Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239755952
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755952 PREDICTED: hypothetical protein [Homo sapiens]
(233 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755952 PREDICTED: hypothetical protein [Homo sapiens] 489 e-138
gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo sap... 38 0.008
gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens] 38 0.008
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 37 0.019
gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens] 36 0.025
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 35 0.055
gi|14993776 skeletal myosin light chain kinase [Homo sapiens] 35 0.055
gi|87196343 PDZ domain containing 2 [Homo sapiens] 35 0.055
gi|57222570 codanin 1 [Homo sapiens] 35 0.072
gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens] 35 0.072
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 34 0.094
gi|169212869 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|113427839 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|113427667 PREDICTED: hypothetical protein [Homo sapiens] 33 0.16
gi|215820635 protein phosphatase 1, regulatory subunit 13 like [... 33 0.21
gi|63003907 protein phosphatase 1, regulatory subunit 13 like [H... 33 0.21
gi|18079216 CASK interacting protein 1 [Homo sapiens] 33 0.21
gi|239756354 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo ... 33 0.21
gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo ... 33 0.21
gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo ... 33 0.21
gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo ... 33 0.21
gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo ... 33 0.21
gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo ... 33 0.21
gi|239740786 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|239740731 PREDICTED: hypothetical protein [Homo sapiens] 33 0.21
gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 33 0.21
gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Hom... 33 0.21
gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens] 33 0.27
>gi|239755952 PREDICTED: hypothetical protein [Homo sapiens]
Length = 233
Score = 489 bits (1258), Expect = e-138
Identities = 233/233 (100%), Positives = 233/233 (100%)
Query: 1 MHGPYRGFCRETCDHKEEGNSTPAGLRAEDLQTSRPIGDQRPWLGIQMVVVGGLKISQSP 60
MHGPYRGFCRETCDHKEEGNSTPAGLRAEDLQTSRPIGDQRPWLGIQMVVVGGLKISQSP
Sbjct: 1 MHGPYRGFCRETCDHKEEGNSTPAGLRAEDLQTSRPIGDQRPWLGIQMVVVGGLKISQSP 60
Query: 61 GAVWDREPASVPLQTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDR 120
GAVWDREPASVPLQTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDR
Sbjct: 61 GAVWDREPASVPLQTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDR 120
Query: 121 GIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFASRYPLRRRPLSR 180
GIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFASRYPLRRRPLSR
Sbjct: 121 GIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFASRYPLRRRPLSR 180
Query: 181 RSPGWSPAPRGRRGYGKFGDWREKGFGGGPRRGARGASSLPFMGCHTCVSLLP 233
RSPGWSPAPRGRRGYGKFGDWREKGFGGGPRRGARGASSLPFMGCHTCVSLLP
