Guide to the Human Genome
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Name: LOC100292126 Sequence: fasta or formatted (277aa) NCBI GI: 239756342
Description:

PREDICTED: hypothetical protein XP_002344885

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.5         29           2
 C cysteine            2.2          6           2
 D aspartate           4.0         11           3
 E glutamate           5.1         14           2
 F phenylalanine       2.5          7           1
 G glycine            11.2         31           4
 H histidine           4.3         12           2
 I isoleucine          2.2          6           1
 K lysine              2.2          6           1
 L leucine            13.0         36           3
 M methionine          0.4          1           1
 N asparagine          1.4          4           1
 P proline             8.7         24           2
 Q glutamine           6.9         19           3
 R arginine            5.1         14           2
 S serine              9.0         25           3
 T threonine           3.6         10           1
 V valine              6.5         18           2
 W tryptophan          0.7          2           1
 Y tyrosine            0.7          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002344885 
LOC100289332          1.000   PREDICTED: hypothetical protein 
LOC100289332          1.000   PREDICTED: hypothetical protein XP_002343384 
LOC100293776          0.022   PREDICTED: hypothetical protein 
LOC100288658          0.022   PREDICTED: hypothetical protein XP_002342750 
LOC100288658          0.022   PREDICTED: hypothetical protein 
LOC100292397          0.020   PREDICTED: hypothetical protein 
LOC100128074          0.020   PREDICTED: hypothetical protein 
MN1                   0.020   meningioma  1 
LOC100128074          0.019   PREDICTED: hypothetical protein 
MAF                   0.019   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.019   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
POU4F1                0.019   POU domain, class 4, transcription factor 1 
FLJ10357              0.019   hypothetical protein LOC55701 
LOC100128074          0.017   PREDICTED: hypothetical protein 
CPEB4                 0.017   cytoplasmic polyadenylation element binding protein...
FOXL2                 0.017   forkhead box L2 
LOC100293375          0.017   PREDICTED: hypothetical protein 
CHD5                  0.017   chromodomain helicase DNA binding protein 5 
PHF1                  0.015   PHD finger protein 1 isoform a 
CASZ1                 0.015   castor homolog 1, zinc finger isoform a 
HNRNPU                0.015   heterogeneous nuclear ribonucleoprotein U isoform a ...
FZD8                  0.015   frizzled 8 
POU3F1                0.015   POU domain, class 3, transcription factor 1 
LOC100129654          0.015   PREDICTED: similar to transcription factor 23 [Homo...
LOC100129654          0.015   PREDICTED: similar to transcription factor 23 [Homo...
RAVER1                0.015   RAVER1 
POU4F2                0.015   Brn3b POU domain transcription factor 
SPAG1                 0.015   sperm associated antigen 1 
SPAG1                 0.015   sperm associated antigen 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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