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Search of human proteins with 239755724
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755724 PREDICTED: hypothetical protein [Homo sapiens]
(481 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755724 PREDICTED: hypothetical protein [Homo sapiens] 981 0.0
gi|227430289 sodium channel, nonvoltage-gated 1 alpha isoform 2 ... 48 2e-05
gi|227430287 sodium channel, nonvoltage-gated 1 alpha isoform 3 ... 48 2e-05
gi|4506815 sodium channel, nonvoltage-gated 1 alpha isoform 1 [H... 48 2e-05
gi|48928029 trafficking protein particle complex 10 [Homo sapiens] 37 0.040
gi|134288915 myosin IIIB isoform 1 [Homo sapiens] 33 0.44
gi|134288892 myosin IIIB isoform 2 [Homo sapiens] 33 0.44
gi|150010673 hypothetical protein LOC414318 [Homo sapiens] 33 0.75
gi|57864582 hornerin [Homo sapiens] 32 1.7
gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo... 32 1.7
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s... 32 1.7
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s... 32 1.7
gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo s... 32 1.7
gi|239753144 PREDICTED: hypothetical protein [Homo sapiens] 31 2.2
gi|239747710 PREDICTED: hypothetical protein XP_002348232 [Homo ... 31 2.2
gi|239741576 PREDICTED: hypothetical protein XP_002342255 [Homo ... 31 2.2
gi|157427675 ADAM metallopeptidase with thrombospondin type 1 mo... 31 2.2
gi|110611228 utrophin [Homo sapiens] 30 6.4
gi|239751932 PREDICTED: hypothetical protein XP_002348042 [Homo ... 29 8.3
gi|239746417 PREDICTED: hypothetical protein XP_002344207 [Homo ... 29 8.3
gi|34101282 sodium channel, nonvoltage-gated 1, delta isoform 2 ... 29 8.3
gi|194353989 sodium channel, nonvoltage-gated 1, delta isoform 1... 29 8.3
gi|62177127 myosin heavy chain Myr 8 [Homo sapiens] 29 8.3
>gi|239755724 PREDICTED: hypothetical protein [Homo sapiens]
Length = 481
Score = 981 bits (2537), Expect = 0.0
Identities = 481/481 (100%), Positives = 481/481 (100%)
Query: 1 MRNMMTSRSKTSSAISTTDNTEEPNHRLHWLPRLDRRVTICERRAGGHATGSTGPVRRGR 60
MRNMMTSRSKTSSAISTTDNTEEPNHRLHWLPRLDRRVTICERRAGGHATGSTGPVRRGR
Sbjct: 1 MRNMMTSRSKTSSAISTTDNTEEPNHRLHWLPRLDRRVTICERRAGGHATGSTGPVRRGR 60
Query: 61 DPQALQGVRQSPPQVATAAGAGHESGEGAVFVQVKERLLCDAVQLLQLLFNFRVMLTALT 120
DPQALQGVRQSPPQVATAAGAGHESGEGAVFVQVKERLLCDAVQLLQLLFNFRVMLTALT
Sbjct: 61 DPQALQGVRQSPPQVATAAGAGHESGEGAVFVQVKERLLCDAVQLLQLLFNFRVMLTALT 120
Query: 121 PICSGRQPYIGGTEQQGARTLGDLEADTLLSPPLPSLLPRWPPLTEEPMLILTALESSTE 180
PICSGRQPYIGGTEQQGARTLGDLEADTLLSPPLPSLLPRWPPLTEEPMLILTALESSTE
