Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC653348 Sequence: fasta or formatted (660aa) NCBI GI: 169174934
Description:

PREDICTED: similar to ADAMTS-like 2

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.1         40           2
 C cysteine            7.0         46           2
 D aspartate           5.6         37           2
 E glutamate           7.6         50           2
 F phenylalanine       2.7         18           2
 G glycine             8.8         58           3
 H histidine           1.8         12           1
 I isoleucine          1.5         10           1
 K lysine              4.1         27           2
 L leucine             6.1         40           2
 M methionine          1.7         11           1
 N asparagine          3.3         22           1
 P proline             7.9         52           2
 Q glutamine           4.1         27           1
 R arginine            6.8         45           2
 S serine              8.8         58           3
 T threonine           5.9         39           2
 V valine              5.3         35           2
 W tryptophan          2.3         15           1
 Y tyrosine            2.7         18           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to ADAMTS-like 2 
ADAMTSL2              0.965   ADAMTS-like 2 precursor 
ADAMTSL2              0.965   ADAMTS-like 2 precursor 
THSD4                 0.150   thrombospondin, type I, domain containing 4 
ADAMTSL4              0.142   thrombospondin repeat containing 1 isoform 1 
ADAMTS9               0.122   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS20              0.107   a disintegrin-like and metalloprotease with thrombo...
ADAMTS18              0.105   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS16              0.103   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTSL1              0.092   ADAMTS-like 1 isoform 4 precursor 
ADAMTS6               0.089   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS10              0.086   ADAM metallopeptidase with thrombospondin type 1 mot...
PAPLN                 0.085   papilin 
ADAMTS7               0.082   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS19              0.082   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTSL3              0.080   ADAMTS-like 3 precursor 
ADAMTS17              0.080   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS13              0.070   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.070   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS13              0.070   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS3               0.068   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS12              0.067   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTSL4              0.064   thrombospondin repeat containing 1 isoform 2 
ADAMTS14              0.059   ADAM metallopeptidase with thrombospondin type 1 mot...
ADAMTS14              0.059   ADAM metallopeptidase with thrombospondin type 1 mo...
ADAMTS2               0.057   ADAM metallopeptidase with thrombospondin type 1 mo...
THSD7B                0.055   thrombospondin, type I, domain containing 7B 
THSD7A                0.053   thrombospondin, type I, domain containing 7A 
ADAMTSL1              0.046   ADAMTS-like 1 isoform 2 precursor 
BAI1                  0.041   brain-specific angiogenesis inhibitor 1 precursor [...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press