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Search of human proteins with 239755157
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239755157 PREDICTED: similar to astrotactin 2 [Homo sapiens]
(451 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239755157 PREDICTED: similar to astrotactin 2 [Homo sapiens] 899 0.0
gi|46488919 astrotactin 2 isoform c [Homo sapiens] 763 0.0
gi|46488917 astrotactin 2 isoform b [Homo sapiens] 763 0.0
gi|46488915 astrotactin 2 isoform a [Homo sapiens] 627 e-180
gi|46488923 astrotactin isoform 1 [Homo sapiens] 365 e-101
gi|46488921 astrotactin isoform 2 [Homo sapiens] 365 e-101
gi|4758646 kinesin family member 3B [Homo sapiens] 33 0.53
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 33 0.53
gi|222136611 poliovirus receptor-related 4 [Homo sapiens] 33 0.53
gi|14790190 spen homolog, transcriptional regulator [Homo sapiens] 33 0.69
gi|108773804 Fraser syndrome 1 [Homo sapiens] 32 0.90
gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precurs... 32 0.90
gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo... 31 2.0
gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo... 31 2.0
gi|149363695 hypothetical protein LOC25943 [Homo sapiens] 31 2.6
gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precurs... 31 2.6
gi|19923957 major facilitator superfamily domain containing 3 [H... 31 2.6
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 30 3.4
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 30 3.4
gi|33598912 activin A receptor, type IB isoform c precursor [Hom... 30 3.4
gi|33598910 activin A receptor, type IB isoform b precursor [Hom... 30 3.4
gi|4757720 activin A receptor, type IB isoform a precursor [Homo... 30 3.4
gi|167466217 integrin alpha L isoform b precursor [Homo sapiens] 30 3.4
gi|167466215 integrin alpha L isoform a precursor [Homo sapiens] 30 3.4
gi|68508961 centromere protein C 1 [Homo sapiens] 30 3.4
gi|82830424 gon-4-like isoform a [Homo sapiens] 30 3.4
gi|221139892 hypothetical protein LOC339804 isoform 1 [Homo sapi... 30 4.5
gi|192807323 SWI/SNF-related matrix-associated actin-dependent r... 30 4.5
gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo sap... 30 4.5
gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo sap... 30 4.5
>gi|239755157 PREDICTED: similar to astrotactin 2 [Homo sapiens]
Length = 451
Score = 899 bits (2322), Expect = 0.0
Identities = 451/451 (100%), Positives = 451/451 (100%)
Query: 1 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 60
MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS
Sbjct: 1 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 60
Query: 61 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 120
VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF
Sbjct: 61 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 120
Query: 121 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 180
RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP
Sbjct: 121 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 180
Query: 181 GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS 240
GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS
Sbjct: 181 GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS 240
Query: 241 RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 300
RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA
Sbjct: 241 RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 300
