Guide to the Human Genome
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Name: LOC342541 Sequence: fasta or formatted (168aa) NCBI GI: 29737770
Description:

PREDICTED: similar to TRIMCyp

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt mRNA [168aa] PREDICTED: similar to TRIMCyp
alt mRNA [168aa] PREDICTED: similar to TRIMCyp
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         10           1
 C cysteine            3.0          5           1
 D aspartate           4.2          7           2
 E glutamate           4.2          7           1
 F phenylalanine       8.9         15           2
 G glycine            12.5         21           2
 H histidine           4.2          7           2
 I isoleucine          6.0         10           2
 K lysine              8.9         15           2
 L leucine             4.2          7           1
 M methionine          3.6          6           1
 N asparagine          6.0         10           1
 P proline             4.8          8           1
 Q glutamine           2.4          4           1
 R arginine            1.8          3           1
 S serine              6.5         11           2
 T threonine           7.1         12           1
 V valine              3.6          6           2
 W tryptophan          0.6          1           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIMCyp 
LOC342541             1.000   PREDICTED: similar to TRIMCyp 
LOC342541             1.000   PREDICTED: similar to TRIMCyp 
PPIA                  0.817   peptidylprolyl isomerase A 
LOC643997             0.760   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.760   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.760   PREDICTED: similar to peptidylprolyl isomerase A iso...
LOC650157             0.754   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.745   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.745   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIAL4G               0.730   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
PPIAL4B               0.724   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.724   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.724   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
LOC390956             0.718   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC131055             0.718   PREDICTED: similar to TRIMCyp 
LOC390956             0.718   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC131055             0.718   PREDICTED: similar to TRIMCyp 
LOC390956             0.718   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC131055             0.718   PREDICTED: similar to TRIMCyp 
PPIAL4E               0.706   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC401859             0.703   PREDICTED: similar to TRIMCyp 
LOC401859             0.703   PREDICTED: similar to TRIMCyp 
LOC126170             0.679   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.679   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.679   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
PPIF                  0.658   peptidylprolyl isomerase F precursor 
LOC392352             0.655   PREDICTED: similar to TRIMCyp 
LOC392352             0.655   PREDICTED: similar to TRIMCyp 
LOC392352             0.655   PREDICTED: similar to TRIMCyp 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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