Guide to the Human Genome
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Name: LOC100288764 Sequence: fasta or formatted (131aa) NCBI GI: 239746417
Description:

PREDICTED: hypothetical protein XP_002344207

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.6         10           2
 C cysteine            3.1          4           1
 D aspartate           3.8          5           1
 E glutamate           2.3          3           1
 F phenylalanine       0.8          1           1
 G glycine            13.0         17           2
 H histidine           2.3          3           2
 I isoleucine          1.5          2           1
 K lysine              6.9          9           1
 L leucine            12.2         16           2
 M methionine          0.8          1           1
 N asparagine          1.5          2           1
 P proline             8.4         11           1
 Q glutamine           4.6          6           1
 R arginine            7.6         10           1
 S serine              6.1          8           2
 T threonine           3.1          4           1
 V valine              9.9         13           2
 W tryptophan          3.1          4           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344207 
LOC100290972          1.000   PREDICTED: hypothetical protein XP_002348042 
ZNF165                0.020   zinc finger protein 165 
TOP1MT                0.020   mitochondrial topoisomerase I 
LOC100292381          0.016   PREDICTED: hypothetical protein 
RUSC2                 0.012   RUN and SH3 domain containing 2 
RUSC2                 0.012   RUN and SH3 domain containing 2 
LOC100133405          0.008   PREDICTED: hypothetical protein 
ATP1A2                0.008   Na+/K+ -ATPase alpha 2 subunit proprotein 
CYP2W1                0.008   cytochrome P450, family 2, subfamily W, polypeptide ...
ATP1A1                0.008   Na+/K+ -ATPase alpha 1 subunit isoform c 
ATP1A1                0.008   Na+/K+ -ATPase alpha 1 subunit isoform d 
ATP1A1                0.008   Na+/K+ -ATPase alpha 1 subunit isoform a 
RBM42                 0.008   RNA binding motif protein 42 
NFYC                  0.008   nuclear transcription factor Y, gamma isoform 5 [Ho...
NFYC                  0.008   nuclear transcription factor Y, gamma isoform 4 [Ho...
NFYC                  0.008   nuclear transcription factor Y, gamma isoform 1 [Ho...
NFYC                  0.008   nuclear transcription factor Y, gamma isoform 3 [Ho...
NFYC                  0.008   nuclear transcription factor Y, gamma isoform 2 [Hom...
ATP1A4                0.008   Na+/K+ -ATPase alpha 4 subunit isoform 1 
ATP1A3                0.004   Na+/K+ -ATPase alpha 3 subunit 
NAV2                  0.004   neuron navigator 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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