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Name: LOC643997 Sequence: fasta or formatted (136aa) NCBI GI: 239747928
Description:

PREDICTED: similar to TRIMCyp isoform 1

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt prot [165aa] PREDICTED: similar to TRIMCyp isoform 1
alt mRNA [136aa] PREDICTED: similar to peptidylprolyl isomerase A isoform 1
alt mRNA [136aa] PREDICTED: similar to TRIMCyp isoform 2
alt prot [165aa] PREDICTED: similar to peptidylprolyl isomerase A isoform 2
alt prot [165aa] PREDICTED: similar to TRIMCyp isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.7          5           1
 C cysteine            3.7          5           2
 D aspartate           3.7          5           1
 E glutamate           7.4         10           1
 F phenylalanine      10.3         14           2
 G glycine            13.2         18           2
 H histidine           5.1          7           2
 I isoleucine          6.6          9           2
 K lysine              9.6         13           2
 L leucine             3.7          5           1
 M methionine          2.9          4           1
 N asparagine          4.4          6           1
 P proline             2.9          4           1
 Q glutamine           0.7          1           1
 R arginine            2.2          3           1
 S serine              5.9          8           1
 T threonine           5.9          8           1
 V valine              5.9          8           2
 W tryptophan          0.7          1           1
 Y tyrosine            1.5          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             1.000   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             1.000   PREDICTED: similar to peptidylprolyl isomerase A is...
LOC643997             0.940   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.940   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.940   PREDICTED: similar to peptidylprolyl isomerase A iso...
PPIA                  0.790   peptidylprolyl isomerase A 
LOC100293160          0.727   PREDICTED: similar to TRIMCyp 
LOC131055             0.697   PREDICTED: similar to TRIMCyp 
LOC131055             0.697   PREDICTED: similar to TRIMCyp 
LOC131055             0.697   PREDICTED: similar to TRIMCyp 
LOC650157             0.697   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC342541             0.689   PREDICTED: similar to TRIMCyp 
LOC342541             0.689   PREDICTED: similar to TRIMCyp 
LOC342541             0.689   PREDICTED: similar to TRIMCyp 
LOC650157             0.689   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.689   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.685   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.685   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.685   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIAL4G               0.678   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
PPIAL4B               0.670   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.670   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.670   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
LOC390956             0.663   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC390956             0.663   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC390956             0.663   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
PPIAL4E               0.652   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC401859             0.652   PREDICTED: similar to TRIMCyp 
LOC401859             0.652   PREDICTED: similar to TRIMCyp 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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