Guide to the Human Genome
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Name: LOC100293160 Sequence: fasta or formatted (195aa) NCBI GI: 239755466
Description:

PREDICTED: similar to TRIMCyp

Referenced in:

Peptidylprolyl Isomerases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         16           4
 C cysteine            2.6          5           1
 D aspartate           4.1          8           1
 E glutamate           7.2         14           1
 F phenylalanine       7.7         15           2
 G glycine             9.2         18           2
 H histidine           3.6          7           2
 I isoleucine          4.1          8           2
 K lysine              9.7         19           2
 L leucine             5.6         11           2
 M methionine          2.6          5           1
 N asparagine          4.6          9           1
 P proline             3.1          6           1
 Q glutamine           2.6          5           1
 R arginine            2.6          5           1
 S serine              8.2         16           2
 T threonine           7.7         15           2
 V valine              5.1         10           2
 W tryptophan          1.0          2           1
 Y tyrosine            0.5          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIMCyp 
PPIA                  0.543   peptidylprolyl isomerase A 
LOC643997             0.516   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.516   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.516   PREDICTED: similar to peptidylprolyl isomerase A is...
LOC342541             0.508   PREDICTED: similar to TRIMCyp 
LOC342541             0.508   PREDICTED: similar to TRIMCyp 
LOC342541             0.508   PREDICTED: similar to TRIMCyp 
LOC390956             0.505   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.505   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.500   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.500   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC643997             0.492   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.492   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.492   PREDICTED: similar to peptidylprolyl isomerase A iso...
PPIAL4G               0.476   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
LOC390956             0.476   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC390956             0.476   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC131055             0.476   PREDICTED: similar to TRIMCyp 
LOC131055             0.476   PREDICTED: similar to TRIMCyp 
LOC131055             0.476   PREDICTED: similar to TRIMCyp 
PPIAL4B               0.471   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.471   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.471   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
PPIAL4E               0.457   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC401859             0.452   PREDICTED: similar to TRIMCyp 
LOC401859             0.452   PREDICTED: similar to TRIMCyp 
LOC126170             0.439   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.439   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.439   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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