LOC342541 36830

Name: LOC342541	Sequence: fasta or formatted (168aa)		NCBI GI: 89042897
Description: PREDICTED: similar to TRIMCyp		Referenced in: Peptidylprolyl Isomerases
Other entries for this name: alt mRNA [168aa] PREDICTED: similar to TRIMCyp alt mRNA [168aa] PREDICTED: similar to TRIMCyp
Composition: Amino acid Percentage Count Longest homopolymer A alanine 6.0 10 1 C cysteine 3.0 5 1 D aspartate 4.2 7 2 E glutamate 4.2 7 1 F phenylalanine 8.9 15 2 G glycine 12.5 21 2 H histidine 4.2 7 2 I isoleucine 6.0 10 2 K lysine 8.9 15 2 L leucine 4.2 7 1 M methionine 3.6 6 1 N asparagine 6.0 10 1 P proline 4.8 8 1 Q glutamine 2.4 4 1 R arginine 1.8 3 1 S serine 6.5 11 2 T threonine 7.1 12 1 V valine 3.6 6 2 W tryptophan 0.6 1 1 Y tyrosine 1.8 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to TRIMCyp LOC342541 1.000 PREDICTED: similar to TRIMCyp LOC342541 1.000 PREDICTED: similar to TRIMCyp PPIA 0.817 peptidylprolyl isomerase A LOC643997 0.760 PREDICTED: similar to TRIMCyp isoform 1 LOC643997 0.760 PREDICTED: similar to TRIMCyp isoform 2 LOC643997 0.760 PREDICTED: similar to peptidylprolyl isomerase A iso... LOC650157 0.754 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC650157 0.745 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC650157 0.745 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... PPIAL4G 0.730 peptidylprolyl isomerase A (cyclophilin A)-like 4G ... PPIAL4B 0.724 peptidylprolyl isomerase A (cyclophilin A)-like 4B ... PPIAL4A 0.724 peptidylprolyl isomerase A-like 4A PPIAL4C 0.724 peptidylprolyl isomerase A (cyclophilin A)-like 4C ... LOC390956 0.718 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC131055 0.718 PREDICTED: similar to TRIMCyp LOC390956 0.718 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC131055 0.718 PREDICTED: similar to TRIMCyp LOC390956 0.718 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC131055 0.718 PREDICTED: similar to TRIMCyp PPIAL4E 0.706 peptidylprolyl isomerase A (cyclophilin A)-like 4E ... LOC401859 0.703 PREDICTED: similar to TRIMCyp LOC401859 0.703 PREDICTED: similar to TRIMCyp LOC126170 0.679 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.679 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.679 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... PPIF 0.658 peptidylprolyl isomerase F precursor LOC392352 0.655 PREDICTED: similar to TRIMCyp LOC392352 0.655 PREDICTED: similar to TRIMCyp LOC392352 0.655 PREDICTED: similar to TRIMCyp Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.