Guide to the Human Genome
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Name: LOC100292928 Sequence: fasta or formatted (93aa) NCBI GI: 239755867
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            17.2         16           3
 C cysteine            3.2          3           1
 D aspartate           0.0          0           0
 E glutamate           2.2          2           1
 F phenylalanine       3.2          3           1
 G glycine            19.4         18           3
 H histidine           1.1          1           1
 I isoleucine          1.1          1           1
 K lysine              1.1          1           1
 L leucine             7.5          7           2
 M methionine          1.1          1           1
 N asparagine          1.1          1           1
 P proline            11.8         11           1
 Q glutamine           5.4          5           1
 R arginine           14.0         13           2
 S serine              4.3          4           1
 T threonine           2.2          2           1
 V valine              3.2          3           1
 W tryptophan          1.1          1           1
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100289882          1.000   PREDICTED: hypothetical protein XP_002347378 
LOC100289313          0.982   PREDICTED: hypothetical protein XP_002343216 
LOC651986             0.070   PREDICTED: similar to forkhead box L2 
LOC100288524          0.070   PREDICTED: hypothetical protein XP_002342748 
LOC651986             0.070   PREDICTED: similar to forkhead box L2 
LOC100129463          0.047   PREDICTED: hypothetical protein 
LOC100290741          0.047   PREDICTED: hypothetical protein XP_002346521 
LOC100129463          0.047   PREDICTED: hypothetical protein 
LOC100288445          0.047   PREDICTED: hypothetical protein XP_002342359 
LOC100129463          0.047   PREDICTED: hypothetical protein 
NACAD                 0.041   NAC alpha domain containing 
NACAD                 0.041   PREDICTED: NAC alpha domain containing 
NACAD                 0.041   PREDICTED: NAC alpha domain containing 
NACAD                 0.041   PREDICTED: NAC alpha domain containing 
NACAD                 0.041   PREDICTED: NAC alpha domain containing 
UNCX                  0.041   UNC homeobox 
EN1                   0.041   engrailed homeobox 1 
LOC389174             0.041   PREDICTED: hypothetical protein 
LOC389174             0.041   PREDICTED: hypothetical protein 
LOC389174             0.041   PREDICTED: hypothetical protein 
COL2A1                0.035   collagen, type II, alpha 1 isoform 1 precursor [Hom...
COL2A1                0.035   collagen, type II, alpha 1 isoform 2 precursor [Hom...
DVL1                  0.035   dishevelled 1 
LOC100292296          0.035   PREDICTED: hypothetical protein 
LOC100290476          0.035   PREDICTED: hypothetical protein XP_002347412 
INVS                  0.035   inversin isoform a 
INVS                  0.035   inversin isoform b 
FIZ1                  0.035   FLT3-interacting zinc finger 1 
FADS1                 0.035   fatty acid desaturase 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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