Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100292381 Sequence: fasta or formatted (481aa) NCBI GI: 239755724
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         33           2
 C cysteine            2.7         13           1
 D aspartate           4.0         19           1
 E glutamate           7.1         34           2
 F phenylalanine       1.9          9           1
 G glycine             9.1         44           2
 H histidine           3.5         17           2
 I isoleucine          1.9          9           1
 K lysine              1.2          6           1
 L leucine            15.0         72           3
 M methionine          1.5          7           2
 N asparagine          1.7          8           1
 P proline             7.5         36           2
 Q glutamine           5.4         26           2
 R arginine            8.3         40           3
 S serine              7.7         37           2
 T threonine           5.2         25           2
 V valine              6.7         32           2
 W tryptophan          1.7          8           2
 Y tyrosine            1.2          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
SCNN1A                0.024   sodium channel, nonvoltage-gated 1 alpha isoform 2 ...
SCNN1A                0.024   sodium channel, nonvoltage-gated 1 alpha isoform 3 ...
SCNN1A                0.024   sodium channel, nonvoltage-gated 1 alpha isoform 1 [H...
TRAPPC10              0.013   trafficking protein particle complex 10 
MYO3B                 0.008   myosin IIIB isoform 1 
MYO3B                 0.008   myosin IIIB isoform 2 
C9orf106              0.008   hypothetical protein LOC414318 
HRNR                  0.007   hornerin 
ADARB1                0.007   RNA-specific adenosine deaminase B1 isoform 7 [Homo...
ADARB1                0.007   RNA-specific adenosine deaminase B1 isoform 3 
ADARB1                0.007   RNA-specific adenosine deaminase B1 isoform 2 
ADARB1                0.007   RNA-specific adenosine deaminase B1 isoform 1 
LOC100292866          0.006   PREDICTED: hypothetical protein 
LOC100290853          0.006   PREDICTED: hypothetical protein XP_002348232 
LOC100288457          0.006   PREDICTED: hypothetical protein XP_002342255 
ADAMTS4               0.006   ADAM metallopeptidase with thrombospondin type 1 mo...
UTRN                  0.005   utrophin 
LOC100290972          0.004   PREDICTED: hypothetical protein XP_002348042 
LOC100288764          0.004   PREDICTED: hypothetical protein XP_002344207 
SCNN1D                0.004   sodium channel, nonvoltage-gated 1, delta isoform 2 ...
SCNN1D                0.004   sodium channel, nonvoltage-gated 1, delta isoform 1...
MYO16                 0.004   myosin heavy chain Myr 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press