Sbjct: 121 PICSGRQPYIGGTEQQGARTLGDLEADTLLSPPLPSLLPRWPPLTEEPMLILTALESSTE 180
Query: 181 SCMSTFLLSLCWWRPSAGAYPRLRVPSDSSLCVQCNQNKSDCFYQTYSSGVDAGRQSSKL 240
SCMSTFLLSLCWWRPSAGAYPRLRVPSDSSLCVQCNQNKSDCFYQTYSSGVDAGRQSSKL
Sbjct: 181 SCMSTFLLSLCWWRPSAGAYPRLRVPSDSSLCVQCNQNKSDCFYQTYSSGVDAGRQSSKL 240
Query: 241 EAPHFASSELYLGQGCQFPPSGLRLCLPSEHLSTLDHPSRRRHQGRGRGTNRPVGIEGAD 300
EAPHFASSELYLGQGCQFPPSGLRLCLPSEHLSTLDHPSRRRHQGRGRGTNRPVGIEGAD
Sbjct: 241 EAPHFASSELYLGQGCQFPPSGLRLCLPSEHLSTLDHPSRRRHQGRGRGTNRPVGIEGAD 300
Query: 301 GHCGEDELVRVEVDVEADGVAEVLSEKQAELPVHHAKGAEPQHCPEGRLHAVVLGAHQAD 360
GHCGEDELVRVEVDVEADGVAEVLSEKQAELPVHHAKGAEPQHCPEGRLHAVVLGAHQAD
Sbjct: 301 GHCGEDELVRVEVDVEADGVAEVLSEKQAELPVHHAKGAEPQHCPEGRLHAVVLGAHQAD 360
Query: 361 GAVDGGVVAEELEELSVGAVELDQGLLLRRGLLGRRRFGAQPLLLTLVPLHEPWSGLWRA 420
GAVDGGVVAEELEELSVGAVELDQGLLLRRGLLGRRRFGAQPLLLTLVPLHEPWSGLWRA
Sbjct: 361 GAVDGGVVAEELEELSVGAVELDQGLLLRRGLLGRRRFGAQPLLLTLVPLHEPWSGLWRA 420
Query: 421 RVLLLQLVPLHETWYGLQRSRVLLLQLVPLLTLILLMIPPLGRDSWIFLHCPNEETDPSQ 480
RVLLLQLVPLHETWYGLQRSRVLLLQLVPLLTLILLMIPPLGRDSWIFLHCPNEETDPSQ
Sbjct: 421 RVLLLQLVPLHETWYGLQRSRVLLLQLVPLLTLILLMIPPLGRDSWIFLHCPNEETDPSQ 480
Query: 481 G 481
G
Sbjct: 481 G 481
>gi|227430289 sodium channel, nonvoltage-gated 1 alpha isoform 2
[Homo sapiens]
Length = 728
Score = 47.8 bits (112), Expect = 2e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 215 CNQNKSDCFYQTYSSGVDAGRQ 236
CNQNKSDCFYQTYSSGVDA R+
Sbjct: 288 CNQNKSDCFYQTYSSGVDAVRE 309
>gi|227430287 sodium channel, nonvoltage-gated 1 alpha isoform 3
[Homo sapiens]
Length = 692
Score = 47.8 bits (112), Expect = 2e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 215 CNQNKSDCFYQTYSSGVDAGRQ 236
CNQNKSDCFYQTYSSGVDA R+
Sbjct: 252 CNQNKSDCFYQTYSSGVDAVRE 273
>gi|4506815 sodium channel, nonvoltage-gated 1 alpha isoform 1 [Homo
sapiens]
Length = 669
Score = 47.8 bits (112), Expect = 2e-05
Identities = 20/22 (90%), Positives = 21/22 (95%)
Query: 215 CNQNKSDCFYQTYSSGVDAGRQ 236
CNQNKSDCFYQTYSSGVDA R+
Sbjct: 229 CNQNKSDCFYQTYSSGVDAVRE 250
>gi|48928029 trafficking protein particle complex 10 [Homo sapiens]
Length = 1259
Score = 37.0 bits (84), Expect = 0.040
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 385 GLLLRRGLLGRRRFGAQPLLLTLVPLHEPWSGLWRARVLLLQLVPLHETWYGLQRSRVLL 444
GL+LR+ + +R Q TL+ L S L+ + LL L W QR+ LL
Sbjct: 281 GLILRKPIDMEKRESIQRREATLLDLR---SYLFSRQCTLLLF--LQRPWEVAQRALELL 335
Query: 445 LQLVPLLTLILLMIPPLGRDSWIFLHC 471
V L L+ + +PP D W+FL C
Sbjct: 336 HNCVQELKLLEVSVPPGALDCWVFLSC 362
>gi|134288915 myosin IIIB isoform 1 [Homo sapiens]
Length = 1314
Score = 33.5 bits (75), Expect = 0.44
