BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|239755190 PREDICTED: hypothetical protein [Homo sapiens] (98 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|239755190 PREDICTED: hypothetical protein [Homo sapiens] 211 8e-56 gi|239749686 PREDICTED: hypothetical protein [Homo sapiens] 211 8e-56 gi|239743954 PREDICTED: hypothetical protein XP_002344279 [Homo ... 211 8e-56 gi|197276594 RNA binding motif protein 20 [Homo sapiens] 32 0.083 gi|5174545 myocyte enhancer factor 2D [Homo sapiens] 31 0.19 gi|40807489 egf-like module containing, mucin-like, hormone rece... 29 0.92 gi|239756172 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|239750674 PREDICTED: hypothetical protein [Homo sapiens] 28 1.2 gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo ... 28 1.2 gi|163310741 LIM and calponin homology domains 1 isoform a [Homo... 28 1.2 gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens] 28 1.6 gi|118498364 dapper 1 isoform 2 [Homo sapiens] 28 2.1 gi|24158478 dapper 1 isoform 1 [Homo sapiens] 28 2.1 gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 27 2.7 gi|215422375 neural precursor cell expressed, developmentally do... 27 2.7 gi|5453680 neural precursor cell expressed, developmentally down... 27 2.7 gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] 27 4.6 gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo ... 27 4.6 gi|169174934 PREDICTED: similar to ADAMTS-like 2 [Homo sapiens] 27 4.6 gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo ... 27 4.6 gi|81158080 cystin 1 [Homo sapiens] 27 4.6 gi|223718260 ADAMTS-like 2 precursor [Homo sapiens] 26 6.0 gi|41281450 ADAMTS-like 2 precursor [Homo sapiens] 26 6.0 gi|27894378 chloride intracellular channel 6 [Homo sapiens] 26 6.0 gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [H... 26 7.8 gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [H... 26 7.8 gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] 26 7.8 gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo ... 26 7.8 gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo ... 26 7.8 gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapi... 26 7.8 >gi|239755190 PREDICTED: hypothetical protein [Homo sapiens] Length = 98 Score = 211 bits (538), Expect = 8e-56 Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD Sbjct: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 Query: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI Sbjct: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98 >gi|239749686 PREDICTED: hypothetical protein [Homo sapiens] Length = 98 Score = 211 bits (538), Expect = 8e-56 Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD Sbjct: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 Query: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI Sbjct: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98 >gi|239743954 PREDICTED: hypothetical protein XP_002344279 [Homo sapiens] Length = 98 Score = 211 bits (538), Expect = 8e-56 Identities = 98/98 (100%), Positives = 98/98 (100%) Query: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD Sbjct: 1 MLSQCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 Query: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI Sbjct: 61 HIQASGTCQDAIDGPGPNPAREGKGRDRTLETHGCLAI 98 >gi|197276594 RNA binding motif protein 20 [Homo sapiens] Length = 1227 Score = 32.3 bits (72), Expect = 0.083 Identities = 15/40 (37%), Positives = 20/40 (50%) Query: 48 SEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRD 87 S P R +PR H + +C + PGP+ A G GRD Sbjct: 635 SRSPVSRSLSPRSHTPSFTSCSSSHSPPGPSRADWGNGRD 674 >gi|5174545 myocyte enhancer factor 2D [Homo sapiens] Length = 521 Score = 31.2 bits (69), Expect = 0.19 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%) Query: 4 QCPFKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQ 63 Q P + PQ P QQP Q Q Q +P+ P +SH+ P + N +P H+ Sbjct: 368 QQPQQPQQPQPPQQQPPQPQQPQPQQPQQPQ--QPPQQQSHLVPVSLSNLIPGSPLPHVG 425 Query: 64 ASGT 67 A+ T Sbjct: 426 AALT 429 >gi|40807489 egf-like module containing, mucin-like, hormone receptor-like sequence 1 [Homo sapiens] Length = 886 Score = 28.9 bits (63), Expect = 0.92 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%) Query: 40 SWESHVSPSEIPNGRQRTPRDH--IQASGTCQDAID 73 SWE H+ P+ PN + RD A TC + +D Sbjct: 17 SWEGHIRPTRKPNTKGNNCRDSTLCPAYATCTNTVD 52 >gi|239756172 PREDICTED: hypothetical protein [Homo sapiens] Length = 122 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90 ES + +PN +P + G C GP +PA+ G+ R L Sbjct: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53 >gi|239750674 PREDICTED: hypothetical protein [Homo sapiens] Length = 122 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90 ES + +PN +P + G C GP +PA+ G+ R L Sbjct: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53 >gi|239744984 PREDICTED: hypothetical protein XP_002343349 [Homo sapiens] Length = 122 Score = 28.5 bits (62), Expect = 1.2 Identities = 14/49 (28%), Positives = 21/49 (42%) Query: 42 ESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90 ES + +PN +P + G C GP +PA+ G+ R L Sbjct: 5 ESKAAELRVPNSLFPSPPSNPLLGGHCGRPTKGPAASPAKSGRSRPTIL 53 >gi|163310741 LIM and calponin homology domains 1 isoform a [Homo sapiens] Length = 1083 Score = 28.5 bits (62), Expect = 1.2 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 10/86 (11%) Query: 6 PFKALSPQI---PNQQPFQGGATQDQAFDEPRLFGVPSWESHV--SPSEIPNGRQRTPRD 60 P +PQ+ P+Q T +P+ + +H SPSE R+++PR+ Sbjct: 928 PHCGTNPQLAQDPSQNQQTSNPTHSSEDVKPKTLPLDKSINHQIESPSE---RRKKSPRE 984 Query: 61 HIQAS--GTCQDAIDGPGPNPAREGK 84 H QA C G PN + GK Sbjct: 985 HFQAGPFSPCSPTPPGQSPNRSISGK 1010 >gi|47458036 hereditary sensory neuropathy, type II [Homo sapiens] Length = 434 Score = 28.1 bits (61), Expect = 1.6 Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 13 QIPNQQPFQGGATQDQAFDEP 33 QIP Q+P QGG T F+ P Sbjct: 180 QIPEQKPVQGGPTSSSVFEFP 200 >gi|118498364 dapper 1 isoform 2 [Homo sapiens] Length = 799 Score = 27.7 bits (60), Expect = 2.1 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGT 67 +A S ++P + GA D P+ + H S I G +P++ Q SG Sbjct: 390 QAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHARCSAIGTGE--SPKESAQLSGA 447 Query: 68 CQDAIDGPGPNPAREGK 84 GP P +E K Sbjct: 448 SPKESPSRGPAPPQENK 464 >gi|24158478 dapper 1 isoform 1 [Homo sapiens] Length = 836 Score = 27.7 bits (60), Expect = 2.1 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%) Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGT 67 +A S ++P + GA D P+ + H S I G +P++ Q SG Sbjct: 427 QAESKRVPLPEGCPSGAASDLQSKHLPKTAKPASQEHARCSAIGTGE--SPKESAQLSGA 484 Query: 68 CQDAIDGPGPNPAREGK 84 GP P +E K Sbjct: 485 SPKESPSRGPAPPQENK 501 >gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] Length = 715 Score = 27.3 bits (59), Expect = 2.7 