Query: 301 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 360
MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP
Sbjct: 301 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 360
Query: 361 WVRDLCGQRTTDACEQLCDPETESGWLARKTGYMNTMTTASVQRSEVSVLSVVVQVKDLL 420
WVRDLCGQRTTDACEQLCDPETESGWLARKTGYMNTMTTASVQRSEVSVLSVVVQVKDLL
Sbjct: 361 WVRDLCGQRTTDACEQLCDPETESGWLARKTGYMNTMTTASVQRSEVSVLSVVVQVKDLL 420
Query: 421 PLFEDFFTSQWDTCSEVRRRLLQVNFCVSAR 451
PLFEDFFTSQWDTCSEVRRRLLQVNFCVSAR
Sbjct: 421 PLFEDFFTSQWDTCSEVRRRLLQVNFCVSAR 451
>gi|46488919 astrotactin 2 isoform c [Homo sapiens]
Length = 1339
Score = 763 bits (1970), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 60
MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS
Sbjct: 149 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 208
Query: 61 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 120
VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF
Sbjct: 209 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 268
Query: 121 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 180
RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP
Sbjct: 269 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 328
Query: 181 GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS 240
GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS
Sbjct: 329 GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS 388
Query: 241 RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 300
RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA
Sbjct: 389 RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 448
Query: 301 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 360
MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP
Sbjct: 449 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 508
Query: 361 WVRDLCGQRTTDACEQLCDPET 382
WVRDLCGQRTTDACEQLCDPET
Sbjct: 509 WVRDLCGQRTTDACEQLCDPET 530
>gi|46488917 astrotactin 2 isoform b [Homo sapiens]
Length = 1335
Score = 763 bits (1970), Expect = 0.0
Identities = 382/382 (100%), Positives = 382/382 (100%)
Query: 1 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 60
MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS
Sbjct: 149 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 208
Query: 61 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 120
VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF
Sbjct: 209 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 268
Query: 121 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 180
RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP
Sbjct: 269 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 328
Query: 181 GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS 240
GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS
Sbjct: 329 GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS 388
Query: 241 RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 300
RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA
Sbjct: 389 RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 448
Query: 301 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 360
MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP
Sbjct: 449 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 508
Query: 361 WVRDLCGQRTTDACEQLCDPET 382
WVRDLCGQRTTDACEQLCDPET
Sbjct: 509 WVRDLCGQRTTDACEQLCDPET 530
>gi|46488915 astrotactin 2 isoform a [Homo sapiens]
Length = 1288
