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Search of human proteins with 239755867
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755867 PREDICTED: hypothetical protein [Homo sapiens]
(93 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755867 PREDICTED: hypothetical protein [Homo sapiens] 196 3e-51
gi|239750351 PREDICTED: hypothetical protein XP_002347378 [Homo ... 196 3e-51
gi|239744655 PREDICTED: hypothetical protein XP_002343216 [Homo ... 193 2e-50
gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens] 37 0.003
gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo ... 37 0.003
gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens] 37 0.003
gi|169172209 PREDICTED: hypothetical protein [Homo sapiens] 33 0.065
gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo ... 33 0.065
gi|169170953 PREDICTED: hypothetical protein [Homo sapiens] 33 0.065
gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo ... 33 0.065
gi|239508753 PREDICTED: hypothetical protein [Homo sapiens] 33 0.065
gi|226437579 NAC alpha domain containing [Homo sapiens] 32 0.084
gi|239754540 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.084
gi|239749105 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.084
gi|239743134 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.084
gi|239508792 PREDICTED: NAC alpha domain containing [Homo sapiens] 32 0.084
gi|122937321 UNC homeobox [Homo sapiens] 32 0.084
gi|126090909 engrailed homeobox 1 [Homo sapiens] 32 0.11
gi|169165712 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|88971283 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|41146634 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 31 0.19
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 31 0.19
gi|32479521 dishevelled 1 [Homo sapiens] 31 0.19
gi|239755899 PREDICTED: hypothetical protein [Homo sapiens] 31 0.19
gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo ... 31 0.19
gi|34304381 inversin isoform a [Homo sapiens] 31 0.19
gi|34304379 inversin isoform b [Homo sapiens] 31 0.19
gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens] 31 0.19
gi|214831730 fatty acid desaturase 1 [Homo sapiens] 31 0.25
>gi|239755867 PREDICTED: hypothetical protein [Homo sapiens]
Length = 93
Score = 196 bits (499), Expect = 3e-51
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL
Sbjct: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
Query: 61 GGAPRFCASEGAGGPLPRLGRLLPSGQGVRWRN 93
GGAPRFCASEGAGGPLPRLGRLLPSGQGVRWRN
Sbjct: 61 GGAPRFCASEGAGGPLPRLGRLLPSGQGVRWRN 93
>gi|239750351 PREDICTED: hypothetical protein XP_002347378 [Homo
sapiens]
Length = 93
Score = 196 bits (499), Expect = 3e-51
Identities = 93/93 (100%), Positives = 93/93 (100%)
Query: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL
Sbjct: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
Query: 61 GGAPRFCASEGAGGPLPRLGRLLPSGQGVRWRN 93
GGAPRFCASEGAGGPLPRLGRLLPSGQGVRWRN
Sbjct: 61 GGAPRFCASEGAGGPLPRLGRLLPSGQGVRWRN 93
>gi|239744655 PREDICTED: hypothetical protein XP_002343216 [Homo
sapiens]
Length = 93
Score = 193 bits (491), Expect = 2e-50
Identities = 92/93 (98%), Positives = 92/93 (98%)
Query: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL
Sbjct: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
Query: 61 GGAPRFCASEGAGGPLPRLGRLLPSGQGVRWRN 93
GGAPR CASEGAGGPLPRLGRLLPSGQGVRWRN
