Guide to the Human Genome
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Name: LOC650157 Sequence: fasta or formatted (234aa) NCBI GI: 169163623
Description:

PREDICTED: similar to TRIM5/CypA fusion protein

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt prot [272aa] PREDICTED: similar to TRIM5/CypA fusion protein
alt mRNA [234aa] PREDICTED: similar to TRIM5/CypA fusion protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.1         12           1
 C cysteine            2.1          5           1
 D aspartate           4.3         10           2
 E glutamate           5.1         12           2
 F phenylalanine       6.8         16           2
 G glycine            10.3         24           2
 H histidine           1.3          3           1
 I isoleucine          6.4         15           2
 K lysine              6.8         16           2
 L leucine             8.1         19           4
 M methionine          3.0          7           1
 N asparagine          3.8          9           2
 P proline             6.8         16           2
 Q glutamine           4.7         11           2
 R arginine            4.3         10           1
 S serine              7.7         18           1
 T threonine           6.0         14           1
 V valine              4.7         11           2
 W tryptophan          0.9          2           1
 X unknown             0.4          1           1
 Y tyrosine            1.3          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIM5/CypA fusion protein [Ho... 
LOC650157             1.000   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.923   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIA                  0.602   peptidylprolyl isomerase A 
LOC342541             0.549   PREDICTED: similar to TRIMCyp 
LOC342541             0.549   PREDICTED: similar to TRIMCyp 
LOC342541             0.549   PREDICTED: similar to TRIMCyp 
LOC643997             0.542   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.542   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.542   PREDICTED: similar to peptidylprolyl isomerase A iso...
PPIAL4G               0.538   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
PPIAL4B               0.538   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.538   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.538   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
LOC131055             0.527   PREDICTED: similar to TRIMCyp 
LOC131055             0.527   PREDICTED: similar to TRIMCyp 
LOC131055             0.527   PREDICTED: similar to TRIMCyp 
PPIAL4E               0.522   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC390956             0.520   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC390956             0.520   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC390956             0.520   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC401859             0.515   PREDICTED: similar to TRIMCyp 
LOC401859             0.515   PREDICTED: similar to TRIMCyp 
LOC126170             0.489   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.489   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.489   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIF                  0.478   peptidylprolyl isomerase F precursor 
LOC392352             0.465   PREDICTED: similar to TRIMCyp 
LOC392352             0.465   PREDICTED: similar to TRIMCyp 
LOC392352             0.465   PREDICTED: similar to TRIMCyp 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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