Guide to the Human Genome
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Name: LOC401859 Sequence: fasta or formatted (166aa) NCBI GI: 239751117
Description:

PREDICTED: similar to TRIMCyp

Referenced in:

Peptidylprolyl Isomerases

Other entries for this name:
alt prot [163aa] PREDICTED: similar to TRIMCyp
alt mRNA [166aa] PREDICTED: similar to TRIMCyp
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.4          9           1
 C cysteine            3.6          6           1
 D aspartate           3.0          5           2
 E glutamate           4.8          8           1
 F phenylalanine       7.8         13           2
 G glycine            12.7         21           3
 H histidine           4.2          7           1
 I isoleucine          6.0         10           2
 K lysine              8.4         14           1
 L leucine             4.8          8           1
 M methionine          4.2          7           1
 N asparagine          5.4          9           1
 P proline             3.6          6           1
 Q glutamine           1.8          3           1
 R arginine            1.8          3           1
 S serine              7.2         12           2
 T threonine           7.8         13           2
 V valine              4.8          8           2
 W tryptophan          0.0          0           0
 X unknown             0.6          1           1
 Y tyrosine            1.8          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to TRIMCyp 
LOC401859             1.000   PREDICTED: similar to TRIMCyp 
LOC401859             0.872   PREDICTED: similar to TRIMCyp 
PPIA                  0.794   peptidylprolyl isomerase A 
LOC643997             0.748   PREDICTED: similar to TRIMCyp isoform 1 
LOC643997             0.748   PREDICTED: similar to TRIMCyp isoform 2 
LOC643997             0.748   PREDICTED: similar to peptidylprolyl isomerase A iso...
LOC650157             0.732   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC342541             0.729   PREDICTED: similar to TRIMCyp 
LOC342541             0.729   PREDICTED: similar to TRIMCyp 
LOC342541             0.729   PREDICTED: similar to TRIMCyp 
LOC650157             0.726   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC650157             0.726   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC390956             0.707   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC390956             0.707   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC390956             0.707   PREDICTED: similar to TRIM5/cyclophilin A fusion pr...
LOC131055             0.688   PREDICTED: similar to TRIMCyp 
LOC131055             0.688   PREDICTED: similar to TRIMCyp 
LOC131055             0.688   PREDICTED: similar to TRIMCyp 
PPIAL4B               0.682   peptidylprolyl isomerase A (cyclophilin A)-like 4B ...
PPIAL4A               0.682   peptidylprolyl isomerase A-like 4A 
PPIAL4C               0.682   peptidylprolyl isomerase A (cyclophilin A)-like 4C ...
PPIAL4G               0.679   peptidylprolyl isomerase A (cyclophilin A)-like 4G ...
PPIAL4E               0.673   peptidylprolyl isomerase A (cyclophilin A)-like 4E ...
LOC126170             0.623   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.623   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC126170             0.623   PREDICTED: similar to TRIM5/CypA fusion protein [Ho...
LOC392352             0.598   PREDICTED: similar to TRIMCyp 
LOC392352             0.598   PREDICTED: similar to TRIMCyp 
LOC392352             0.598   PREDICTED: similar to TRIMCyp 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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