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 290 TNRPVGIEGADGHCGEDELVRVEVDVEADGVAEVLSEKQAELPVH 334
T RP +E A+ +C ED+LV +EV ++ D + L ++ A+L ++
Sbjct: 330 TRRPYHVEDAEKYCLEDDLVNLEV-LDEDTIIHQLQKRYADLLIY 373
>gi|134288892 myosin IIIB isoform 2 [Homo sapiens]
Length = 1341
Score = 33.5 bits (75), Expect = 0.44
Identities = 16/45 (35%), Positives = 29/45 (64%), Gaps = 1/45 (2%)
Query: 290 TNRPVGIEGADGHCGEDELVRVEVDVEADGVAEVLSEKQAELPVH 334
T RP +E A+ +C ED+LV +EV ++ D + L ++ A+L ++
Sbjct: 330 TRRPYHVEDAEKYCLEDDLVNLEV-LDEDTIIHQLQKRYADLLIY 373
>gi|150010673 hypothetical protein LOC414318 [Homo sapiens]
Length = 232
Score = 32.7 bits (73), Expect = 0.75
Identities = 26/75 (34%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Query: 145 EADTLLSPPL--PSLLPRWPPLTEEPMLILTALESSTESCMSTFLLSLCWWRPSAGAYPR 202
EA + +PPL P LPR PL P L + AL S S + L+ PS+ A+
Sbjct: 19 EACSSWNPPLFSPRPLPRLWPLPGTPFLPIRALPFSASSSGKSSLVP----SPSSSAHSG 74
Query: 203 LRVPSDSSLCVQCNQ 217
R P C+ C Q
Sbjct: 75 FRTPCLGPDCLLCTQ 89
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 31.6 bits (70), Expect = 1.7
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 46 GGHATGSTGPVRRGRDPQALQGVRQSPPQVATAAGAGHESGEG 88
G H +GS + GR G RQSP V +G+GH S G
Sbjct: 284 GQHGSGSRQSLGHGRQGS---GSRQSPSHVRHGSGSGHSSSHG 323
>gi|237681091 RNA-specific adenosine deaminase B1 isoform 7 [Homo
sapiens]
Length = 674
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 129 YIGGTEQQGARTLGDLEAD------TLLSPPLPSLLPRWPPLTEEPMLILTA-------- 174
Y+G + GDL +L PPLP L P PP + P++IL
Sbjct: 191 YVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPPFPPPSGKNPVMILNELRPGLKYD 250
Query: 175 -LESSTESCMSTFLLSL 190
L S ES +F++S+
Sbjct: 251 FLSESGESHAKSFVMSV 267
>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
sapiens]
Length = 714
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 129 YIGGTEQQGARTLGDLEAD------TLLSPPLPSLLPRWPPLTEEPMLILTA-------- 174
Y+G + GDL +L PPLP L P PP + P++IL
Sbjct: 191 YVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPPFPPPSGKNPVMILNELRPGLKYD 250
Query: 175 -LESSTESCMSTFLLSL 190
L S ES +F++S+
Sbjct: 251 FLSESGESHAKSFVMSV 267
>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
sapiens]
Length = 741
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 129 YIGGTEQQGARTLGDLEAD------TLLSPPLPSLLPRWPPLTEEPMLILTA-------- 174
Y+G + GDL +L PPLP L P PP + P++IL
Sbjct: 191 YVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPPFPPPSGKNPVMILNELRPGLKYD 250
Query: 175 -LESSTESCMSTFLLSL 190
L S ES +F++S+
Sbjct: 251 FLSESGESHAKSFVMSV 267
>gi|4501919 RNA-specific adenosine deaminase B1 isoform 1 [Homo