Sbjct: 181 RSPGWSPAPRGRRGYGKFGDWREKGFGGGPRRGARGASSLPFMGCHTCVSLLP 233
>gi|239740948 PREDICTED: hypothetical protein LOC644246 [Homo
sapiens]
Length = 328
Score = 37.7 bits (86), Expect = 0.008
Identities = 48/159 (30%), Positives = 62/159 (38%), Gaps = 11/159 (6%)
Query: 68 PASVPL--QTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVL 125
P S P + W P G + AE RT+ L P P+ P P Q
Sbjct: 127 PCSAPTGPEHGWRPQPGREGGRAGAESETAPPPRTNKHRRLQPEPA-PRPPPPAASFQPG 185
Query: 126 SALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFASRYPLRRRPLSRRSPGW 185
SAL+ P R +LR + LP PAR + + L S + L L RR G
Sbjct: 186 SALQPPPAP-PRRDDSASLRCSVLP--PAR-RAVAAALGKWRPSSFSLPPFNLKRRENGA 241
Query: 186 SPAPRGRRGYGKFGDWREKGF----GGGPRRGARGASSL 220
S RRG G+ G R + GP GA A+S+
Sbjct: 242 SERAGERRGQGEEGQQRLRRLRLRRPRGPPGGAAAAASV 280
>gi|32455273 WNK lysine deficient protein kinase 2 [Homo sapiens]
Length = 2217
Score = 37.7 bits (86), Expect = 0.008
Identities = 36/108 (33%), Positives = 52/108 (48%), Gaps = 12/108 (11%)
Query: 19 GNSTPAGLRAEDLQTSRPIGDQRPW-LGIQMVVVGGLKISQSPGAVWDREPASVPLQTTW 77
G TP GL +E L+TS+P+ + L +Q +VVG + +P A R+ AS P +
Sbjct: 1419 GPGTPQGLTSE-LETSQPLAETHEAPLAVQPLVVGLAPCTPAPEAASTRD-ASAPREPLP 1476
Query: 78 DPY---SLETGAKENAEDGPP------VDARTSSSSVLPPPPSTPTTP 116
P S +G + A P V A + ++S LP PP PT P
Sbjct: 1477 PPAPEPSPHSGTPQPALGQPAPLLPAAVGAVSLATSQLPSPPLGPTVP 1524
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 36.6 bits (83), Expect = 0.019
Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 81 SLETGAKENAE--DGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTAR 138
S +GA+ +E PV R +S S P P ++ P R +L K+ PG
Sbjct: 21 SRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWP---KRLPGRPG 77
Query: 139 LARGALRAATLP-GSPARLSSPSLCLASNFASRYPLRRRPLS------RRSPGWSPAPRG 191
A G RAA P G+ + + + L ++ LRRRP+S R SP S A
Sbjct: 78 RAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASA 137
Query: 192 RRGYGKFGDWREKGFGGGPRRGA 214
R G GD GP GA
Sbjct: 138 RTSRGDSGD-------PGPEAGA 153
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 36.6 bits (83), Expect = 0.019
Identities = 44/143 (30%), Positives = 59/143 (41%), Gaps = 19/143 (13%)
Query: 81 SLETGAKENAE--DGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTAR 138
S +GA+ +E PV R +S S P P ++ P R +L K+ PG
Sbjct: 21 SRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPSHLLWP---KRLPGRPG 77
Query: 139 LARGALRAATLP-GSPARLSSPSLCLASNFASRYPLRRRPLS------RRSPGWSPAPRG 191
A G RAA P G+ + + + L ++ LRRRP+S R SP S A
Sbjct: 78 RAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASA 137
Query: 192 RRGYGKFGDWREKGFGGGPRRGA 214
R G GD GP GA
Sbjct: 138 RTSRGDSGD-------PGPEAGA 153
>gi|148612809 WNK lysine deficient protein kinase 1 [Homo sapiens]
Length = 2382
Score = 36.2 bits (82), Expect = 0.025
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 68 PASVPLQTTWDPYSLET---GAKENAEDGPPVDARTSSSSVLPPPPST-PTTPNMDRGIQ 123
PA+VP +P+ ET A PP A +V P PST P++ + DR +
Sbjct: 108 PAAVPQSAPPEPHREETVTATATSQVAQQPPAAAAPGEQAVAGPAPSTVPSSTSKDRPVS 167
Query: 124 VLSALKKKKNPGTARLARG 142
S + K+ P AR G
Sbjct: 168 QPSLVGSKEEPPPARSGSG 186
