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Search of human proteins with 239756045
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239756045 PREDICTED: hypothetical protein [Homo sapiens]
(155 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239756045 PREDICTED: hypothetical protein [Homo sapiens] 336 5e-93
gi|112420992 crumbs homolog 2 [Homo sapiens] 32 0.29
gi|49169841 hypothetical protein LOC414919 [Homo sapiens] 30 0.83
gi|13376335 hypothetical protein LOC79946 [Homo sapiens] 28 3.2
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 28 4.1
gi|120587019 zinc finger protein 318 [Homo sapiens] 27 5.4
gi|223972704 hypothetical protein LOC284418 [Homo sapiens] 27 7.0
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 27 7.0
gi|239756053 PREDICTED: hypothetical protein XP_002344786 [Homo ... 27 7.0
gi|239750556 PREDICTED: hypothetical protein [Homo sapiens] 27 7.0
gi|239744853 PREDICTED: hypothetical protein XP_002344121 [Homo ... 27 7.0
gi|110832843 TBP-associated factor 4 [Homo sapiens] 27 7.0
gi|30425428 deltex homolog 3 [Homo sapiens] 27 7.0
gi|134142824 forkhead box D2 [Homo sapiens] 27 7.0
gi|164565408 common-site lymphoma/leukemia guanine nucleotide ex... 27 7.0
gi|110431364 GLIS family zinc finger 2 [Homo sapiens] 27 7.0
gi|189217853 matrix metalloproteinase 2 isoform b [Homo sapiens] 27 9.2
gi|11342666 matrix metalloproteinase 2 isoform a preproprotein [... 27 9.2
gi|239754418 PREDICTED: hypothetical protein [Homo sapiens] 27 9.2
gi|239748946 PREDICTED: hypothetical protein XP_002346864 [Homo ... 27 9.2
gi|239743670 PREDICTED: hypothetical protein XP_002342942 [Homo ... 27 9.2
gi|239742968 PREDICTED: hypothetical protein XP_002342707 [Homo ... 27 9.2
gi|155030232 proline, glutamic acid and leucine rich protein 1 [... 27 9.2
gi|210031154 zinc finger protein 541 [Homo sapiens] 27 9.2
>gi|239756045 PREDICTED: hypothetical protein [Homo sapiens]
Length = 155
Score = 336 bits (861), Expect = 5e-93
Identities = 155/155 (100%), Positives = 155/155 (100%)
Query: 1 MLRLLFLGYWASAAVLSLPSLPVSVQHHPRIGRDVFFEFWVMLRTELEKGQRRPLGCLES 60
MLRLLFLGYWASAAVLSLPSLPVSVQHHPRIGRDVFFEFWVMLRTELEKGQRRPLGCLES
Sbjct: 1 MLRLLFLGYWASAAVLSLPSLPVSVQHHPRIGRDVFFEFWVMLRTELEKGQRRPLGCLES 60
Query: 61 LSYFFVPWWRDVGFISLPDRPGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASGHCC 120
LSYFFVPWWRDVGFISLPDRPGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASGHCC
Sbjct: 61 LSYFFVPWWRDVGFISLPDRPGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASGHCC 120
Query: 121 LCSPPAGLHTNACDDIGPSASGDLLHPFLSKAQSC 155
LCSPPAGLHTNACDDIGPSASGDLLHPFLSKAQSC
Sbjct: 121 LCSPPAGLHTNACDDIGPSASGDLLHPFLSKAQSC 155
>gi|112420992 crumbs homolog 2 [Homo sapiens]
Length = 1285
Score = 31.6 bits (70), Expect = 0.29
Identities = 26/88 (29%), Positives = 35/88 (39%), Gaps = 27/88 (30%)
Query: 71 DVGFISLPDRPGPPCLRLHLSFLFGGC------GLPPLPAPLRKLGGAPEASGHCC---- 120
