Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100294038 Sequence: fasta or formatted (284aa) NCBI GI: 239755300
Description:

PREDICTED: similar to centaurin, gamma-like family, member 1

Referenced in:

ADP-Ribosylation Factors

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         21           1
 C cysteine            3.5         10           1
 D aspartate           6.0         17           2
 E glutamate           8.1         23           2
 F phenylalanine       2.1          6           1
 G glycine             4.6         13           1
 H histidine           1.4          4           1
 I isoleucine          3.5         10           1
 K lysine              3.9         11           1
 L leucine            11.6         33           3
 M methionine          2.1          6           1
 N asparagine          4.9         14           2
 P proline             3.2          9           1
 Q glutamine           4.9         14           2
 R arginine            5.6         16           1
 S serine             10.6         30           2
 T threonine           5.6         16           1
 V valine              5.6         16           2
 W tryptophan          2.5          7           2
 Y tyrosine            2.8          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to centaurin, gamma-like family,... 
AGAP4                 0.589   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP7                 0.587   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP8                 0.585   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP5                 0.583   ArfGAP with GTPase domain, ankyrin repeat and PH do...
AGAP6                 0.580   centaurin, gamma-like family, member 3 
AGAP11                0.574   ankyrin repeat and GTPase domain Arf GTPase activat...
AGAP9                 0.547   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP10                0.547   PREDICTED: ArfGAP with GTPase domain, ankyrin repea...
AGAP1                 0.522   centaurin, gamma 2 isoform 2 
AGAP1                 0.522   centaurin, gamma 2 isoform 1 
AGAP3                 0.384   centaurin, gamma 3 isoform a 
AGAP2                 0.297   centaurin, gamma 1 isoform PIKE-L 
AGAP2                 0.297   centaurin, gamma 1 isoform PIKE-S 
GIT2                  0.100   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.100   G protein-coupled receptor kinase interacting ArfGA...
GIT2                  0.100   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.100   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.100   G protein-coupled receptor kinase interacting ArfGAP...
GIT2                  0.100   G protein-coupled receptor kinase interacting ArfGA...
GIT1                  0.098   G protein-coupled receptor kinase interactor 1 isof...
GIT1                  0.098   G protein-coupled receptor kinase interactor 1 isofo...
ACAP3                 0.078   ArfGAP with coiled-coil, ankyrin repeat and PH doma...
ACAP1                 0.076   centaurin beta1 
RAI14                 0.071   retinoic acid induced 14 isoform d 
RAI14                 0.071   retinoic acid induced 14 isoform c 
RAI14                 0.071   retinoic acid induced 14 isoform b 
RAI14                 0.071   retinoic acid induced 14 isoform a 
RAI14                 0.071   retinoic acid induced 14 isoform a 
RAI14                 0.071   retinoic acid induced 14 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press