Sbjct: 61 GGAPRSCASEGAGGPLPRLGRLLPSGQGVRWRN 93
>gi|169172132 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 528
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 3 GAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGAR-----QFGPHAASRRA 54
GAGGG EPRF PL R +A+ GP+ G A + AR Q GP A++ RA
Sbjct: 240 GAGGGPQEPRF--PLRRREARSAVVAGPRREGSARSRRAARRRRQLQPGPPASAERA 294
>gi|239743053 PREDICTED: hypothetical protein XP_002342748 [Homo
sapiens]
Length = 591
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 3 GAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGAR-----QFGPHAASRRA 54
GAGGG EPRF PL R +A+ GP+ G A + AR Q GP A++ RA
Sbjct: 232 GAGGGPQEPRF--PLRRREARSAVVAGPRREGSARSRRAARRRRQLQPGPPASAERA 286
>gi|113419423 PREDICTED: similar to forkhead box L2 [Homo sapiens]
Length = 387
Score = 37.4 bits (85), Expect = 0.003
Identities = 25/57 (43%), Positives = 31/57 (54%), Gaps = 7/57 (12%)
Query: 3 GAGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGAR-----QFGPHAASRRA 54
GAGGG EPRF PL R +A+ GP+ G A + AR Q GP A++ RA
Sbjct: 7 GAGGGPQEPRF--PLRRREARSAVVAGPRREGSARSRRAARRRRQLQPGPPASAERA 61
>gi|169172209 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 4 AGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGA 63
AG + PR C P GP RG G+ + + G A R G
Sbjct: 11 AGNEERDQVLADARPRRCCVVEAP-GPMPRGWILPGARSEERGARLAESRGR-----GVT 64
Query: 64 PRFCAS-EGAGGPLPRLGRLLP 84
PR S + AGGPL G LLP
Sbjct: 65 PRASWSRQPAGGPLSSEGHLLP 86
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 1 MRGAGGGRAEPRF-----TKPLPRACIPAALPCGPQTRG---------QAAAGSGARQFG 46
+R GGG E R +P+ RA + G RG + GA+QFG
Sbjct: 107 VRAGGGGTGEVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERRVAEGAQQFG 166
Query: 47 PHAASRRAAVQGVLGGAPRFCASEGAGG 74
P R+ A + + A R G GG
Sbjct: 167 PRVGLRQHAER--VERAQRAAEGRGGGG 192
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 23 PAALPCGPQTRGQAAAGSGARQFGPHAASR-----RAAVQGVLGGAPRFCASEGAGGPLP 77
P + P P+ G A P A R R +L PR C + P+P
Sbjct: 720 PLSAPSAPRRLGDKAQLPNCCLGAPPTADRQRRKSRRVPASLLARIPRLCPEQRPQSPIP 779
Query: 78 RLGRLLPSG 86
R G+ +P G
Sbjct: 780 R-GQPVPPG 787
>gi|239748051 PREDICTED: hypothetical protein XP_002346521 [Homo
sapiens]
Length = 213
Score = 32.7 bits (73), Expect = 0.065
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQ----TRGQAAAGSGARQFGPHAASR---- 52
MRG A PR R+ PA LP + + AA + ARQ P AAS
Sbjct: 1 MRGLRASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREG 60
Query: 53 RAAVQGVLGGAPRFCASEGAGGPLPRLGRLLPS 85
AA G G P AS P PR R +P+
Sbjct: 61 SAAPDGARGSTPGLAASRELSPP-PRAPRTVPA 92
>gi|169170953 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 4 AGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGA 63
AG + PR C P GP RG G+ + + G A R G
Sbjct: 11 AGNEERDQVLADARPRRCCVVEAP-GPMPRGWILPGARSEERGARLAESRGR-----GVT 64
Query: 64 PRFCAS-EGAGGPLPRLGRLLP 84
PR S + AGGPL G LLP
Sbjct: 65 PRASWSRQPAGGPLSSEGHLLP 86
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 1 MRGAGGGRAEPRF-----TKPLPRACIPAALPCGPQTRG---------QAAAGSGARQFG 46
+R GGG E R +P+ RA + G RG + GA+QFG
Sbjct: 107 VRAGGGGTGEVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERRVAEGAQQFG 166
Query: 47 PHAASRRAAVQGVLGGAPRFCASEGAGG 74
P R+ A + + A R G GG
Sbjct: 167 PRVGLRQHAER--VERAQRAAEGRGGGG 192
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 23 PAALPCGPQTRGQAAAGSGARQFGPHAASR-----RAAVQGVLGGAPRFCASEGAGGPLP 77
P + P P+ G A P A R R +L PR C + P+P