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 35.0 bits (79), Expect = 0.055
Identities = 43/143 (30%), Positives = 58/143 (40%), Gaps = 19/143 (13%)
Query: 81 SLETGAKENAE--DGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTAR 138
S +GA+ +E P R +S S P P ++ P R +L K+ PG
Sbjct: 21 SRPSGAESYSELLSSRPASPRGASFSAEPRPRASLPPPRPARPSHLLWP---KRLPGRPG 77
Query: 139 LARGALRAATLP-GSPARLSSPSLCLASNFASRYPLRRRPLS------RRSPGWSPAPRG 191
A G RAA P G+ + + + L ++ LRRRP+S R SP S A
Sbjct: 78 RAPGDRRAALPPPGTRSPFARAAAELGPSYQQIAGLRRRPVSHSPAHERPSPASSAAASA 137
Query: 192 RRGYGKFGDWREKGFGGGPRRGA 214
R G GD GP GA
Sbjct: 138 RTSRGDSGD-------PGPEAGA 153
>gi|14993776 skeletal myosin light chain kinase [Homo sapiens]
Length = 596
Score = 35.0 bits (79), Expect = 0.055
Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 14/115 (12%)
Query: 75 TTWDPYSLETGAK-ENAEDGPPVDARTSSSSVLPPPPSTPTT----PNMDRGIQVLSALK 129
T P + G K E G P + + LP +TP T P ++G
Sbjct: 65 TLAQPSTSSQGPKGEGDRGGGPAEGSAGPPAALPQQTATPETSVKKPKAEQGAS------ 118
Query: 130 KKKNPGTARLARGAL--RAATLPGSPARLSSPSLCLASNFASRYPLRRRPLSRRS 182
++PG R+ + A +AA GSPA L SPS C A +S L ++P S S
Sbjct: 119 GSQDPGKPRVGKKAAEGQAAARRGSPAFLHSPS-CPAIISSSEKLLAKKPPSEAS 172
>gi|87196343 PDZ domain containing 2 [Homo sapiens]
Length = 2839
Score = 35.0 bits (79), Expect = 0.055
Identities = 29/85 (34%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 91 EDGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRAATLP 150
ED P TS LPP ST P R L L + G R A+LP
Sbjct: 888 EDHPGSGCSTSEEGSLPPSTSTHKEPGKPRA-NSLVTLGSHRASGLFHKQVTVARQASLP 946
Query: 151 GSPARLSSPSL------CLASNFAS 169
GSP L +P L C +N AS
Sbjct: 947 GSPQALRNPLLRQRKVGCYDANDAS 971
>gi|57222570 codanin 1 [Homo sapiens]
Length = 1227
Score = 34.7 bits (78), Expect = 0.072
Identities = 51/174 (29%), Positives = 67/174 (38%), Gaps = 39/174 (22%)
Query: 66 REPASVPLQTTWDPYSLETGAKENAEDGPPVDA----------------RTSSSSVLPPP 109
RE SV W S + G+++NA + + + R SS VLP
Sbjct: 10 REEVSVAAVVRWIARSTQ-GSEDNAGEAAALSSLRALRKEFVPFLLNFLREQSSRVLPQG 68
Query: 110 PSTPT-TPNMDRGIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFA 168
P TP TP SA + G R +RGA R+ P + A+ + A
Sbjct: 69 PPTPAKTPG-------ASAALPGRPGGPPRGSRGA-RSQLFPPTEAQ----------STA 110
Query: 169 SRYPLRRRPLSRRSPGWSPA-PRGRRGYGKFGDWREKGFGGGPRRGARGASSLP 221
+ PL RR RR PG PA RG RG + GG R G+ S P
Sbjct: 111 AEAPLARRGGRRRGPG--PARERGGRGLEEGVSGESLPGAGGRRLRGSGSPSRP 162
>gi|72256200 B-cell CLL/lymphoma 9 [Homo sapiens]
Length = 1426
Score = 34.7 bits (78), Expect = 0.072
Identities = 35/123 (28%), Positives = 52/123 (42%), Gaps = 7/123 (5%)
Query: 71 VPLQTTWDPYSLETGAKENAEDG-PPVDARTSSSSVLPPPPSTPTTPNMDRGIQVL--SA 127
+PL + +P SL T G P+D + S V P + +P M + + S
Sbjct: 820 LPLNPSSNPTSLNTAPPVQRGLGRKPLDISVAGSQVHSPGINPLKSPTMHQVQSPMLGSP 879
Query: 128 LKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFASRYPLRRRPLSRRSPGWSP 187
K+P T G L P + A + SP + L S AS L+ L SPGW+
Sbjct: 880 SGNLKSPQTPSQLAGMLAG---PAAAASIKSPPV-LGSAAASPVHLKSPSLPAPSPGWTS 935
Query: 188 APR 190
+P+
Sbjct: 936 SPK 938
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 34.3 bits (77), Expect = 0.094
