Guide to the Human Genome
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Name: LOC390956 Sequence: fasta or formatted (186aa) NCBI GI: 239751853
Description:

PREDICTED: similar to TRIM5/cyclophilin A fusion protein

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt mRNA [186aa] PREDICTED: similar to TRIM5/cyclophilin A fusion protein
alt prot [210aa] PREDICTED: similar to TRIM5/CypA fusion protein
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4         10           1
 C cysteine            3.8          7           1
 D aspartate           5.4         10           2
 E glutamate           7.5         14           1
 F phenylalanine       8.1         15           2
 G glycine            12.4         23           2
 H histidine           3.8          7           1
 I isoleucine          4.8          9           2
 K lysine              8.1         15           1
 L leucine             6.5         12           1
 M methionine          2.7          5           1
 N asparagine          3.8          7           1
 P proline             4.3          8           1
 Q glutamine           2.2          4           1
 R arginine            2.7          5           1
 S serine              4.3          8           1
 T threonine           7.0         13           2
 V valine              4.8          9           2
 W tryptophan          0.0          0           0
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIM5/cyclophilin A fusion pr... 
LOC390956             1.000   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC390956             0.959   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIA                  0.729   peptidylprolyl isomerase A 
LOC131055             0.661   PREDICTED: similar to TRIMCyp 
LOC131055             0.661   PREDICTED: similar to TRIMCyp 
LOC131055             0.661   PREDICTED: similar to TRIMCyp 
LOC643997             0.659   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.659   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.659   PREDICTED: similar to peptidylprolyl isomerase A iso...
LOC342541             0.648   PREDICTED: similar to TRIMCyp 
LOC342541             0.648   PREDICTED: similar to TRIMCyp 
LOC342541             0.648   PREDICTED: similar to TRIMCyp 
LOC650157             0.645   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.637   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.637   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIAL4B               0.623   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.623   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.623   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
PPIAL4G               0.615   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
LOC401859             0.615   PREDICTED: similar to TRIMCyp 
LOC401859             0.615   PREDICTED: similar to TRIMCyp 
PPIAL4E               0.604   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC126170             0.591   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.591   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.591   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC256374             0.561   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC256374             0.561   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC256374             0.561   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC392352             0.556   PREDICTED: similar to TRIMCyp 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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