LOC390956 20992

Name: LOC390956	Sequence: fasta or formatted (186aa)		NCBI GI: 239751853
Description: PREDICTED: similar to TRIM5/cyclophilin A fusion protein		Referenced in: Peptidylprolyl Isomerases
Other entries for this name: alt mRNA [186aa] PREDICTED: similar to TRIM5/cyclophilin A fusion protein alt prot [210aa] PREDICTED: similar to TRIM5/CypA fusion protein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 10 1 C cysteine 3.8 7 1 D aspartate 5.4 10 2 E glutamate 7.5 14 1 F phenylalanine 8.1 15 2 G glycine 12.4 23 2 H histidine 3.8 7 1 I isoleucine 4.8 9 2 K lysine 8.1 15 1 L leucine 6.5 12 1 M methionine 2.7 5 1 N asparagine 3.8 7 1 P proline 4.3 8 1 Q glutamine 2.2 4 1 R arginine 2.7 5 1 S serine 4.3 8 1 T threonine 7.0 13 2 V valine 4.8 9 2 W tryptophan 0.0 0 0 Y tyrosine 2.7 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC390956 1.000 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC390956 0.959 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... PPIA 0.729 peptidylprolyl isomerase A LOC131055 0.661 PREDICTED: similar to TRIMCyp LOC131055 0.661 PREDICTED: similar to TRIMCyp LOC131055 0.661 PREDICTED: similar to TRIMCyp LOC643997 0.659 PREDICTED: similar to TRIMCyp isoform 1 LOC643997 0.659 PREDICTED: similar to TRIMCyp isoform 2 LOC643997 0.659 PREDICTED: similar to peptidylprolyl isomerase A iso... LOC342541 0.648 PREDICTED: similar to TRIMCyp LOC342541 0.648 PREDICTED: similar to TRIMCyp LOC342541 0.648 PREDICTED: similar to TRIMCyp LOC650157 0.645 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC650157 0.637 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC650157 0.637 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... PPIAL4B 0.623 peptidylprolyl isomerase A (cyclophilin A)-like 4B ... PPIAL4A 0.623 peptidylprolyl isomerase A-like 4A PPIAL4C 0.623 peptidylprolyl isomerase A (cyclophilin A)-like 4C ... PPIAL4G 0.615 peptidylprolyl isomerase A (cyclophilin A)-like 4G ... LOC401859 0.615 PREDICTED: similar to TRIMCyp LOC401859 0.615 PREDICTED: similar to TRIMCyp PPIAL4E 0.604 peptidylprolyl isomerase A (cyclophilin A)-like 4E ... LOC126170 0.591 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.591 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.591 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC256374 0.561 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC256374 0.561 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC256374 0.561 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC392352 0.556 PREDICTED: similar to TRIMCyp Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.