Score = 627 bits (1616), Expect = e-180
Identities = 325/382 (85%), Positives = 326/382 (85%), Gaps = 51/382 (13%)
Query: 1 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 60
MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS
Sbjct: 149 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 208
Query: 61 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 120
VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF
Sbjct: 209 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESF 268
Query: 121 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 180
RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP
Sbjct: 269 RSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHP 328
Query: 181 GEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKS 240
GEEKVDFEKK S G+ K
Sbjct: 329 GEEKVDFEKKG------------------------------------GISFGRAK----- 347
Query: 241 RGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 300
GTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA
Sbjct: 348 ----------GTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILA 397
Query: 301 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 360
MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP
Sbjct: 398 MVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQINATSP 457
Query: 361 WVRDLCGQRTTDACEQLCDPET 382
WVRDLCGQRTTDACEQLCDPET
Sbjct: 458 WVRDLCGQRTTDACEQLCDPET 479
>gi|46488923 astrotactin isoform 1 [Homo sapiens]
Length = 1294
Score = 365 bits (937), Expect = e-101
Identities = 197/392 (50%), Positives = 258/392 (65%), Gaps = 18/392 (4%)
Query: 1 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 60
+SG DI LV WRQQWLENGTL FH+ PT + E EE++ ILHIS
Sbjct: 96 ISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQHESAEEELRILHIS 155
Query: 61 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQ--KSASTEATHEIHYIPSVLLGPQARE 118
VMGG+IALLL +L + LY +RRW KRRR+PQ KSAS EA +EIHYIPSVL+G RE
Sbjct: 156 VMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRE 215
Query: 119 SFRSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSRE-----DEFGSQVTHT 173
S R++R+Q HNS + IRETPILD Y+ + + +H+ RE ++F SQVT T
Sbjct: 216 SLRNARVQGHNSSGTLSIRETPILDGYEYDITD----LRHHLQRECMNGGEDFASQVTRT 271
Query: 174 LDSLGHPGEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRS-TSAG 232
LDSL E+ + SLM K+K++ A +P++ Q L S TS+
Sbjct: 272 LDSLQGCNEKS----GMDLTPGSDNAKLSLMNKYKDNIIATSPVDSNHQQATLLSHTSSS 327
Query: 233 KRKR-RSKSRGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSK-GLLKSPVNKTALT 290
+RKR +K+R G +F +G SG+EA+++ QLTFYT+ RSRRRS+ G +SPVNKT LT
Sbjct: 328 QRKRINNKARAGSAFLNPEGDSGTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLT 387
Query: 291 LIAVSSCILAMVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLS 350
LI+++SC++ +VC S ++CPL VK+TLHVPEH IADGS F++ EGS LD SDWLNPA++
Sbjct: 388 LISITSCVIGLVCSSHVNCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVV 447
Query: 351 LYYQINATSPWVRDLCGQRTTDACEQLCDPET 382
L+ Q N++ PW DLC +R D CE CDPET
Sbjct: 448 LFSQQNSSGPWAMDLCARRLLDPCEHQCDPET 479
>gi|46488921 astrotactin isoform 2 [Homo sapiens]
Length = 1216
Score = 365 bits (937), Expect = e-101
Identities = 197/392 (50%), Positives = 258/392 (65%), Gaps = 18/392 (4%)
Query: 1 MSGTAADISLVHWRQQWLENGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHIS 60
+SG DI LV WRQQWLENGTL FH+ PT + E EE++ ILHIS
Sbjct: 96 ISGNTEDIPLVRWRQQWLENGTLLFHIHHQDGAPSLPGQDPTEEPQHESAEEELRILHIS 155