sapiens]
Length = 701
Score = 31.6 bits (70), Expect = 1.7
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 15/77 (19%)
Query: 129 YIGGTEQQGARTLGDLEAD------TLLSPPLPSLLPRWPPLTEEPMLILTA-------- 174
Y+G + GDL +L PPLP L P PP + P++IL
Sbjct: 191 YVGSNGDDSFSSSGDLSLSASPVPASLAQPPLPVLPPFPPPSGKNPVMILNELRPGLKYD 250
Query: 175 -LESSTESCMSTFLLSL 190
L S ES +F++S+
Sbjct: 251 FLSESGESHAKSFVMSV 267
>gi|239753144 PREDICTED: hypothetical protein [Homo sapiens]
Length = 407
Score = 31.2 bits (69), Expect = 2.2
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 285 GRGRGTNRPVGIEGA---DGHCGEDELVRVEVDVEADGVAEVLSEKQAELPVHHAKGAEP 341
G G RP EGA H +L R+ V + +A + E HHA G P
Sbjct: 231 GHGHDGQRPRVEEGAVRAAAHQQRHQLARLAQHVALEDLAAARLAR--EEVAHHAVGCAP 288
Query: 342 QHCPEGRL----HAVVLGAHQADGAVDGGVVAEELEELSVGAVE 381
H P R+ HA G H G +G V E L G V+
Sbjct: 289 LHLPVLRVVAESHAAAAGHHTEGG--EGRPVGEGRALLHQGLVD 330
>gi|239747710 PREDICTED: hypothetical protein XP_002348232 [Homo
sapiens]
Length = 407
Score = 31.2 bits (69), Expect = 2.2
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 285 GRGRGTNRPVGIEGA---DGHCGEDELVRVEVDVEADGVAEVLSEKQAELPVHHAKGAEP 341
G G RP EGA H +L R+ V + +A + E HHA G P
Sbjct: 231 GHGHDGQRPRVEEGAVRAAAHQQRHQLARLAQHVALEDLAAARLAR--EEVAHHAVGCAP 288
Query: 342 QHCPEGRL----HAVVLGAHQADGAVDGGVVAEELEELSVGAVE 381
H P R+ HA G H G +G V E L G V+
Sbjct: 289 LHLPVLRVVAESHAAAAGHHTEGG--EGRPVGEGRALLHQGLVD 330
>gi|239741576 PREDICTED: hypothetical protein XP_002342255 [Homo
sapiens]
Length = 407
Score = 31.2 bits (69), Expect = 2.2
Identities = 32/104 (30%), Positives = 40/104 (38%), Gaps = 11/104 (10%)
Query: 285 GRGRGTNRPVGIEGA---DGHCGEDELVRVEVDVEADGVAEVLSEKQAELPVHHAKGAEP 341
G G RP EGA H +L R+ V + +A + E HHA G P
Sbjct: 231 GHGHDGQRPRVEEGAVRAAAHQQRHQLARLAQHVALEDLAAARLAR--EEVAHHAVGCAP 288
Query: 342 QHCPEGRL----HAVVLGAHQADGAVDGGVVAEELEELSVGAVE 381
H P R+ HA G H G +G V E L G V+
Sbjct: 289 LHLPVLRVVAESHAAAAGHHTEGG--EGRPVGEGRALLHQGLVD 330
>gi|157427675 ADAM metallopeptidase with thrombospondin type 1
motif, 4 preproprotein [Homo sapiens]
Length = 837
Score = 31.2 bits (69), Expect = 2.2
Identities = 21/41 (51%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
Query: 390 RGLLGRRRFGAQP-LLLTLVPLHEPWSGLWRARVLLLQLVP 429
RGL GR +GAQP LLL +VPL W +W +LL L+P
Sbjct: 10 RGLAGRWLWGAQPCLLLPIVPL--SWL-VWLLLLLLASLLP 47
>gi|110611228 utrophin [Homo sapiens]
Length = 3433
Score = 29.6 bits (65), Expect = 6.4
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 130 IGGTEQQGARTLGDLEADTLLSPPLPSLLPRWPPLTEEPMLILTALESSTESCMSTFLLS 189