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDA 71 +P ++ T+ + + R PS S SPS P+G Q +D QA T A Sbjct: 646 VPRSPDWKRSPTRTSSLSQNR---TPSKTSSHSPSTFPSGGQTLSQDDSQADATTSKA 700 >gi|215422375 neural precursor cell expressed, developmentally down-regulated 9 isoform 3 [Homo sapiens] Length = 834 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQR 56 ++LSP P Q Q +Q+ A+D PR GV E SE N ++R Sbjct: 295 QSLSPNHPPPQLGQSVGSQNDAYDVPR--GVQFLEPPAETSEKANPQER 341 >gi|5453680 neural precursor cell expressed, developmentally down-regulated 9 isoform 1 [Homo sapiens] Length = 834 Score = 27.3 bits (59), Expect = 2.7 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 8 KALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQR 56 ++LSP P Q Q +Q+ A+D PR GV E SE N ++R Sbjct: 295 QSLSPNHPPPQLGQSVGSQNDAYDVPR--GVQFLEPPAETSEKANPQER 341 >gi|239753883 PREDICTED: hypothetical protein [Homo sapiens] Length = 296 Score = 26.6 bits (57), Expect = 4.6 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 54 RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLET 92 R R PR + + PGP GKGR+R L T Sbjct: 126 RLRRPRHRLPGGSR---RLPAPGPRAPAPGKGRERELRT 161 >gi|239748442 PREDICTED: hypothetical protein XP_002346660 [Homo sapiens] Length = 296 Score = 26.6 bits (57), Expect = 4.6 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 54 RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLET 92 R R PR + + PGP GKGR+R L T Sbjct: 126 RLRRPRHRLPGGSR---RLPAPGPRAPAPGKGRERELRT 161 >gi|169174934 PREDICTED: similar to ADAMTS-like 2 [Homo sapiens] Length = 660 Score = 26.6 bits (57), Expect = 4.6 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 13/78 (16%) Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAID 73 IP+ G A+ ++ + RLFG P + + PS+ G+ + + C+ A Sbjct: 73 IPHNGSLYGQASSERLGLDNRLFGHPGLDMELGPSQ---GQ--------ETNEVCEQAGG 121 Query: 74 GPGPNPAREGKG-RDRTL 90 G P R GKG RDR + Sbjct: 122 GACEGPPR-GKGFRDRNV 138 >gi|239742378 PREDICTED: hypothetical protein XP_002342507 [Homo sapiens] Length = 296 Score = 26.6 bits (57), Expect = 4.6 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 3/39 (7%) Query: 54 RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLET 92 R R PR + + PGP GKGR+R L T Sbjct: 126 RLRRPRHRLPGGSR---RLPAPGPRAPAPGKGRERELRT 161 >gi|81158080 cystin 1 [Homo sapiens] Length = 158 Score = 26.6 bits (57), Expect = 4.6 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 10/55 (18%) Query: 46 SPSEIPNG----------RQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTL 90 SP +P G R+R P + G + G P+P GRD TL Sbjct: 17 SPESLPAGPGAAALEGGTRRRVPVAAAEVPGAAAEEAPGRDPSPVAPPDGRDETL 71 >gi|223718260 ADAMTS-like 2 precursor [Homo sapiens] Length = 951 Score = 26.2 bits (56), Expect = 6.0 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%) Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAID 73 +P+ G A+ ++ + RLFG P + + PS+ G+ + + C+ A Sbjct: 364 VPHNGSLYGQASSERLGLDNRLFGHPGLDMELGPSQ---GQ--------ETNEVCEQAGG 412 Query: 74 GPGPNPAREGKG-RDRTL 90 G P R GKG RDR + Sbjct: 413 GACEGPPR-GKGFRDRNV 429 >gi|41281450 ADAMTS-like 2 precursor [Homo sapiens] Length = 951 Score = 26.2 bits (56), Expect = 6.0 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 13/78 (16%) Query: 14 IPNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAID 73 +P+ G A+ ++ + RLFG P + + PS+ G+ + + C+ A Sbjct: 364 VPHNGSLYGQASSERLGLDNRLFGHPGLDMELGPSQ---GQ--------ETNEVCEQAGG 412 Query: 74 