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Search of human proteins with 239755267
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755267 PREDICTED: hypothetical protein [Homo sapiens]
(94 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755267 PREDICTED: hypothetical protein [Homo sapiens] 195 6e-51
gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo ... 35 0.013
gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo ... 35 0.013
gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo ... 35 0.013
gi|239508962 PREDICTED: hypothetical protein [Homo sapiens] 35 0.013
gi|154146231 DMRT-like family A2 [Homo sapiens] 35 0.013
gi|160333411 early B-cell factor 4 [Homo sapiens] 34 0.022
gi|39812378 RAN binding protein 9 [Homo sapiens] 33 0.064
gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo ... 32 0.084
gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo ... 32 0.084
gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithora... 32 0.11
gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens] 32 0.11
gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo sap... 32 0.14
gi|119120918 coiled-coil domain containing 64 [Homo sapiens] 31 0.19
gi|239756342 PREDICTED: hypothetical protein XP_002344885 [Homo ... 31 0.24
gi|239750821 PREDICTED: hypothetical protein [Homo sapiens] 31 0.24
gi|239745183 PREDICTED: hypothetical protein XP_002343384 [Homo ... 31 0.24
gi|18959212 GS homeobox 2 [Homo sapiens] 31 0.24
gi|38348332 killer cell lectin-like receptor subfamily G, member... 31 0.24
gi|18201913 forkhead box N1 [Homo sapiens] 31 0.24
gi|7706469 Kruppel-like factor [Homo sapiens] 30 0.32
gi|239756566 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 30 0.42
gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens] 30 0.42
gi|20143482 melanoma antigen family E, 1 [Homo sapiens] 30 0.54
gi|122937321 UNC homeobox [Homo sapiens] 30 0.54
gi|62422577 neurobeachin [Homo sapiens] 29 0.71
gi|51468067 Sp5 transcription factor [Homo sapiens] 29 0.71
gi|21389357 MAPK-interacting and spindle-stabilizing protein [Ho... 29 0.71
>gi|239755267 PREDICTED: hypothetical protein [Homo sapiens]
Length = 94
Score = 195 bits (496), Expect = 6e-51
Identities = 94/94 (100%), Positives = 94/94 (100%)
Query: 1 MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG
Sbjct: 1 MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
Query: 61 LGGSARLRFFLLPANICCLAGNPTISRALCLQSL 94
LGGSARLRFFLLPANICCLAGNPTISRALCLQSL
Sbjct: 61 LGGSARLRFFLLPANICCLAGNPTISRALCLQSL 94
>gi|239754657 PREDICTED: hypothetical protein XP_002346062 [Homo
sapiens]
Length = 384
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 9 RPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
RP++PGPR A PAP P + A G A +G PG RG+G
Sbjct: 120 RPAAPGPRP-----GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
>gi|239749199 PREDICTED: hypothetical protein XP_002346952 [Homo
sapiens]
Length = 209
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 9 RPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
RP++PGPR A PAP P + A G A +G PG RG+G
Sbjct: 120 RPAAPGPRP-----GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
>gi|239743279 PREDICTED: hypothetical protein XP_002342816 [Homo
sapiens]
Length = 384
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 9 RPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
RP++PGPR A PAP P + A G A +G PG RG+G