D+GF+ GP +R+ L+ F GC G PLP + G AP A H
Sbjct: 992 DLGFLQ-----GPGAVRILLAENFTGCLGRVALGGLPLPLARPRPGAAPGAREHFASWPG 1046
Query: 121 ------------LCSPPAGLHTNACDDI 136
+C+P LH AC D+
Sbjct: 1047 TPAPILGCRGAPVCAPSPCLHDGACRDL 1074
>gi|49169841 hypothetical protein LOC414919 [Homo sapiens]
Length = 216
Score = 30.0 bits (66), Expect = 0.83
Identities = 30/101 (29%), Positives = 37/101 (36%), Gaps = 16/101 (15%)
Query: 56 GCLESLSYFFVPWWRDVGFISLPDRP-----------GPPCLRL-----HLSFLFGGCGL 99
G E+ F P R+ F+ DRP GPP L L+ F L
Sbjct: 86 GRYEAAFPFLSPCGRERNFLRCEDRPVVFTHLLTADHGPPRLSYCGGGEALAVPFEPARL 145
Query: 100 PPLPAPLRKLGGAPEASGHCCLCSPPAGLHTNACDDIGPSA 140
PL A R APE +G L +AC + GP A
Sbjct: 146 LPLAANGRLYHPAPERAGGVGLVRSALAFELSACFEYGPGA 186
>gi|13376335 hypothetical protein LOC79946 [Homo sapiens]
Length = 257
Score = 28.1 bits (61), Expect = 3.2
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 95 GGCGLPPLPAPLRKLGGAPEASGHCC----LCSPPAGLHTNACDDIGPSAS 141
G CG P P A+ CC CS P + AC GP+A+
Sbjct: 189 GSCGARTAPTPAPTCASPSAAASSCCRRRRACSSPTTAWSGAC-GAGPTAA 238
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 27.7 bits (60), Expect = 4.1
Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 78 PDRPGPPCLRLHLSFLFGGCGLPP-LPAP 105
P P PP + L F GG G+PP LP P
Sbjct: 867 PAVPTPPSMSAALPFPAGGLGMPPSLPPP 895
>gi|120587019 zinc finger protein 318 [Homo sapiens]
Length = 2279
Score = 27.3 bits (59), Expect = 5.4
Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 95 GGCGLPPLP-APLRKLGGAPEASGHCCLCSPPAGLHTNACDDIGPSASGDLLH 146
GG G P AP KL G P A+G S T++ + SAS + LH
Sbjct: 1576 GGKGAPETKGAPETKLSGGPLANGENSNLSRTKSSDTSSTSPLNSSASQEELH 1628
>gi|223972704 hypothetical protein LOC284418 [Homo sapiens]
Length = 922
Score = 26.9 bits (58), Expect = 7.0
Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 7/76 (9%)
Query: 54 PLGCLESLSYFFVPWWRD-VGFISLPDRPGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGA 112
P CL S Y +P R+ G + PGPP + S L C P L +KL
Sbjct: 367 PAACL-STPYSSIPRGREKAGPMGSHQGPGPPPCQKAPSGLVTSCKAPFLVDQSQKLPAV 425
Query: 113 PEASGHCCLCSPPAGL 128
P +S PP GL
Sbjct: 426 PASS-----WKPPPGL 436
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 26.9 bits (58), Expect = 7.0
Identities = 25/85 (29%), Positives = 30/85 (35%), Gaps = 19/85 (22%)
Query: 73 GFISLPDRPGPPCLRLHLSFLFGGCGLPPLPAPLRKLG-------GAPEASGHCCLCSPP 125
GF LP +PGPP L + G G P P + G P SG L PP
Sbjct: 362 GFPGLPGQPGPPGLPVP-----GQAGAPGFPGERGEKGDRGFPGTSLPGPSGRDGLPGPP 416
Query: 126 AGL-------HTNACDDIGPSASGD 143
+TN + P GD
Sbjct: 417 GSPGPPGQPGYTNGIVECQPGPPGD 441
>gi|239756053 PREDICTED: hypothetical protein XP_002344786 [Homo
sapiens]
Length = 86
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 80 RPGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASGHCC 120
+P PP RL + LPAP R+LG A A CC
Sbjct: 43 QPQPPHARLQVCTDASAPSRRRLPAPRRQLGEAGWAPETCC 83
>gi|239750556 PREDICTED: hypothetical protein [Homo sapiens]