GPGPNPAREGKG-RDRTL 90 G P R GKG RDR + Sbjct: 413 GACEGPPR-GKGFRDRNV 429 >gi|27894378 chloride intracellular channel 6 [Homo sapiens] Length = 686 Score = 26.2 bits (56), Expect = 6.0 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 4/80 (5%) Query: 18 QPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRDHIQASGTCQDAIDGPGP 77 Q +G + A EPR E +P QR ASG D++D GP Sbjct: 106 QQVEGASPGRGAQGEPRGEAQREPEDSAAPERQEEAEQRPEVPEGSASGEAGDSVDAEGP 165 Query: 78 ---NPAREGKGRDRTLETHG 94 N EG D ++E G Sbjct: 166 LGDNIEAEGPAGD-SVEAEG 184 >gi|242117953 SH3 domain-containing protein C1orf113 isoform 1 [Homo sapiens] Length = 756 Score = 25.8 bits (55), Expect = 7.8 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 15 PNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 P Q + G A ++P P E+ P E P+ +RTP + Sbjct: 561 PRQAELKSGPASRPALEKPH----PHEEATTLPEEAPSNDERTPEE 602 >gi|242117948 SH3 domain-containing protein C1orf113 isoform 2 [Homo sapiens] Length = 645 Score = 25.8 bits (55), Expect = 7.8 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Query: 15 PNQQPFQGGATQDQAFDEPRLFGVPSWESHVSPSEIPNGRQRTPRD 60 P Q + G A ++P P E+ P E P+ +RTP + Sbjct: 450 PRQAELKSGPASRPALEKPH----PHEEATTLPEEAPSNDERTPEE 491 >gi|239753405 PREDICTED: hypothetical protein [Homo sapiens] Length = 219 Score = 25.8 bits (55), Expect = 7.8 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 46 SPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLE 91 SP R PR +GT GP +R G+GR R L+ Sbjct: 132 SPRRAIEAGARPPRQR-PGAGTAAARASRAGPRASRRGRGRGRGLQ 176 >gi|239747975 PREDICTED: hypothetical protein XP_002346485 [Homo sapiens] Length = 219 Score = 25.8 bits (55), Expect = 7.8 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 46 SPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLE 91 SP R PR +GT GP +R G+GR R L+ Sbjct: 132 SPRRAIEAGARPPRQR-PGAGTAAARASRAGPRASRRGRGRGRGLQ 176 >gi|239741872 PREDICTED: hypothetical protein XP_002342329 [Homo sapiens] Length = 219 Score = 25.8 bits (55), Expect = 7.8 Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 1/46 (2%) Query: 46 SPSEIPNGRQRTPRDHIQASGTCQDAIDGPGPNPAREGKGRDRTLE 91 SP R PR +GT GP +R G+GR R L+ Sbjct: 132 SPRRAIEAGARPPRQR-PGAGTAAARASRAGPRASRRGRGRGRGLQ 176 >gi|239508790 PREDICTED: hypothetical protein, partial [Homo sapiens] Length = 490 Score = 25.8 bits (55), Expect = 7.8 Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 5/73 (6%) Query: 7 FKALSPQIPNQQPFQGGATQDQAFDEPRLFGVPSWESHVS--PSEIPNGRQRTPRDHIQA 64 + +SP P P G + L GVPS S VS PS++P+ P Sbjct: 97 YSLVSPHRPLVSPLLSGVPSPPSDVPSLLSGVPSLPSDVSSPPSDVPSLLSDVPS---LL 153 Query: 65 SGTCQDAIDGPGP 77 SG D P P Sbjct: 154 SGVPSPPSDVPSP 166 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.315 0.135 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 5,365,995 Number of Sequences: 37866 Number of extensions: 288313 Number of successful extensions: 556 Number of sequences better than 10.0: 30 Number of HSP's better than 10.0 without gapping: 10 Number of HSP's successfully gapped in prelim test: 24 Number of HSP's that attempted gapping in prelim test: 545 Number of HSP's gapped (non-prelim): 36 length of query: 98 length of database: 18,247,518 effective HSP length: 69 effective length of query: 29 effective length of database: 15,634,764 effective search space: 453408156 effective search space used: 453408156 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.