I G Q+ + LG+ E T+L L + RW L + I LE+S E + L+S
Sbjct: 2509 IDGNRQKMVKALGNSEEATMLQHRLDDMNQRWNDLKAKSASIRAHLEASAEK-WNRLLMS 2567
Query: 190 L 190
L
Sbjct: 2568 L 2568
>gi|239751932 PREDICTED: hypothetical protein XP_002348042 [Homo
sapiens]
Length = 131
Score = 29.3 bits (64), Expect = 8.3
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 30 WLPRLDRRVTICERRAGGHATGSTGPVRRGRDPQALQGVRQ--SPPQVATAAGAGHESGE 87
W+ L + R+ G GS+G V+R Q + V++ + P++A G + G
Sbjct: 36 WVKELGNVPRLAARKPGLGVPGSSGAVKR----QGQKWVKELGNIPRLA----VGRDQGL 87
Query: 88 GAVFVQVKERLLCD-AVQLLQLLFNFRVMLTALTPICS 124
G++ LLCD +V LL L +R A P C+
Sbjct: 88 GSLDPGSATELLCDCSVPLLPLSGGYRKADVAHHPACA 125
>gi|239746417 PREDICTED: hypothetical protein XP_002344207 [Homo
sapiens]
Length = 131
Score = 29.3 bits (64), Expect = 8.3
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 11/98 (11%)
Query: 30 WLPRLDRRVTICERRAGGHATGSTGPVRRGRDPQALQGVRQ--SPPQVATAAGAGHESGE 87
W+ L + R+ G GS+G V+R Q + V++ + P++A G + G
Sbjct: 36 WVKELGNVPRLAARKPGLGVPGSSGAVKR----QGQKWVKELGNIPRLA----VGRDQGL 87
Query: 88 GAVFVQVKERLLCD-AVQLLQLLFNFRVMLTALTPICS 124
G++ LLCD +V LL L +R A P C+
Sbjct: 88 GSLDPGSATELLCDCSVPLLPLSGGYRKADVAHHPACA 125
>gi|34101282 sodium channel, nonvoltage-gated 1, delta isoform 2
[Homo sapiens]
Length = 638
Score = 29.3 bits (64), Expect = 8.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 215 CNQNKSDCFYQTYSSGVDA 233
CN DCFY+ Y+SGV A
Sbjct: 210 CNSTGGDCFYRGYTSGVAA 228
>gi|194353989 sodium channel, nonvoltage-gated 1, delta isoform 1
[Homo sapiens]
Length = 704
Score = 29.3 bits (64), Expect = 8.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Query: 215 CNQNKSDCFYQTYSSGVDA 233
CN DCFY+ Y+SGV A
Sbjct: 276 CNSTGGDCFYRGYTSGVAA 294
>gi|62177127 myosin heavy chain Myr 8 [Homo sapiens]
Length = 1858
Score = 29.3 bits (64), Expect = 8.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 150 LSPPLPSLLPRWPPLTEEPMLILTALESSTES 181
+ PP P+LLP PPL P +T +S ES
Sbjct: 1478 IPPPFPNLLPHRPPLLVFPPTPVTCSPASDES 1509
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.136 0.421
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,185,706
Number of Sequences: 37866
Number of extensions: 994209
Number of successful extensions: 3107
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 3084
Number of HSP's gapped (non-prelim): 41
length of query: 481
length of database: 18,247,518
effective HSP length: 106
effective length of query: 375
effective length of database: 14,233,722
effective search space: 5337645750
effective search space used: 5337645750
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.