Sbjct: 120 RPAAPGPRP-----GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
>gi|239508962 PREDICTED: hypothetical protein [Homo sapiens]
Length = 384
Score = 35.0 bits (79), Expect = 0.013
Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 5/52 (9%)
Query: 9 RPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
RP++PGPR A PAP P + A G A +G PG RG+G
Sbjct: 120 RPAAPGPRP-----GCSSARASPAPAAPQAAARTAPGRAASGGSGPGSRGQG 166
>gi|154146231 DMRT-like family A2 [Homo sapiens]
Length = 542
Score = 35.0 bits (79), Expect = 0.013
Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 30 PPAPQNPGFFSVCAAGTAQAGAGAPGLRGEGLGGS----ARLRFFLLPANICCLAGNP 83
PP P F SVCAA GAGAP G G G+ A+L+ F L AG P
Sbjct: 149 PPRPAYEVFGSVCAADGGGPGAGAPAGTGGGAAGAGGSEAKLQKFDLFPKTLLQAGRP 206
>gi|160333411 early B-cell factor 4 [Homo sapiens]
Length = 598
Score = 34.3 bits (77), Expect = 0.022
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 6 SSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEGLGG 63
S P P+ G A LA V P P+ PG+ C++ + + A +PG + G GG
Sbjct: 417 SHPHPAVVGINAFSSPLAIAVGDATPGPE-PGYARSCSSASPRGFAPSPGSQQSGYGG 473
>gi|39812378 RAN binding protein 9 [Homo sapiens]
Length = 729
Score = 32.7 bits (73), Expect = 0.064
Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
Query: 12 SPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEGLGGSA 65
SP P A L ++ V P PPA +AG++ AG+ G GEGLG +A
Sbjct: 20 SPPPPAALAPVSGVVLPAPPA---------VSAGSSPAGSPGGGAGGEGLGAAA 64
>gi|239749695 PREDICTED: hypothetical protein XP_002347121 [Homo
sapiens]
Length = 594
Score = 32.3 bits (72), Expect = 0.084
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
+G+ +P + PGPR L+ G P PP P P A +A+ PG
Sbjct: 525 VGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPP-PARALPAAVASARCSLRDPG----- 578
Query: 61 LGGSARLR 68
GGSAR+R
Sbjct: 579 -GGSARIR 585
>gi|239743961 PREDICTED: hypothetical protein XP_002344246 [Homo
sapiens]
Length = 594
Score = 32.3 bits (72), Expect = 0.084
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 7/68 (10%)
Query: 1 MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
+G+ +P + PGPR L+ G P PP P P A +A+ PG
Sbjct: 525 VGKGPGAPPSALPGPRPRPDSLSPGEPPGPPTPP-PARALPAAVASARCSLRDPG----- 578
Query: 61 LGGSARLR 68
GGSAR+R
Sbjct: 579 -GGSARIR 585
>gi|57222568 myeloid/lymphoid or mixed-lineage leukemia (trithorax
homolog, Drosophila); translocated to, 6 [Homo sapiens]
Length = 1093
Score = 32.0 bits (71), Expect = 0.11
Identities = 35/105 (33%), Positives = 44/105 (41%), Gaps = 25/105 (23%)
Query: 11 SSPGPRAVLQ--------FLAFGVAPRPPAPQN-----PGFFSVCAAGTAQ------AGA 51
S+P P +LQ L AP PP PQN PG + A A+ AG+
Sbjct: 832 STPPPLPLLQQSPATLPLALPGAPAPLPPQPQNGLGRAPGAAGLGAMPMAEGLLGGLAGS 891
Query: 52 GAPGLRG--EGLGGSARLRFFLLPANICCLAGNPTISRALCLQSL 94
G L G GL G+A PA++ G PT+ CL SL
Sbjct: 892 GGLPLNGLLGGLNGAAAPN----PASLSQAGGAPTLQLPGCLNSL 932
>gi|5902724 neuro-oncological ventral antigen 2 [Homo sapiens]
Length = 492
Score = 32.0 bits (71), Expect = 0.11
Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 23 AFGVAPRPPAPQNP-GFFSVCAAGTAQAGAGAPGLRGEGLG 62
A G AP PP P G F++ AA GAGA G G G G
Sbjct: 339 AGGAAPPPPPPPGALGSFALAAAANGYLGAGAGGGAGGGGG 379
>gi|154759423 Cdk5 and Abl enzyme substrate 1 isoform 2 [Homo
sapiens]
Length = 633
Score = 31.6 bits (70), Expect = 0.14
Identities = 23/70 (32%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 2 GRDFSSPRPSSPGPRAVLQFL-AFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
