Guide to the Human Genome
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Name: LOC100134117 Sequence: fasta or formatted (94aa) NCBI GI: 239755267
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            14.9         14           2
 C cysteine            4.3          4           2
 D aspartate           1.1          1           1
 E glutamate           1.1          1           1
 F phenylalanine       7.4          7           2
 G glycine            13.8         13           2
 H histidine           0.0          0           0
 I isoleucine          2.1          2           1
 K lysine              0.0          0           0
 L leucine            11.7         11           2
 M methionine          1.1          1           1
 N asparagine          3.2          3           1
 P proline            12.8         12           2
 Q glutamine           4.3          4           1
 R arginine            8.5          8           1
 S serine              8.5          8           2
 T threonine           2.1          2           1
 V valine              3.2          3           1
 W tryptophan          0.0          0           0
 Y tyrosine            0.0          0           0
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291634          0.059   PREDICTED: hypothetical protein XP_002346062 
LOC100291096          0.059   PREDICTED: hypothetical protein XP_002346952 
LOC100287232          0.059   PREDICTED: hypothetical protein XP_002342816 
LOC100287232          0.059   PREDICTED: hypothetical protein 
DMRTA2                0.059   DMRT-like family A2 
EBF4                  0.053   early B-cell factor 4 
RANBP9                0.047   RAN binding protein 9 
LOC100290946          0.041   PREDICTED: hypothetical protein XP_002347121 
LOC100288840          0.041   PREDICTED: hypothetical protein XP_002344246 
MLLT6                 0.041   myeloid/lymphoid or mixed-lineage leukemia (trithora...
NOVA2                 0.041   neuro-oncological ventral antigen 2 
CABLES1               0.041   Cdk5 and Abl enzyme substrate 1 isoform 2 
CCDC64                0.035   coiled-coil domain containing 64 
LOC100292126          0.035   PREDICTED: hypothetical protein XP_002344885 
LOC100289332          0.035   PREDICTED: hypothetical protein 
LOC100289332          0.035   PREDICTED: hypothetical protein XP_002343384 
GSX2                  0.035   GS homeobox 2 
KLRG2                 0.035   killer cell lectin-like receptor subfamily G, member...
FOXN1                 0.035   forkhead box N1 
KLF2                  0.029   Kruppel-like factor 
LOC100292397          0.029   PREDICTED: hypothetical protein 
LOC100131251          0.029   PREDICTED: hypothetical protein 
LOC100131251          0.029   PREDICTED: hypothetical protein 
ZCCHC2                0.029   zinc finger, CCHC domain containing 2 
MAGEE1                0.029   melanoma antigen family E, 1 
UNCX                  0.029   UNC homeobox 
NBEA                  0.024   neurobeachin 
SP5                   0.024   Sp5 transcription factor 
MAPK1IP1L             0.024   MAPK-interacting and spindle-stabilizing protein [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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