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 1/124 (0%)
Query: 89 NAEDGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRAAT 148
++E PP T S P +P + +S+ KN R R + T
Sbjct: 417 SSESSPPSPQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHT 476
Query: 149 LPGSPARLSSPSLCLASNFASRYPLRRRPLSRRSPGWSPAPRGRRGYGKFGDWREKGFGG 208
R SP+ SR P +R RSP W + R + +G+ + +G
Sbjct: 477 PSRRMGRSRSPATAKRGRSRSRTPTKRGHSRSRSPQWRRS-RSAQRWGRSRSPQRRGRSR 535
Query: 209 GPRR 212
P+R
Sbjct: 536 SPQR 539
Score = 33.9 bits (76), Expect = 0.12
Identities = 38/142 (26%), Positives = 51/142 (35%), Gaps = 14/142 (9%)
Query: 84 TGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGA 143
T AK + +SSSS S+ ++ + S+ +P A+ A
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQA 2658
Query: 144 LRAATLPGSPA----RLSSPSLCLASNFASRYPLRRRPLSRRSPGWSPAPRGRRGYGKFG 199
L P P R SP + S SR L P+ RR P P+PR
Sbjct: 2659 LPKPASPKKPPPGERRSRSPRKPIDSLRDSR-SLSYSPVERRRPSPQPSPR--------- 2708
Query: 200 DWREKGFGGGPRRGARGASSLP 221
D + G RRG RG S P
Sbjct: 2709 DQQSSSSERGSRRGQRGDSRSP 2730
Score = 29.3 bits (64), Expect = 3.0
Identities = 23/72 (31%), Positives = 30/72 (41%), Gaps = 5/72 (6%)
Query: 126 SALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFASRYPLRRR-----PLSR 180
S + + G +R AR + P + R S + SR P RRR P R
Sbjct: 543 SRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRR 602
Query: 181 RSPGWSPAPRGR 192
RS +PA RGR
Sbjct: 603 RSRSRTPARRGR 614
Score = 28.1 bits (61), Expect = 6.7
Identities = 31/128 (24%), Positives = 49/128 (38%), Gaps = 17/128 (13%)
Query: 79 PYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKK------- 131
P +G+ +D P R S S P P P + R + S+ K +
Sbjct: 1593 PRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGS 1652
Query: 132 -------KNPGTARLARGALRAATLPGSPARLSSPSLCLASNFASRYPLRRRPLSRRSPG 184
++P +R AR R++ P + +R S+ +S R+ LSRRS
Sbjct: 1653 SSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRR---RSSRSSPELTRKARLSRRSRS 1709
Query: 185 WSPAPRGR 192
S +P R
Sbjct: 1710 ASSSPETR 1717
Score = 27.7 bits (60), Expect = 8.8
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 169 SRYPLRRR-----PLSRRSPGWSPAPRGRRGYGKFGDWREKGFGGGPRRGARGASSLP 221
SR P RRR P+ RRS SPA R R + R + P R R S P
Sbjct: 617 SRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTP 674
>gi|169212869 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 33.5 bits (75), Expect = 0.16
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 109 PPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRA-------ATLPGSPARLSSPSL 161
PP+ P G +++ +PGTA R LRA LP P + ++ L
Sbjct: 27 PPAAPAETGPRDGSHAPE--RERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASGL 84
Query: 162 CLASNFASRYPLRRRPL---SRRSPGWSPAPRGRRGY 195
CLAS +R P R + SRR G+R +
Sbjct: 85 CLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRAW 121
>gi|113427839 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 33.5 bits (75), Expect = 0.16
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 109 PPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRA-------ATLPGSPARLSSPSL 161
PP+ P G +++ +PGTA R LRA LP P + ++ L