Sbjct: 720 PLSAPSAPRRLGDKAQLPNCCLGAPPTADRQRRKSRRVPASLLARIPRLCPEQRPQSPIP 779
Query: 78 RLGRLLPSG 86
R G+ +P G
Sbjct: 780 R-GQPVPPG 787
>gi|239741944 PREDICTED: hypothetical protein XP_002342359 [Homo
sapiens]
Length = 213
Score = 32.7 bits (73), Expect = 0.065
Identities = 32/93 (34%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 1 MRGAGGGRAEPRFTKPLPRACIPAALPCGPQ----TRGQAAAGSGARQFGPHAASR---- 52
MRG A PR R+ PA LP + + AA + ARQ P AAS
Sbjct: 1 MRGLRASGASPRPRSSPARSHPPAPLPFPERLPRPAAKEPAARTPARQVFPAAASAGREG 60
Query: 53 RAAVQGVLGGAPRFCASEGAGGPLPRLGRLLPS 85
AA G G P AS P PR R +P+
Sbjct: 61 SAAPDGARGSTPGLAASRELSPP-PRAPRTVPA 92
>gi|239508753 PREDICTED: hypothetical protein [Homo sapiens]
Length = 801
Score = 32.7 bits (73), Expect = 0.065
Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 4 AGGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGA 63
AG + PR C P GP RG G+ + + G A R G
Sbjct: 11 AGNEERDQVLADARPRRCCVVEAP-GPMPRGWILPGARSEERGARLAESRGR-----GVT 64
Query: 64 PRFCAS-EGAGGPLPRLGRLLP 84
PR S + AGGPL G LLP
Sbjct: 65 PRASWSRQPAGGPLSSEGHLLP 86
Score = 29.6 bits (65), Expect = 0.55
Identities = 25/88 (28%), Positives = 34/88 (38%), Gaps = 16/88 (18%)
Query: 1 MRGAGGGRAEPRF-----TKPLPRACIPAALPCGPQTRG---------QAAAGSGARQFG 46
+R GGG E R +P+ RA + G RG + GA+QFG
Sbjct: 107 VRAGGGGTGEVRGGGSPGRQPVGRAAVTGEAGAGAAGRGAQSVRGPGVERRVAEGAQQFG 166
Query: 47 PHAASRRAAVQGVLGGAPRFCASEGAGG 74
P R+ A + + A R G GG
Sbjct: 167 PRVGLRQHAER--VERAQRAAEGRGGGG 192
Score = 26.2 bits (56), Expect = 6.0
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 6/69 (8%)
Query: 23 PAALPCGPQTRGQAAAGSGARQFGPHAASR-----RAAVQGVLGGAPRFCASEGAGGPLP 77
P + P P+ G A P A R R +L PR C + P+P
Sbjct: 720 PLSAPSAPRRLGDKAQLPNCCLGAPPTADRQRRKSRRVPASLLARIPRLCPEQRPQSPIP 779
Query: 78 RLGRLLPSG 86
R G+ +P G
Sbjct: 780 R-GQPVPPG 787
>gi|226437579 NAC alpha domain containing [Homo sapiens]
Length = 1562
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/82 (36%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGAP 64
GG R EP P P LP P R Q P AS A GGAP
Sbjct: 36 GGDRREPCALTPGPSHLALTFLPSKPGARPQ-----------PEGASWDAGP----GGAP 80
Query: 65 RFCASEGAGGPLPRLGRLLPSG 86
A G GGP P LLP G
Sbjct: 81 SAWADPGEGGPSP---MLLPEG 99
>gi|239754540 PREDICTED: NAC alpha domain containing [Homo
sapiens]
Length = 1522
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/82 (36%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGAP 64
GG R EP P P LP P R Q P AS A GGAP
Sbjct: 36 GGDRREPCALTPGPSHLALTFLPSKPGARPQ-----------PEGASWDAGP----GGAP 80
Query: 65 RFCASEGAGGPLPRLGRLLPSG 86
A G GGP P LLP G
Sbjct: 81 SAWADPGEGGPSP---MLLPEG 99
>gi|239749105 PREDICTED: NAC alpha domain containing [Homo
sapiens]
Length = 1522
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/82 (36%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGAP 64
GG R EP P P LP P R Q P AS A GGAP
Sbjct: 36 GGDRREPCALTPGPSHLALTFLPSKPGARPQ-----------PEGASWDAGP----GGAP 80
Query: 65 RFCASEGAGGPLPRLGRLLPSG 86
A G GGP P LLP G
Sbjct: 81 SAWADPGEGGPSP---MLLPEG 99
>gi|239743134 PREDICTED: NAC alpha domain containing [Homo
sapiens]
Length = 1562
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/82 (36%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGAP 64
GG R EP P P LP P R Q P AS A GGAP
Sbjct: 36 GGDRREPCALTPGPSHLALTFLPSKPGARPQ-----------PEGASWDAGP----GGAP 80
Query: 65 RFCASEGAGGPLPRLGRLLPSG 86
