]
Length = 214
Score = 28.5 bits (62), Expect = 8.7
Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 134 GEAGRRHVHAEGDGGLEPE-HGDVEVIGLL 162
G AGRR H +G GL PE G V++ LL
Sbjct: 16 GAAGRRRAHGQGRSGLTPEREGKVKLALLL 45
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.141 0.435
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,176,080
Number of Sequences: 37866
Number of extensions: 807574
Number of successful extensions: 2212
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2188
Number of HSP's gapped (non-prelim): 32
length of query: 332
length of database: 18,247,518
effective HSP length: 103
effective length of query: 229
effective length of database: 14,347,320
effective search space: 3285536280
effective search space used: 3285536280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.