Query: 61 VMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQ--KSASTEATHEIHYIPSVLLGPQARE 118
VMGG+IALLL +L + LY +RRW KRRR+PQ KSAS EA +EIHYIPSVL+G RE
Sbjct: 156 VMGGMIALLLSILCLVMILYTRRRWCKRRRVPQPQKSASAEAANEIHYIPSVLIGGHGRE 215
Query: 119 SFRSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSRE-----DEFGSQVTHT 173
S R++R+Q HNS + IRETPILD Y+ + + +H+ RE ++F SQVT T
Sbjct: 216 SLRNARVQGHNSSGTLSIRETPILDGYEYDITD----LRHHLQRECMNGGEDFASQVTRT 271
Query: 174 LDSLGHPGEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRS-TSAG 232
LDSL E+ + SLM K+K++ A +P++ Q L S TS+
Sbjct: 272 LDSLQGCNEKS----GMDLTPGSDNAKLSLMNKYKDNIIATSPVDSNHQQATLLSHTSSS 327
Query: 233 KRKR-RSKSRGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSK-GLLKSPVNKTALT 290
+RKR +K+R G +F +G SG+EA+++ QLTFYT+ RSRRRS+ G +SPVNKT LT
Sbjct: 328 QRKRINNKARAGSAFLNPEGDSGTEAENDPQLTFYTDPSRSRRRSRVGSPRSPVNKTTLT 387
Query: 291 LIAVSSCILAMVCGSQMSCPLTVKVTLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLS 350
LI+++SC++ +VC S ++CPL VK+TLHVPEH IADGS F++ EGS LD SDWLNPA++
Sbjct: 388 LISITSCVIGLVCSSHVNCPLVVKITLHVPEHLIADGSRFILLEGSQLDASDWLNPAQVV 447
Query: 351 LYYQINATSPWVRDLCGQRTTDACEQLCDPET 382
L+ Q N++ PW DLC +R D CE CDPET
Sbjct: 448 LFSQQNSSGPWAMDLCARRLLDPCEHQCDPET 479
>gi|4758646 kinesin family member 3B [Homo sapiens]
Length = 747
Score = 33.1 bits (74), Expect = 0.53
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 15/91 (16%)
Query: 170 VTHTLDSLGHPGEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRST 229
V TL +L + K K ++ ++L+++F+E EI +L+ L
Sbjct: 324 VEETLTTLRYANRAK---NIKNKPRVNEDPKDALLREFQE--------EIARLKAQLEKR 372
Query: 230 SAGKRKRRSKSRGGISFGRAKGTSGSEADDE 260
S G+RKRR K R G G G E ++E
Sbjct: 373 SIGRRKRREKRRE----GGGSGGGGEEEEEE 399
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 33.1 bits (74), Expect = 0.53
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 227 RSTSAGKRKRRSKSRGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPVNK 286
RSTS + RRSKS+ S R++ S S + + + +SR RSK KSP +
Sbjct: 158 RSTSKSRSARRSKSKSS-SVSRSRSRSRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEE 216
Query: 287 TALT 290
A++
Sbjct: 217 GAVS 220
>gi|222136611 poliovirus receptor-related 4 [Homo sapiens]
Length = 510
Score = 33.1 bits (74), Expect = 0.53
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 20 NGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHISVM--GGLIALLLLLLVFTV 77
+G HVS S + +Q T L +P E +Q+ ++ SV+ G + ALL LLV V
Sbjct: 310 SGIYVCHVSNEFSSRDSQVTVDVL-DPQEDSGKQVDLVSASVVVVGVIAALLFCLLVVVV 368
Query: 78 ALYAQRRWQKRRRIPQK 94
L ++ +K +++ QK
Sbjct: 369 VLMSRYHRRKAQQMTQK 385
>gi|14790190 spen homolog, transcriptional regulator [Homo sapiens]
Length = 3664
Score = 32.7 bits (73), Expect = 0.69
Identities = 37/199 (18%), Positives = 67/199 (33%), Gaps = 37/199 (18%)
Query: 149 EDEEPPRRANHVSREDEFGSQVTHTLDSLG-----------HPGEEKVDFEKKAAAEATQ 197
ED + P H + E E + + ++ + +PGE + D + A A+A Q
Sbjct: 2201 EDRDKPA---HQASETELAAAIGSIINDISGEPENFPAPPPYPGESQTDLQPPAGAQALQ 2257
Query: 198 ETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGKRKRRSKSRGGISFGRAKGTSGSEA 257
+ E + S T +PP+ + +K G S + ++
Sbjct: 2258 PSEEGMETDEAVSGILETEAATESSRPPVNAPDPSAGPTDTKEARGNSSETSHSVPEAKG 2317
Query: 258 DDETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILAMVCGSQMSCPLTVKVTL 317
E ++T + ++ ++ K NK + V
Sbjct: 2318 SKEVEVTLVRKDKGRQKTTRSRRKRNTNKKVVA-----------------------PVES 2354
Query: 318 HVPEHFIADGSSFVVSEGS 336
HVPE A G S +EG+