A G GGP P LLP G
Sbjct: 81 SAWADPGEGGPSP---MLLPEG 99
>gi|239508792 PREDICTED: NAC alpha domain containing [Homo
sapiens]
Length = 1522
Score = 32.3 bits (72), Expect = 0.084
Identities = 30/82 (36%), Positives = 30/82 (36%), Gaps = 18/82 (21%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGAP 64
GG R EP P P LP P R Q P AS A GGAP
Sbjct: 36 GGDRREPCALTPGPSHLALTFLPSKPGARPQ-----------PEGASWDAGP----GGAP 80
Query: 65 RFCASEGAGGPLPRLGRLLPSG 86
A G GGP P LLP G
Sbjct: 81 SAWADPGEGGPSP---MLLPEG 99
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 32.3 bits (72), Expect = 0.084
Identities = 25/68 (36%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 3 GAGGGRAEPRFTKPLPRACIPAALP-----CGPQTRGQAAAGSGARQFGPHAASRRAAVQ 57
GA G P P P C PA P GPQ R A A GP AA AAV+
Sbjct: 263 GAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKDAASCGPGAAV--AAVE 320
Query: 58 GVLGGAPR 65
G P+
Sbjct: 321 RGAAGLPK 328
>gi|126090909 engrailed homeobox 1 [Homo sapiens]
Length = 392
Score = 32.0 bits (71), Expect = 0.11
Identities = 27/73 (36%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 21 CIPAALPCGPQTRGQ-AAAGSGARQFGPHAASRRAAVQGVLGGAPRFCAS-EGAGGPLPR 78
C P A CGP Q AAAG+GA + G AA+ AA V A A GG
Sbjct: 171 CAPDA-NCGPPDGSQPAAAGAGASKAGNPAAAAAAAAAAVAAAAAAAAAKPSDTGGGGSG 229
Query: 79 LGRLLPSGQGVRW 91
G P QG ++
Sbjct: 230 GGAGSPGAQGTKY 242
>gi|169165712 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTR-GQAAAGSGARQFGPHAASRRAAVQGVLGGA 63
G G T+PL A ALP GQAAA A + AA A+ +L
Sbjct: 22 GAGACSSAATEPLGLARPLLALPDACDACWGQAAAVPSADR---RAAPASRALHQLLPDK 78
Query: 64 PRFCASEGAGGPLPRLGRLLPSGQG 88
P FCA G P R R GQG
Sbjct: 79 PNFCAGFGLAEPERRTARSPGGGQG 103
>gi|88971283 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTR-GQAAAGSGARQFGPHAASRRAAVQGVLGGA 63
G G T+PL A ALP GQAAA A + AA A+ +L
Sbjct: 22 GAGACSSAATEPLGLARPLLALPDACDACWGQAAAVPSADR---RAAPASRALHQLLPDK 78
Query: 64 PRFCASEGAGGPLPRLGRLLPSGQG 88
P FCA G P R R GQG
Sbjct: 79 PNFCAGFGLAEPERRTARSPGGGQG 103
>gi|41146634 PREDICTED: hypothetical protein [Homo sapiens]
Length = 199
Score = 32.0 bits (71), Expect = 0.11
Identities = 30/85 (35%), Positives = 34/85 (40%), Gaps = 4/85 (4%)
Query: 5 GGGRAEPRFTKPLPRACIPAALPCGPQTR-GQAAAGSGARQFGPHAASRRAAVQGVLGGA 63
G G T+PL A ALP GQAAA A + AA A+ +L
Sbjct: 22 GAGACSSAATEPLGLARPLLALPDACDACWGQAAAVPSADR---RAAPASRALHQLLPDK 78
Query: 64 PRFCASEGAGGPLPRLGRLLPSGQG 88
P FCA G P R R GQG
Sbjct: 79 PNFCAGFGLAEPERRTARSPGGGQG 103
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 3 GAGG--GRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
GA G G A P + A P P P + G A A G A A G+
Sbjct: 369 GAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI- 427
Query: 61 GGAPRFCASEGAGGPLPRLGRLLPSGQ 87
GAP F G GP G L P GQ
Sbjct: 428 AGAPGFPGPRGPPGPQGATGPLGPKGQ 454
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 31.2 bits (69), Expect = 0.19
Identities = 29/87 (33%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 3 GAGG--GRAEPRFTKPLPRACIPAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVL 60
GA G G A P + A P P P + G A A G A A G+
Sbjct: 300 GAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAKGSAGAPGI- 358
Query: 61 GGAPRFCASEGAGGPLPRLGRLLPSGQ 87
GAP F G GP G L P GQ
Sbjct: 359 AGAPGFPGPRGPPGPQGATGPLGPKGQ 385
>gi|32479521 dishevelled 1 [Homo sapiens]
Length = 670
Score = 31.2 bits (69), Expect = 0.19
Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 16 PLPRACIPAALPCGPQTRGQAAAGS----GARQFGPHAASRRAAVQGVLGGAPRFCASEG 71
P P C P A + G + GS G++ G +SRRA G + + G
Sbjct: 518 PGPPPCFPPAYQDPGFSYGSGSTGSQQSEGSKSSGSTRSSRRAP------GREKERRAAG 571
Query: 72 AGGPLPRLGRLLPSGQGVRWR 92
AGG PSG G WR
Sbjct: 572 AGGSGSESDHTAPSGVGSSWR 592
>gi|239755899 PREDICTED: hypothetical protein [Homo sapiens]
Length = 459
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/67 (41%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 23 PAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGAPRFCASEGAGGPLPRLGRL 82
P ALPC P RGQ A A+ R A QG APR A A GP L RL
Sbjct: 166 PRALPC-PFGRGQLPACCSP-------ATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRL 217
Query: 83 --LPSGQ 87
LPS +
Sbjct: 218 DKLPSSR 224
>gi|239750388 PREDICTED: hypothetical protein XP_002347412 [Homo
sapiens]
Length = 459
Score = 31.2 bits (69), Expect = 0.19
Identities = 28/67 (41%), Positives = 30/67 (44%), Gaps = 10/67 (14%)
Query: 23 PAALPCGPQTRGQAAAGSGARQFGPHAASRRAAVQGVLGGAPRFCASEGAGGPLPRLGRL 82
P ALPC P RGQ A A+ R A QG APR A A GP L RL
Sbjct: 166 PRALPC-PFGRGQLPACCSP-------ATVRPAAQGCAQPAPRVAAGTPAVGPTLALRRL 217
Query: 83 --LPSGQ 87
LPS +
Sbjct: 218 DKLPSSR 224
>gi|34304381 inversin isoform a [Homo sapiens]
Length = 1065
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 9 AEPRFTKPLPRACIPAALPCGPQTRG-----------QAAAGSGARQFGPHAASRRAAVQ 57
AE + + P +C P ALPC P T+ Q AG+ A+ GP R +
Sbjct: 606 AEQQKGRRSPDSCRPQALPCLPSTQDVPSRQSRAPSKQPPAGNVAQ--GPEPRDSRGSPG 663
Query: 58 GVLGGA 63
G LGGA
Sbjct: 664 GSLGGA 669
>gi|34304379 inversin isoform b [Homo sapiens]
Length = 895
Score = 31.2 bits (69), Expect = 0.19
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 9 AEPRFTKPLPRACIPAALPCGPQTRG-----------QAAAGSGARQFGPHAASRRAAVQ 57
AE + + P +C P ALPC P T+ Q AG+ A+ GP R +
Sbjct: 606 AEQQKGRRSPDSCRPQALPCLPSTQDVPSRQSRAPSKQPPAGNVAQ--GPEPRDSRGSPG 663
Query: 58 GVLGGA 63
G LGGA
Sbjct: 664 GSLGGA 669
>gi|170932550 FLT3-interacting zinc finger 1 [Homo sapiens]
Length = 496
Score = 31.2 bits (69), Expect = 0.19
Identities = 24/56 (42%), Positives = 27/56 (48%), Gaps = 9/56 (16%)
Query: 37 AAGSGARQFGPHAASRRAAVQGVLGGAP----RFCASEGAGGPLPRLGRLLPSGQG 88
AAG GA GP A A + G AP R AGG +P+LG LLP G G
Sbjct: 264 AAGPGA---GPETAGEGTAAEA--GDAPLASDRRLLLGPAGGGVPKLGGLLPEGGG 314
>gi|214831730 fatty acid desaturase 1 [Homo sapiens]
Length = 501
Score = 30.8 bits (68), Expect = 0.25
Identities = 25/72 (34%), Positives = 28/72 (38%), Gaps = 12/72 (16%)
Query: 19 RACIPAALPCGPQTRGQAAAGSGARQ----FGPHAASRR-AAVQGVLGGAPR-------F 66
RA PA LPCG + + GARQ + P S R A G G R
Sbjct: 4 RAARPAGLPCGAENPARRRLALGARQQIHSWSPRTPSTRLTAPAGPARGVARPAMAPDPV 63
Query: 67 CASEGAGGPLPR 78
A A GP PR
Sbjct: 64 AAETAAQGPTPR 75
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.140 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,898,686
Number of Sequences: 37866
Number of extensions: 276738
Number of successful extensions: 1403
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 173
Number of HSP's that attempted gapping in prelim test: 1277
Number of HSP's gapped (non-prelim): 294
length of query: 93
length of database: 18,247,518
effective HSP length: 64
effective length of query: 29
effective length of database: 15,824,094
effective search space: 458898726
effective search space used: 458898726
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.