Length = 86
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 80 RPGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASGHCC 120
+P PP RL + LPAP R+LG A A CC
Sbjct: 43 QPQPPHARLQVCTDASAPSRRRLPAPRRQLGEAGWAPETCC 83
>gi|239744853 PREDICTED: hypothetical protein XP_002344121 [Homo
sapiens]
Length = 86
Score = 26.9 bits (58), Expect = 7.0
Identities = 16/41 (39%), Positives = 19/41 (46%)
Query: 80 RPGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASGHCC 120
+P PP RL + LPAP R+LG A A CC
Sbjct: 43 QPQPPHARLQVCTDASAPSRRRLPAPRRQLGEAGWAPETCC 83
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 26.9 bits (58), Expect = 7.0
Identities = 20/50 (40%), Positives = 21/50 (42%), Gaps = 9/50 (18%)
Query: 78 PDRPGPPCLRLHLSFLFGGCGLPPLPA-PLRKLGGAPEASGHCCLCSPPA 126
P RPGPP R L +P PA P KL PE S C P A
Sbjct: 102 PQRPGPPSPRRPL--------VPAGPAPPAAKLRPPPEGSAGSCAPVPAA 143
>gi|30425428 deltex homolog 3 [Homo sapiens]
Length = 347
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/49 (38%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Query: 80 RPGPPCLRLHLSFLFGGCGLPPLPAPL------RKLGGAPEASGHCCLC 122
R GPP LR G GLPP P PL R A E C +C
Sbjct: 119 RAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPIC 167
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 26.9 bits (58), Expect = 7.0
Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 5/37 (13%)
Query: 81 PGPPCLRLHLSFLFGGCGLPPLPAPLRKLGGAPEASG 117
PGPP + +F G G P PAP G P +G
Sbjct: 320 PGPPT-----ASVFAGAGSAPAPAPASGSGPGPGPAG 351
>gi|164565408 common-site lymphoma/leukemia guanine nucleotide
exchange factor [Homo sapiens]
Length = 1386
Score = 26.9 bits (58), Expect = 7.0
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Query: 101 PLPAPLRKLGGAPEASGHCCLCS---PPAGLHTNACDDIGPSASGDLLHP 147
P PL K GG+ + G +CS P H ++ D GP GD L P
Sbjct: 1050 PTNIPLTKQGGSRDVQGPDPVCSQPIQPLSWHGSSLDPQGP---GDTLPP 1096
>gi|110431364 GLIS family zinc finger 2 [Homo sapiens]
Length = 524
Score = 26.9 bits (58), Expect = 7.0
Identities = 22/57 (38%), Positives = 24/57 (42%), Gaps = 15/57 (26%)
Query: 93 LFGGCGLPPLPAPLRKLGGAPEASGHCCLCSPPAGLHTNACDDIGPSASGDLLHPFL 149
LFGG GLP LP PL AP P L AC + G S G + P L
Sbjct: 361 LFGGPGLPGLPLPL-----AP----------GPLDLSALACGNGGGSGGGGGMGPGL 402
>gi|189217853 matrix metalloproteinase 2 isoform b [Homo sapiens]
Length = 610
Score = 26.6 bits (57), Expect = 9.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 4 LLFLGYWASAAVLSLPSLPVSVQHHPRIGRDVFF---EFWVMLRTELEKGQRRPLGCL 58
LL +W LP +V P+ + VFF E+W+ + LE+G +PL L
Sbjct: 457 LLVATFWPE-----LPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSL 509
>gi|11342666 matrix metalloproteinase 2 isoform a preproprotein
[Homo sapiens]
Length = 660
Score = 26.6 bits (57), Expect = 9.2
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 4 LLFLGYWASAAVLSLPSLPVSVQHHPRIGRDVFF---EFWVMLRTELEKGQRRPLGCL 58
