LOC401859 20680

Name: LOC401859	Sequence: fasta or formatted (166aa)		NCBI GI: 239751117
Description: PREDICTED: similar to TRIMCyp		Referenced in: Peptidylprolyl Isomerases
Other entries for this name: alt prot [163aa] PREDICTED: similar to TRIMCyp alt mRNA [166aa] PREDICTED: similar to TRIMCyp
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.4 9 1 C cysteine 3.6 6 1 D aspartate 3.0 5 2 E glutamate 4.8 8 1 F phenylalanine 7.8 13 2 G glycine 12.7 21 3 H histidine 4.2 7 1 I isoleucine 6.0 10 2 K lysine 8.4 14 1 L leucine 4.8 8 1 M methionine 4.2 7 1 N asparagine 5.4 9 1 P proline 3.6 6 1 Q glutamine 1.8 3 1 R arginine 1.8 3 1 S serine 7.2 12 2 T threonine 7.8 13 2 V valine 4.8 8 2 W tryptophan 0.0 0 0 X unknown 0.6 1 1 Y tyrosine 1.8 3 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PREDICTED: similar to TRIMCyp LOC401859 1.000 PREDICTED: similar to TRIMCyp LOC401859 0.872 PREDICTED: similar to TRIMCyp PPIA 0.794 peptidylprolyl isomerase A LOC643997 0.748 PREDICTED: similar to TRIMCyp isoform 1 LOC643997 0.748 PREDICTED: similar to TRIMCyp isoform 2 LOC643997 0.748 PREDICTED: similar to peptidylprolyl isomerase A iso... LOC650157 0.732 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC342541 0.729 PREDICTED: similar to TRIMCyp LOC342541 0.729 PREDICTED: similar to TRIMCyp LOC342541 0.729 PREDICTED: similar to TRIMCyp LOC650157 0.726 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC650157 0.726 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC390956 0.707 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC390956 0.707 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC390956 0.707 PREDICTED: similar to TRIM5/cyclophilin A fusion pr... LOC131055 0.688 PREDICTED: similar to TRIMCyp LOC131055 0.688 PREDICTED: similar to TRIMCyp LOC131055 0.688 PREDICTED: similar to TRIMCyp PPIAL4B 0.682 peptidylprolyl isomerase A (cyclophilin A)-like 4B ... PPIAL4A 0.682 peptidylprolyl isomerase A-like 4A PPIAL4C 0.682 peptidylprolyl isomerase A (cyclophilin A)-like 4C ... PPIAL4G 0.679 peptidylprolyl isomerase A (cyclophilin A)-like 4G ... PPIAL4E 0.673 peptidylprolyl isomerase A (cyclophilin A)-like 4E ... LOC126170 0.623 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.623 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC126170 0.623 PREDICTED: similar to TRIM5/CypA fusion protein [Ho... LOC392352 0.598 PREDICTED: similar to TRIMCyp LOC392352 0.598 PREDICTED: similar to TRIMCyp LOC392352 0.598 PREDICTED: similar to TRIMCyp Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.