Sbjct: 27 PPAAPAETGPRDGSHAPE--RERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASGL 84
Query: 162 CLASNFASRYPLRRRPL---SRRSPGWSPAPRGRRGY 195
CLAS +R P R + SRR G+R +
Sbjct: 85 CLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRAW 121
>gi|113427667 PREDICTED: hypothetical protein [Homo sapiens]
Length = 122
Score = 33.5 bits (75), Expect = 0.16
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 109 PPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRA-------ATLPGSPARLSSPSL 161
PP+ P G +++ +PGTA R LRA LP P + ++ L
Sbjct: 27 PPAAPAETGPRDGSHAPE--RERHSPGTATRIRAPLRAPRCRYHTTLLPREPLKTTASGL 84
Query: 162 CLASNFASRYPLRRRPL---SRRSPGWSPAPRGRRGY 195
CLAS +R P R + SRR G+R +
Sbjct: 85 CLASRKEARSPFLARRVGLTSRRGDREGSRQCGQRAW 121
>gi|215820635 protein phosphatase 1, regulatory subunit 13 like
[Homo sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.21
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 90 AEDGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTARLAR 141
A GPP A + + PP PS + P + +++ S L+K +P AR AR
Sbjct: 575 ARAGPPAPA--PPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRAR 624
>gi|63003907 protein phosphatase 1, regulatory subunit 13 like [Homo
sapiens]
Length = 828
Score = 33.1 bits (74), Expect = 0.21
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 90 AEDGPPVDARTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTARLAR 141
A GPP A + + PP PS + P + +++ S L+K +P AR AR
Sbjct: 575 ARAGPPAPA--PPAPIPPPAPSQSSPPEQPQSMEMRSVLRKAGSPRKARRAR 624
>gi|18079216 CASK interacting protein 1 [Homo sapiens]
Length = 1431
Score = 33.1 bits (74), Expect = 0.21
Identities = 39/141 (27%), Positives = 48/141 (34%), Gaps = 17/141 (12%)
Query: 56 ISQSPGAVWDREPASVPLQTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTT 115
+S S + D P + Y L+ G A PP +AR S P
Sbjct: 703 MSSSQELLGDGPPGPSSPMSRSQEYLLDEGP---APGTPPREARPGRHGHSIKRASVPPV 759
Query: 116 PNMDRGIQVLSALKKKKNPGTARLARGALRAATLPGSPARLS-----SPSLCLASNFASR 170
P R QVL PGT+ T PGSP L +P+
Sbjct: 760 PGKPR--QVLP-------PGTSHFTPPQTPTKTRPGSPQALGGPHGPAPATAKVKPTPQL 810
Query: 171 YPLRRRPLSRRSPGWSPAPRG 191
P RP+S RS SP RG
Sbjct: 811 LPPTERPMSPRSLPQSPTHRG 831
>gi|239756354 PREDICTED: hypothetical protein [Homo sapiens]
Length = 110
Score = 33.1 bits (74), Expect = 0.21
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 99 RTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTAR--LARGALRAATLPGSPA-- 154
R +S+ + P P P G + L+ + R LAR A LP +PA
Sbjct: 4 RKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPS 63
Query: 155 RLSSPSLCLASNFASRYPLRRRPLSRRSPGWSPAP 189
R PS CLA P SRRSP +PAP
Sbjct: 64 RSPDPSKCLAP-----------PRSRRSPLRAPAP 87
>gi|239752695 PREDICTED: hypothetical protein XP_002345326 [Homo
sapiens]
Length = 1014
Score = 33.1 bits (74), Expect = 0.21
Identities = 57/217 (26%), Positives = 77/217 (35%), Gaps = 26/217 (11%)
Query: 10 RETCDHKEEGNSTPAGL-RAEDLQTSRPIG-------DQRPWLGIQMVVVGGLKISQSPG 61
R HKE + PA L + E + R +G DQ W+ V GG + SPG
Sbjct: 190 RSDASHKENVSPKPAALPKPEQRRFRRSLGIGLSGRHDQ--WVPGCQVERGGPAATPSPG 247
Query: 62 AVWDREPASVPLQTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDRG 121