G + PRP+ A LQ L G A + ++ F SV A G+G P G G
Sbjct: 177 GEQWQPPRPAPLAACAQLQLLDGSGAAGQEELEEDDAFISVQVPAAAFLGSGTP---GSG 233
Query: 61 LGGSARLRFF 70
G RL F
Sbjct: 234 SGSRGRLNSF 243
>gi|119120918 coiled-coil domain containing 64 [Homo sapiens]
Length = 573
Score = 31.2 bits (69), Expect = 0.19
Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 9 RPSSPG--PRAVLQFLAFGVAPRPPAPQNPGFFSV 41
RPS PG P+A LA G P+PP Q+P SV
Sbjct: 68 RPSDPGEHPQAEPGSLAEGAGPQPPPSQDPELLSV 102
>gi|239756342 PREDICTED: hypothetical protein XP_002344885 [Homo
sapiens]
Length = 277
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 25 GVAPRPPAPQNPGFFSVC----AAGTAQAGAGAPGLRGEGLGGSARLR 68
G +P+ PA ++PG C A G A+ G G G G GG A R
Sbjct: 212 GASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGAASR 259
>gi|239750821 PREDICTED: hypothetical protein [Homo sapiens]
Length = 277
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 25 GVAPRPPAPQNPGFFSVC----AAGTAQAGAGAPGLRGEGLGGSARLR 68
G +P+ PA ++PG C A G A+ G G G G GG A R
Sbjct: 212 GASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGAASR 259
>gi|239745183 PREDICTED: hypothetical protein XP_002343384 [Homo
sapiens]
Length = 277
Score = 30.8 bits (68), Expect = 0.24
Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Query: 25 GVAPRPPAPQNPGFFSVC----AAGTAQAGAGAPGLRGEGLGGSARLR 68
G +P+ PA ++PG C A G A+ G G G G GG A R
Sbjct: 212 GASPQTPAGRSPGLGWSCPADTAPGPAEGGGGLTGRLRAGEGGGAASR 259
>gi|18959212 GS homeobox 2 [Homo sapiens]
Length = 304
Score = 30.8 bits (68), Expect = 0.24
Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 24/87 (27%)
Query: 3 RDFSSPRPSSPGPRAVLQF-LAFGVAPR-------PPAP-QNPGFFSVC----------- 42
+D S P PS P P F + G+ P P P + G F VC
Sbjct: 13 KDTSRPAPSLPEPHPGPDFFIPLGMPPPLVMSVSGPGCPSRKSGAFCVCPLCVTSHLHSS 72
Query: 43 ----AAGTAQAGAGAPGLRGEGLGGSA 65
AG+ AGAG G G G+ G+A
Sbjct: 73 RGSVGAGSGGAGAGVTGAGGSGVAGAA 99
>gi|38348332 killer cell lectin-like receptor subfamily G, member 2
[Homo sapiens]
Length = 409
Score = 30.8 bits (68), Expect = 0.24
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 7 SPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAP 54
SPRP SP R L +GV P PP+P P + G A AP
Sbjct: 72 SPRPGSP--RVPPLSLGYGVCPEPPSP-GPALVKLPRNGEAPGAEPAP 116
>gi|18201913 forkhead box N1 [Homo sapiens]
Length = 648
Score = 30.8 bits (68), Expect = 0.24
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 10/53 (18%)
Query: 7 SPRPSSPGPRAVLQFLAFGVAPRP----PAPQNPGFFSVCAAGTAQAGAGAPG 55
SPR +SPGP V G P P P+ + PGF G +A A +PG
Sbjct: 67 SPRIASPGPEQVQGHCPAGPGPGPFRLSPSDKYPGF------GFEEAAASSPG 113
>gi|7706469 Kruppel-like factor [Homo sapiens]
Length = 355
Score = 30.4 bits (67), Expect = 0.32
Identities = 19/54 (35%), Positives = 21/54 (38%), Gaps = 9/54 (16%)
Query: 5 FSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRG 58
F P +PGP G+ PPAP G F AA A G P RG
Sbjct: 197 FGGPGFGAPGP---------GLHYAPPAPPAFGLFDDAAAAAAALGLAPPAARG 241
>gi|239756566 PREDICTED: hypothetical protein [Homo sapiens]
Length = 214
Score = 30.0 bits (66), Expect = 0.42
Identities = 21/47 (44%), Positives = 23/47 (48%), Gaps = 6/47 (12%)
Query: 28 PRPPAPQN---PGFF-SVCAAGTAQAGAGAPGLRGEGL--GGSARLR 68
PRP P+ PG S A G +GA GL GEG GG A LR
Sbjct: 145 PRPRVPRGQPLPGLHPSAAAPGVGGRASGAGGLLGEGAAGGGGAHLR 191
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 1 MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAG--------AG 52
