LOC390956 8941

Name: LOC390956	Sequence: fasta or formatted (210aa)		NCBI GI: 169214050
Description: PREDICTED: similar to TRIM5/CypA fusion protein		Referenced in: Peptidylprolyl Isomerases
Other entries for this name: alt prot [186aa] PREDICTED: similar to TRIM5/cyclophilin A fusion protein alt prot [186aa] PREDICTED: similar to TRIM5/cyclophilin A fusion protein
Composition: Amino acid Percentage Count Longest homopolymer A alanine 7.1 15 3 C cysteine 3.8 8 1 D aspartate 5.7 12 2 E glutamate 7.1 15 1 F phenylalanine 8.1 17 2 G glycine 11.4 24 2 H histidine 3.3 7 1 I isoleucine 4.8 10 2 K lysine 7.1 15 1 L leucine 6.2 13 1 M methionine 2.4 5 1 N asparagine 3.3 7 1 P proline 4.3 9 1 Q glutamine 1.9 4 1 R arginine 3.3 7 1 S serine 5.7 12 1 T threonine 6.2 13 1 V valine 4.8 10 2 W tryptophan 0.5 1 1 Y tyrosine 2.9 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC390956 0.847 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC390956 0.847 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... PPIA 0.644 peptidylprolyl isomerase A LOC131055 0.584 PREDICTED: similar to TRIMCyp LOC131055 0.584 PREDICTED: similar to TRIMCyp LOC131055 0.584 PREDICTED: similar to TRIMCyp LOC643997 0.581 PREDICTED: similar to TRIMCyp isoform 1 LOC643997 0.581 PREDICTED: similar to TRIMCyp isoform 2 LOC643997 0.581 PREDICTED: similar to peptidylprolyl isomerase A iso... LOC342541 0.572 PREDICTED: similar to TRIMCyp LOC342541 0.572 PREDICTED: similar to TRIMCyp LOC342541 0.572 PREDICTED: similar to TRIMCyp LOC650157 0.569 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC650157 0.562 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC650157 0.562 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... PPIAL4B 0.550 peptidylprolyl isomerase A (cyclophilin A)-like 4B ... PPIAL4A 0.550 peptidylprolyl isomerase A-like 4A PPIAL4C 0.550 peptidylprolyl isomerase A (cyclophilin A)-like 4C ... PPIAL4G 0.543 peptidylprolyl isomerase A (cyclophilin A)-like 4G ... LOC401859 0.543 PREDICTED: similar to TRIMCyp LOC401859 0.543 PREDICTED: similar to TRIMCyp PPIAL4E 0.533 peptidylprolyl isomerase A (cyclophilin A)-like 4E ... LOC126170 0.522 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.522 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.522 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC256374 0.495 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC256374 0.495 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC256374 0.495 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... PPIF 0.493 peptidylprolyl isomerase F precursor Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.