Sbjct: 2355 HVPESNQAQGESPAANEGT 2373
>gi|108773804 Fraser syndrome 1 [Homo sapiens]
Length = 4011
Score = 32.3 bits (72), Expect = 0.90
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 60 SVMGGLIALLLLLLVFTVALYAQRRWQKRRR 90
S+ L A++LLLLVF VA + R+ QK+R+
Sbjct: 3904 SIGSALAAIMLLLLVFLVACFINRKCQKQRK 3934
>gi|11056030 protocadherin gamma subfamily A, 2 isoform 1 precursor
[Homo sapiens]
Length = 932
Score = 32.3 bits (72), Expect = 0.90
Identities = 26/137 (18%), Positives = 49/137 (35%), Gaps = 6/137 (4%)
Query: 45 EPSEIVEEQMHILHISVMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEI 104
EPS I + L++ V ++ + L V + + RRW K R + S
Sbjct: 679 EPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLTGMQSS 738
Query: 105 HYI----PSVLLGPQARESFRSSRLQTHNSVIGVPIRETPILDDYDCEEDE--EPPRRAN 158
H++ L + E ++ + + + P ++ CE+ + P+
Sbjct: 739 HFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKDFLSAPQSLL 798
Query: 159 HVSREDEFGSQVTHTLD 175
RE+ F Q D
Sbjct: 799 EEEREETFSQQAPPNTD 815
>gi|23308715 SRY (sex determining region Y)-box 5 isoform b [Homo
sapiens]
Length = 750
Score = 31.2 bits (69), Expect = 2.0
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 153 PPRRANHVSREDEFGSQVTHTLDS--LGHPGEEKVDFEKKAAAEATQETVESLMQKFKES 210
P + + +E G Q +L S LG P K + + V++L Q+ E
Sbjct: 90 PHNSSTSPQKAEEGGRQSGESLSSTALGTPERRK---------GSLADVVDTLKQRKMEE 140
Query: 211 FRANTPIEIGQLQPPLRSTSAGKRKRRSKSRGGISFGRAKGTSGSEADDETQLTFYTEQY 270
N P E P + + K + + G +FG KGT S A+ E QL Q
Sbjct: 141 LIKNEPEET----PSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQL 196
Query: 271 RSRR 274
S R
Sbjct: 197 TSLR 200
>gi|23308713 SRY (sex determining region Y)-box 5 isoform a [Homo
sapiens]
Length = 763
Score = 31.2 bits (69), Expect = 2.0
Identities = 33/124 (26%), Positives = 48/124 (38%), Gaps = 15/124 (12%)
Query: 153 PPRRANHVSREDEFGSQVTHTLDS--LGHPGEEKVDFEKKAAAEATQETVESLMQKFKES 210
P + + +E G Q +L S LG P K + + V++L Q+ E
Sbjct: 103 PHNSSTSPQKAEEGGRQSGESLSSTALGTPERRK---------GSLADVVDTLKQRKMEE 153
Query: 211 FRANTPIEIGQLQPPLRSTSAGKRKRRSKSRGGISFGRAKGTSGSEADDETQLTFYTEQY 270
N P E P + + K + + G +FG KGT S A+ E QL Q
Sbjct: 154 LIKNEPEET----PSIEKLLSKDWKDKLLAMGSGNFGEIKGTPESLAEKERQLMGMINQL 209
Query: 271 RSRR 274
S R
Sbjct: 210 TSLR 213
>gi|149363695 hypothetical protein LOC25943 [Homo sapiens]
Length = 1177
Score = 30.8 bits (68), Expect = 2.6
Identities = 33/127 (25%), Positives = 55/127 (43%), Gaps = 9/127 (7%)
Query: 24 YFHVSMSSSGQLAQATAPTLQEPSEI-----VEEQMHILHISVMGGLIALLLL-LLVFTV 77
+F +S S + + P L + +EI +E I IS++ GL L F V
Sbjct: 711 HFAISSISQEPVMRTHLPVLLQQAEINTTHRIESDKVI--ISIVTGLPGCHASELCAFLV 768
Query: 78 ALYAQ-RRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRSSRLQTHNSVIGVPI 136
L+ + RW R+I S A H Y+ S L Q R + +S+ ++ ++ V
Sbjct: 769 TLHKECGRWMVYRQIMDSSECFHAAHFQRYLSSALEAQQNRSARQSAYIRKKTRLLVVLQ 828
Query: 137 RETPILD 143
T ++D
Sbjct: 829 GYTDVID 835
>gi|14196462 protocadherin gamma subfamily A, 2 isoform 2 precursor
[Homo sapiens]
Length = 823
Score = 30.8 bits (68), Expect = 2.6
Identities = 28/143 (19%), Positives = 53/143 (37%), Gaps = 10/143 (6%)
Query: 45 EPSEIVEEQMHILHISVMGGLIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEI 104
EPS I + L++ V ++ + L V + + RRW K R + S
Sbjct: 679 EPSAIPNDSDLTLYLVVAVAAVSCVFLAFVIVLLAHRLRRWHKSRLLQASGGSLTGMQSS 738
Query: 105 HYI----PSVLLGPQARESFRSSRLQTHNSVIGVPIRETPILDDYDCEEDE--EPPRRAN 158
H++ L + E ++ + + + P ++ CE+ + P+