AV D+EP V QT G G V++ S L +
Sbjct: 248 AVLDQEPCRV--QTNLASPGPRLGLALKDTTGQLVNSSFWQQSNLQSLARRRQGKAREFA 305
Query: 122 IQVLS-ALKKKKNPGTARLARGALRAATLPGSP----ARLSSPSLCLASNFASRYPLRRR 176
IQ + ++ + +P G+ LP P L+ PS CL S P
Sbjct: 306 IQQSNLSINETSSPHLCPEPGGSSGPHKLPWGPLLSQEPLARPSSCLRQ---SGLPAPGT 362
Query: 177 PLSRRSPGWSPAP------RGRRGYGKFGDWREKGFG 207
P P + AP G R +G G WR + G
Sbjct: 363 PSGDFRPTEAFAPLDGHTQPGLRSWGGLGSWRSRLVG 399
>gi|239747350 PREDICTED: hypothetical protein XP_002346429 [Homo
sapiens]
Length = 438
Score = 33.1 bits (74), Expect = 0.21
Identities = 31/107 (28%), Positives = 39/107 (36%), Gaps = 10/107 (9%)
Query: 110 PSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFAS 169
P P T G QV++ PG + RGA R T G P L + L S F S
Sbjct: 236 PLKPPTTWHTVGTQVIAEAVPSTKPGESTYRRGARRTHTFRGIPPGLPTWRRLLLSWFNS 295
Query: 170 RYPLRRRPLSRRSPGWSPAPRGRRGYGKFGDWREKGFGGGPRRGARG 216
+ + S G G G GFG G R+G+ G
Sbjct: 296 CPRTLKHAQTHSSTGQEVGGIGEGG----------GFGPGRRKGSPG 332
>gi|239747229 PREDICTED: hypothetical protein XP_002346943 [Homo
sapiens]
Length = 1014
Score = 33.1 bits (74), Expect = 0.21
Identities = 57/217 (26%), Positives = 77/217 (35%), Gaps = 26/217 (11%)
Query: 10 RETCDHKEEGNSTPAGL-RAEDLQTSRPIG-------DQRPWLGIQMVVVGGLKISQSPG 61
R HKE + PA L + E + R +G DQ W+ V GG + SPG
Sbjct: 190 RSDASHKENVSPKPAALPKPEQRRFRRSLGIGLSGRHDQ--WVPGCQVERGGPAATPSPG 247
Query: 62 AVWDREPASVPLQTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDRG 121
AV D+EP V QT G G V++ S L +
Sbjct: 248 AVLDQEPCRV--QTNLASPGPRLGLALKDTTGQLVNSSFWQQSNLQSLARRRQGKAREFA 305
Query: 122 IQVLS-ALKKKKNPGTARLARGALRAATLPGSP----ARLSSPSLCLASNFASRYPLRRR 176
IQ + ++ + +P G+ LP P L+ PS CL S P
Sbjct: 306 IQQSNLSINETSSPHLCPEPGGSSGPHKLPWGPLLSQEPLARPSSCLRQ---SGLPAPGT 362
Query: 177 PLSRRSPGWSPAP------RGRRGYGKFGDWREKGFG 207
P P + AP G R +G G WR + G
Sbjct: 363 PSGDFRPTEAFAPLDGHTQPGLRSWGGLGSWRSRLVG 399
>gi|239745240 PREDICTED: hypothetical protein XP_002343395 [Homo
sapiens]
Length = 110
Score = 33.1 bits (74), Expect = 0.21
Identities = 31/95 (32%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 99 RTSSSSVLPPPPSTPTTPNMDRGIQVLSALKKKKNPGTAR--LARGALRAATLPGSPA-- 154
R +S+ + P P P G + L+ + R LAR A LP +PA
Sbjct: 4 RKTSTVLEEVMPHWPMAPVAREGPARRAGLRSPRERQWRRRLLARNCTACAALPAAPAPS 63
Query: 155 RLSSPSLCLASNFASRYPLRRRPLSRRSPGWSPAP 189
R PS CLA P SRRSP +PAP
Sbjct: 64 RSPDPSKCLAP-----------PRSRRSPLRAPAP 87
>gi|239741037 PREDICTED: hypothetical protein XP_002342072 [Homo
sapiens]
Length = 1014
Score = 33.1 bits (74), Expect = 0.21
Identities = 57/217 (26%), Positives = 77/217 (35%), Gaps = 26/217 (11%)
Query: 10 RETCDHKEEGNSTPAGL-RAEDLQTSRPIG-------DQRPWLGIQMVVVGGLKISQSPG 61
R HKE + PA L + E + R +G DQ W+ V GG + SPG
Sbjct: 190 RSDASHKENVSPKPAALPKPEQRRFRRSLGIGLSGRHDQ--WVPGCQVERGGPAATPSPG 247
Query: 62 AVWDREPASVPLQTTWDPYSLETGAKENAEDGPPVDARTSSSSVLPPPPSTPTTPNMDRG 121
AV D+EP V QT G G V++ S L +
Sbjct: 248 AVLDQEPCRV--QTNLASPGPRLGLALKDTTGQLVNSSFWQQSNLQSLARRRQGKAREFA 305
Query: 122 IQVLS-ALKKKKNPGTARLARGALRAATLPGSP----ARLSSPSLCLASNFASRYPLRRR 176
IQ + ++ + +P G+ LP P L+ PS CL S P
Sbjct: 306 IQQSNLSINETSSPHLCPEPGGSSGPHKLPWGPLLSQEPLARPSSCLRQ---SGLPAPGT 362
