Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC126170 Sequence: fasta or formatted (156aa) NCBI GI: 239757228
Description:

PREDICTED: similar to TRIM5/CypA fusion protein

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt mRNA [156aa] PREDICTED: similar to TRIM5/CypA fusion protein
alt mRNA [156aa] PREDICTED: similar to TRIM5/CypA fusion protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.5          7           1
 C cysteine            3.2          5           1
 D aspartate           3.8          6           2
 E glutamate           7.1         11           1
 F phenylalanine       9.6         15           2
 G glycine            14.1         22           2
 H histidine           3.2          5           2
 I isoleucine          7.7         12           2
 K lysine              9.6         15           2
 L leucine             3.2          5           1
 M methionine          2.6          4           1
 N asparagine          6.4         10           1
 P proline             3.2          5           1
 Q glutamine           1.9          3           1
 R arginine            1.9          3           1
 S serine              7.1         11           1
 T threonine           4.5          7           1
 V valine              3.2          5           1
 W tryptophan          1.3          2           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIM5/CypA fusion protein [Ho... 
LOC126170             1.000   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             1.000   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIA                  0.803   peptidylprolyl isomerase A 
LOC643997             0.793   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.793   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.793   PREDICTED: similar to peptidylprolyl isomerase A iso...
LOC342541             0.731   PREDICTED: similar to TRIMCyp 
LOC342541             0.731   PREDICTED: similar to TRIMCyp 
LOC342541             0.731   PREDICTED: similar to TRIMCyp 
PPIAL4G               0.725   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
PPIAL4B               0.722   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.722   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.722   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
LOC650157             0.722   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIAL4E               0.715   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC650157             0.715   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.715   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC390956             0.706   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC390956             0.706   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC390956             0.706   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC131055             0.702   PREDICTED: similar to TRIMCyp 
LOC131055             0.702   PREDICTED: similar to TRIMCyp 
LOC131055             0.702   PREDICTED: similar to TRIMCyp 
LOC401859             0.647   PREDICTED: similar to TRIMCyp 
LOC401859             0.647   PREDICTED: similar to TRIMCyp 
LOC392352             0.631   PREDICTED: similar to TRIMCyp 
LOC392352             0.631   PREDICTED: similar to TRIMCyp 
LOC392352             0.631   PREDICTED: similar to TRIMCyp 
PPIF                  0.621   peptidylprolyl isomerase F precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press