Sbjct: 739 HFVGVDGVRAFLQTYSHEVSLTADSRKSHLIFPQPNYADTLISQESCEKKDFLSAPQSLL 798
Query: 159 HVSREDEFGSQV----THTLDSL 177
RE+ F + T+ L SL
Sbjct: 799 EEEREETFSQVIYLFTTYVLASL 821
>gi|19923957 major facilitator superfamily domain containing 3 [Homo
sapiens]
Length = 412
Score = 30.8 bits (68), Expect = 2.6
Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 38 ATAPTLQEPSEI-----VEEQMHILHISVMGGLIALLL---------LLLVFTVALYAQR 83
A A L EP+E+ V+ + L ++ GG + LL LLL T L A
Sbjct: 121 ALAVQLLEPAELGPGNTVQVVAYKLGAALAGGALLALLPTFSWPQLFLLLAATYWLAAAL 180
Query: 84 RWQKR--RRIPQKSASTEATHEIHYIPSVLLGP 114
W RR+PQ+ S + H H + VL P
Sbjct: 181 AWAAPALRRLPQQPPSEQRPHTAHLLRDVLAVP 213
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 30.4 bits (67), Expect = 3.4
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 115 QARESFRSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPP-RRANHVSREDEFGSQVTHT 173
+AR R RL + + I++ ++ CEE+EE R + +E ++ +T
Sbjct: 1294 EARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT-- 1351
Query: 174 LDSLGHPGEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGK 233
E++ KA E T E +E +++ K S + + G P + S K
Sbjct: 1352 --------EKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDK 1403
Query: 234 --RKRRSKSRG 242
++ K RG
Sbjct: 1404 DDESKKQKKRG 1414
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 30.4 bits (67), Expect = 3.4
Identities = 30/131 (22%), Positives = 54/131 (41%), Gaps = 13/131 (9%)
Query: 115 QARESFRSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPP-RRANHVSREDEFGSQVTHT 173
+AR R RL + + I++ ++ CEE+EE R + +E ++ +T
Sbjct: 1294 EARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT-- 1351
Query: 174 LDSLGHPGEEKVDFEKKAAAEATQETVESLMQKFKESFRANTPIEIGQLQPPLRSTSAGK 233
E++ KA E T E +E +++ K S + + G P + S K
Sbjct: 1352 --------EKQWLKTLKAIEEGTLEEIEEEVRQKKSSRKRKRDSDAGSSTPTTSTRSRDK 1403
Query: 234 --RKRRSKSRG 242
++ K RG
Sbjct: 1404 DDESKKQKKRG 1414
>gi|33598912 activin A receptor, type IB isoform c precursor [Homo
sapiens]
Length = 487
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 32 SGQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLL--VFTVALYAQRRWQKRR 89
SG L + P++ P E+V ++ G + LL L++ VF V Y QR + R+
Sbjct: 110 SGHLKEPEHPSMWGPVELV---------GIIAGPVFLLFLIIIIVFLVINYHQRVYHNRQ 160
Query: 90 RIPQKSASTE 99
R+ + S E
Sbjct: 161 RLDMEDPSCE 170
>gi|33598910 activin A receptor, type IB isoform b precursor [Homo
sapiens]
Length = 476
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 32 SGQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLL--VFTVALYAQRRWQKRR 89
SG L + P++ P E+V ++ G + LL L++ VF V Y QR + R+
Sbjct: 110 SGHLKEPEHPSMWGPVELV---------GIIAGPVFLLFLIIIIVFLVINYHQRVYHNRQ 160
Query: 90 RIPQKSASTE 99
R+ + S E
Sbjct: 161 RLDMEDPSCE 170
>gi|4757720 activin A receptor, type IB isoform a precursor [Homo
sapiens]
Length = 505
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
Query: 32 SGQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLL--VFTVALYAQRRWQKRR 89
SG L + P++ P E+V ++ G + LL L++ VF V Y QR + R+
Sbjct: 110 SGHLKEPEHPSMWGPVELV---------GIIAGPVFLLFLIIIIVFLVINYHQRVYHNRQ 160
Query: 90 RIPQKSASTE 99
R+ + S E
Sbjct: 161 RLDMEDPSCE 170
>gi|167466217 integrin alpha L isoform b precursor [Homo sapiens]
Length = 1086
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 20 NGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLLVFTV 77
N + +FH+ S+ LAQ + + + E+QM L++ V+ G+ LLLLLL+F V
Sbjct: 976 NSSKHFHL-YGSNASLAQV----VMKVDVVYEKQM--LYLYVLSGIGGLLLLLLIFIV 1026