Query: 177 PLSRRSPGWSPAP------RGRRGYGKFGDWREKGFG 207
P P + AP G R +G G WR + G
Sbjct: 363 PSGDFRPTEAFAPLDGHTQPGLRSWGGLGSWRSRLVG 399
>gi|239740906 PREDICTED: hypothetical protein XP_002344082 [Homo
sapiens]
Length = 138
Score = 33.1 bits (74), Expect = 0.21
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 109 PPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFA 168
PP P TP G+ PG+ + G P P RL L S
Sbjct: 39 PPHLPPTPG-SLGL-----------PGSGHGSSGPAPPPASPSHPHRLPLQPLGFLSFLV 86
Query: 169 SRYPLRRRP---LSRRSPGWSPAPRGRRGY------GKFGDW 201
S +RP LSR GW P PRG+ + GDW
Sbjct: 87 SSPTHLQRPPPLLSRCDLGWGPTPRGQSWWRRESPSSSLGDW 128
>gi|239740786 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 33.1 bits (74), Expect = 0.21
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 109 PPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFA 168
PP P TP G+ PG+ + G P P RL L S
Sbjct: 39 PPHLPPTPG-SLGL-----------PGSGHGSSGPAPPPASPSHPHRLPLQPLGFLSFLV 86
Query: 169 SRYPLRRRP---LSRRSPGWSPAPRGRRGY------GKFGDW 201
S +RP LSR GW P PRG+ + GDW
Sbjct: 87 SSPTHLQRPPPLLSRCDLGWGPTPRGQSWWRRESPSSSLGDW 128
>gi|239740731 PREDICTED: hypothetical protein [Homo sapiens]
Length = 138
Score = 33.1 bits (74), Expect = 0.21
Identities = 30/102 (29%), Positives = 36/102 (35%), Gaps = 21/102 (20%)
Query: 109 PPSTPTTPNMDRGIQVLSALKKKKNPGTARLARGALRAATLPGSPARLSSPSLCLASNFA 168
PP P TP G+ PG+ + G P P RL L S
Sbjct: 39 PPHLPPTPG-SLGL-----------PGSGHGSSGPAPPPASPSHPHRLPLQPLGFLSFLV 86
Query: 169 SRYPLRRRP---LSRRSPGWSPAPRGRRGY------GKFGDW 201
S +RP LSR GW P PRG+ + GDW
Sbjct: 87 SSPTHLQRPPPLLSRCDLGWGPTPRGQSWWRRESPSSSLGDW 128
>gi|58761498 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 186 SPAPRGRRGYGKFGDWREKGFGGGPRRGARG 216
S + RGRRG G FG R GFGG G G
Sbjct: 190 SSSQRGRRGSGNFGGGRGDGFGGNDNFGRGG 220
>gi|58761496 heterogeneous nuclear ribonucleoprotein A1-like [Homo
sapiens]
Length = 320
Score = 33.1 bits (74), Expect = 0.21
Identities = 16/31 (51%), Positives = 17/31 (54%)
Query: 186 SPAPRGRRGYGKFGDWREKGFGGGPRRGARG 216
S + RGRRG G FG R GFGG G G
Sbjct: 190 SSSQRGRRGSGNFGGGRGDGFGGNDNFGRGG 220
>gi|169165603 PREDICTED: similar to proline rich 20 [Homo sapiens]
Length = 210
Score = 32.7 bits (73), Expect = 0.27
Identities = 17/38 (44%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 172 PLRRRPLSRRSPGWSPAPRGRRGYGKFGDWREKGFGGG 209
P+RR P +R P PA RG+RG G + R +G G G
Sbjct: 51 PMRREPPARAQPA-PPAGRGQRGGGSWRAGRGRGSGAG 87
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.134 0.429
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,107,652
Number of Sequences: 37866
Number of extensions: 676440
Number of successful extensions: 4697
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 270
Number of HSP's that attempted gapping in prelim test: 4353
Number of HSP's gapped (non-prelim): 613
length of query: 233
length of database: 18,247,518
effective HSP length: 99
effective length of query: 134
effective length of database: 14,498,784
effective search space: 1942837056
effective search space used: 1942837056
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.