Guide to the Human Genome
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Name: LOC643997 Sequence: fasta or formatted (165aa) NCBI GI: 88958081
Description:

PREDICTED: similar to TRIMCyp isoform 2

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt mRNA [165aa] PREDICTED: similar to TRIMCyp isoform 1
alt prot [136aa] PREDICTED: similar to peptidylprolyl isomerase A isoform 1
alt prot [136aa] PREDICTED: similar to TRIMCyp isoform 1
alt prot [136aa] PREDICTED: similar to TRIMCyp isoform 2
alt mRNA [165aa] PREDICTED: similar to peptidylprolyl isomerase A isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.2          7           1
 C cysteine            3.0          5           2
 D aspartate           4.8          8           3
 E glutamate           6.1         10           1
 F phenylalanine       9.1         15           2
 G glycine            13.3         22           2
 H histidine           4.8          8           2
 I isoleucine          6.7         11           2
 K lysine              8.5         14           2
 L leucine             4.2          7           1
 M methionine          3.0          5           1
 N asparagine          6.1         10           1
 P proline             3.6          6           1
 Q glutamine           1.2          2           1
 R arginine            1.8          3           1
 S serine              6.1         10           1
 T threonine           6.1         10           1
 V valine              5.5          9           2
 W tryptophan          0.6          1           1
 Y tyrosine            1.2          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             1.000   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             1.000   PREDICTED: similar to peptidylprolyl isomerase A iso...
PPIA                  0.859   peptidylprolyl isomerase A 
LOC342541             0.774   PREDICTED: similar to TRIMCyp 
LOC342541             0.774   PREDICTED: similar to TRIMCyp 
LOC342541             0.774   PREDICTED: similar to TRIMCyp 
LOC643997             0.768   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.768   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.768   PREDICTED: similar to peptidylprolyl isomerase A is...
LOC650157             0.755   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC131055             0.752   PREDICTED: similar to TRIMCyp 
LOC131055             0.752   PREDICTED: similar to TRIMCyp 
LOC131055             0.752   PREDICTED: similar to TRIMCyp 
PPIAL4G               0.749   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
LOC650157             0.749   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.749   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.749   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.749   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.749   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIAL4B               0.743   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.743   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.743   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
LOC390956             0.743   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC390956             0.743   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC390956             0.743   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC401859             0.734   PREDICTED: similar to TRIMCyp 
LOC401859             0.734   PREDICTED: similar to TRIMCyp 
PPIAL4E               0.728   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
PPIF                  0.661   peptidylprolyl isomerase F precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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