+GR +PRPS P P Q + GV P AP+ V A AG +G
Sbjct: 267 LGRSLVTPRPSPP-PPLTPQAESGGVDAAPRAPETRQVRKVDGVNPAAAGPRGGATACSG 325
Query: 53 APGLRGEGLGGSARLRFFLLPA 74
R +GL LR LLPA
Sbjct: 326 VQSRRPQGLA----LRATLLPA 343
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
Query: 1 MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAG--------AG 52
+GR +PRPS P P Q + GV P AP+ V A AG +G
Sbjct: 267 LGRSLVTPRPSPP-PPLTPQAESGGVDAAPRAPETRQVRKVDGVNPAAAGPRGGATACSG 325
Query: 53 APGLRGEGLGGSARLRFFLLPA 74
R +GL LR LLPA
Sbjct: 326 VQSRRPQGLA----LRATLLPA 343
>gi|170016069 zinc finger, CCHC domain containing 2 [Homo sapiens]
Length = 1178
Score = 30.0 bits (66), Expect = 0.42
Identities = 28/68 (41%), Positives = 29/68 (42%), Gaps = 15/68 (22%)
Query: 3 RDFSSPRPSSP--GPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEG 60
RD P P P GP G P PP P+ G AG A AGAG P G G
Sbjct: 39 RDCRPPPPPPPPAGPSR-------GPLPPPPPPRGLG---PPVAGGAAAGAGMP---GGG 85
Query: 61 LGGSARLR 68
G SA LR
Sbjct: 86 GGPSAALR 93
>gi|20143482 melanoma antigen family E, 1 [Homo sapiens]
Length = 957
Score = 29.6 bits (65), Expect = 0.54
Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 9/85 (10%)
Query: 10 PSSPGPRAVLQFLAFGVAPR----PPAPQNPGFFSVCAAGTAQAGAGAPGLRGEGLGGSA 65
P P +LQ L P P + + P F A + +G P + EG G S
Sbjct: 46 PQGPSDSQILQGLCASEGPSTSVLPTSAEGPSTFVPPTISEASSASGQPTI-SEGPGTSV 104
Query: 66 RLRFFLLPANICCLAGNPTISRALC 90
P+ +G PTIS+ LC
Sbjct: 105 ----LPTPSEGLSTSGPPTISKGLC 125
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 29.6 bits (65), Expect = 0.54
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 28 PRPPAPQNPGFFSVCAAGTAQAGAGAPGLRG 58
P PPA + PG + AAGTA A G P G
Sbjct: 249 PPPPAAKGPGAHASGAAGTAPAPPGEPPAPG 279
>gi|62422577 neurobeachin [Homo sapiens]
Length = 2946
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 7/56 (12%)
Query: 33 PQNPGFFSVCAAGTAQAGAGAPGLRGEGLG---GSARLRFFLLPANICCLAGNPTI 85
PQ G +V AAG G+G G G G+G G++ +LPA + NP++
Sbjct: 14 PQPVGLIAVGAAGGGGGGSGGGGTGGSGMGELRGASGSGSVMLPAGMI----NPSV 65
>gi|51468067 Sp5 transcription factor [Homo sapiens]
Length = 398
Score = 29.3 bits (64), Expect = 0.71
Identities = 21/57 (36%), Positives = 29/57 (50%), Gaps = 9/57 (15%)
Query: 8 PRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAPGLRGEGLGGS 64
P P P P Q ++P P AP + ++S+ AG AG GA G+ G GL G+
Sbjct: 165 PPPPPPPPPTCRQ-----LSPNP-APDDLPWWSIPQAG---AGPGASGVPGSGLSGA 212
>gi|21389357 MAPK-interacting and spindle-stabilizing protein [Homo
sapiens]
Length = 245
Score = 29.3 bits (64), Expect = 0.71
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 9/54 (16%)
Query: 1 MGRDFSSPRPSSPGPRAVLQFLAFGVAPRPPAPQNPGFFSVCAAGTAQAGAGAP 54
MG + +P P P G P PP PQ PG GT GA P
Sbjct: 157 MGGQYPTPNMPYPSP---------GPYPAPPPPQAPGAAPPVPWGTVPPGAWGP 201
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,209,803
Number of Sequences: 37866
Number of extensions: 310448
Number of successful extensions: 1755
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 104
Number of HSP's that attempted gapping in prelim test: 1625
Number of HSP's gapped (non-prelim): 231
length of query: 94
length of database: 18,247,518
effective HSP length: 65
effective length of query: 29
effective length of database: 15,786,228
effective search space: 457800612
effective search space used: 457800612
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.