LL +W LP +V P+ + VFF E+W+ + LE+G +PL L
Sbjct: 507 LLVATFWPE-----LPEKIDAVYEAPQEEKAVFFAGNEYWIYSASTLERGYPKPLTSL 559
>gi|239754418 PREDICTED: hypothetical protein [Homo sapiens]
Length = 106
Score = 26.6 bits (57), Expect = 9.2
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 22/56 (39%)
Query: 95 GGCGLPPLPA-------------------PLRKLGG--APEASGHCCLCSP-PAGL 128
GGC LPPL A PL K GG +P G C C+P PA L
Sbjct: 16 GGCTLPPLLAAGGRALRQDSAAAGPGQRPPLPKPGGNSSPSRHGGCAQCAPEPAPL 71
>gi|239748946 PREDICTED: hypothetical protein XP_002346864 [Homo
sapiens]
Length = 106
Score = 26.6 bits (57), Expect = 9.2
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 22/56 (39%)
Query: 95 GGCGLPPLPA-------------------PLRKLGG--APEASGHCCLCSP-PAGL 128
GGC LPPL A PL K GG +P G C C+P PA L
Sbjct: 16 GGCTLPPLLAAGGRALRQDSAAAGPGQRPPLPKPGGNSSPSRHGGCAQCAPEPAPL 71
>gi|239743670 PREDICTED: hypothetical protein XP_002342942 [Homo
sapiens]
Length = 386
Score = 26.6 bits (57), Expect = 9.2
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 96 GCGLPPLPAPLR-KLGGAPEAS 116
GCG PP P P + + GGA E S
Sbjct: 191 GCGFPPAPEPQQDRPGGAAEGS 212
>gi|239742968 PREDICTED: hypothetical protein XP_002342707 [Homo
sapiens]
Length = 106
Score = 26.6 bits (57), Expect = 9.2
Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 22/56 (39%)
Query: 95 GGCGLPPLPA-------------------PLRKLGG--APEASGHCCLCSP-PAGL 128
GGC LPPL A PL K GG +P G C C+P PA L
Sbjct: 16 GGCTLPPLLAAGGRALRQDSAAAGPGQRPPLPKPGGNSSPSRHGGCAQCAPEPAPL 71
>gi|155030232 proline, glutamic acid and leucine rich protein 1
[Homo sapiens]
Length = 1130
Score = 26.6 bits (57), Expect = 9.2
Identities = 24/99 (24%), Positives = 34/99 (34%)
Query: 40 WVMLRTELEKGQRRPLGCLESLSYFFVPWWRDVGFISLPDRPGPPCLRLHLSFLFGGCGL 99
W + R L GQ RP + + Y + W V S G L+ L
Sbjct: 409 WSIGRDSLSPGQERPYSTVRTKVYAILELWVQVCGASAGMLQGGASGEALLTHLLSDISP 468
Query: 100 PPLPAPLRKLGGAPEASGHCCLCSPPAGLHTNACDDIGP 138
P LR G+P+ S S P L + + + P
Sbjct: 469 PADALKLRSPRGSPDGSLQTGKPSAPKKLKLDVGEAMAP 507
>gi|210031154 zinc finger protein 541 [Homo sapiens]
Length = 1365
Score = 26.6 bits (57), Expect = 9.2
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 101 PLPAPLRKLGGAPEASGHCCLCSPPAGLHTNACDDIGPSAS 141
P PAP GA ++ G C PA +++C GP A+
Sbjct: 290 PGPAP----AGASDSEGRNTACPCPASSGSSSCTPAGPHAA 326
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.327 0.145 0.507
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,899,500
Number of Sequences: 37866
Number of extensions: 446997
Number of successful extensions: 1305
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1297
Number of HSP's gapped (non-prelim): 29
length of query: 155
length of database: 18,247,518
effective HSP length: 93
effective length of query: 62
effective length of database: 14,725,980
effective search space: 913010760
effective search space used: 913010760
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.