>gi|167466215 integrin alpha L isoform a precursor [Homo sapiens]
Length = 1170
Score = 30.4 bits (67), Expect = 3.4
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 7/58 (12%)
Query: 20 NGTLYFHVSMSSSGQLAQATAPTLQEPSEIVEEQMHILHISVMGGLIALLLLLLVFTV 77
N + +FH+ S+ LAQ + + + E+QM L++ V+ G+ LLLLLL+F V
Sbjct: 1060 NSSKHFHL-YGSNASLAQV----VMKVDVVYEKQM--LYLYVLSGIGGLLLLLLIFIV 1110
>gi|68508961 centromere protein C 1 [Homo sapiens]
Length = 943
Score = 30.4 bits (67), Expect = 3.4
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 316 TLHVPEHFIADGSSFVVSEGSYLDISDWLNPAKLSLYYQI 355
TLH + ++ G SF V G+Y +I + N + L+ QI
Sbjct: 902 TLHETPYILSTGDSFYVPSGNYYNIKNLRNEESVLLFTQI 941
>gi|82830424 gon-4-like isoform a [Homo sapiens]
Length = 2240
Score = 30.4 bits (67), Expect = 3.4
Identities = 45/189 (23%), Positives = 72/189 (38%), Gaps = 34/189 (17%)
Query: 146 DCEEDEEPPR--RANHVSREDEFGSQVTHTLDSLGHPGEEKVDFEKKAAAEATQETVESL 203
D EE+EEPP+ A+ R+ E G Q H ++ E D K A + +S
Sbjct: 1810 DVEEEEEPPKIPTASKNKRKKEIGVQ-NHDKET------EWPDGAKDCACSCHEGGPDSK 1862
Query: 204 MQKFKESFRANTPIEI-----GQLQPPLRSTSAGKRKRRSKSRGGISFGRAKGTSGSEAD 258
++K K ++ ++ + + P + + S G G+ K EA
Sbjct: 1863 LKKSKRRSCSHCSSKVCDSKSYKSKEPHELVGSSPHREASPMPGAKEAGQGKDMMEEEAP 1922
Query: 259 DETQLTFYTEQYRSRRRSKGLLKSPVNKTALTLIAVSSCILAMVCGSQMSCPLTVKVTLH 318
+E + T T+ R KG + PV+ A+ GS + P V VT
Sbjct: 1923 EERESTEATQSRTVRTTRKG--EMPVSGLAV--------------GSTLPSPREVTVT-- 1964
Query: 319 VPEHFIADG 327
E + DG
Sbjct: 1965 --ERLLLDG 1971
>gi|221139892 hypothetical protein LOC339804 isoform 1 [Homo
sapiens]
Length = 194
Score = 30.0 bits (66), Expect = 4.5
Identities = 38/177 (21%), Positives = 71/177 (40%), Gaps = 11/177 (6%)
Query: 65 LIALLLLLLVFTVALYAQRRWQKRRRIPQKSASTEATHEIHYIPSVLLGPQARESFRSSR 124
LI +LLLL+VF + R+ ++ +++P A+ + V P+ E R
Sbjct: 25 LICILLLLVVFLYKCFQGRKGKETKKVPCTDANGGV--DCAAAKVVTSNPEDHE-----R 77
Query: 125 LQTHNSVIGVPIRETPILDDYDCEEDEEPPRRANHVSREDEFGSQVTHTLDSLGHPGEEK 184
+ + VP+R ++ E P + E+E ++ G G+E+
Sbjct: 78 ILMQVMNLNVPMRPGILVQRQSKEVLATPLENRRDMEAEEENQINEKQEPENAGETGQEE 137
Query: 185 VDFEKK--AAAEATQETVESLMQKFK--ESFRANTPIEIGQLQPPLRSTSAGKRKRR 237
D +K + T VES + K R +++G P RS + ++R+
Sbjct: 138 DDGLQKIHTSVTRTPSVVESQKRPLKGVTFSREVIVVDLGNEYPTPRSYTREHKERK 194
>gi|192807323 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform A [Homo sapiens]
Length = 1679
Score = 30.0 bits (66), Expect = 4.5
Identities = 38/183 (20%), Positives = 77/183 (42%), Gaps = 28/183 (15%)
Query: 115 QARESFRSSRLQTHNSVIGVPIRETPILDDYDCEEDEEPP-RRANHVSREDEFGSQVTHT 173
+AR R RL + + I++ ++ CEE+EE R + +E ++ +T
Sbjct: 1327 EARNPKRKPRLMEEDELPSWIIKDDAEVERLTCEEEEEKMFGRGSRHRKEVDYSDSLT-- 1384
Query: 174 LDSLGHPGEEKVDFEKKAAAEATQETVESLMQ--KFKESF----RANTPIEIG---QLQP 224
+ + KK + +T S+ + +F+ RA+ IE G +++
Sbjct: 1385 ----------EKQWLKKITGKDIHDTASSVARGLQFQRGLQFCTRASKAIEEGTLEEIEE 1434
Query: 225 PLRSTSAGKRKRRSKSRGGISFGRAKGTSGSEADDETQLTFYTEQYRSRRRSKGLLKSPV 284
+R + ++++R G S T + DDE++ ++ R R ++ L +P
Sbjct: 1435 EVRQKKSSRKRKRDSDAG--SSTPTTSTRSRDKDDESK----KQKKRGRPPAEKLSPNPP 1488
Query: 285 NKT 287
N T
Sbjct: 1489 NLT 1491
>gi|169169865 PREDICTED: hypothetical protein LOC285754 [Homo sapiens]
Length = 1151
Score = 30.0 bits (66), Expect = 4.5
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 255 SEADDET--QLTFYTEQYRSRRRSKGLLKSPVNKTALTLI---AVSSCILAMV------C 303
SE DD + +FYT++ K LL S V +TL A + ++A V C
Sbjct: 1021 SEVDDNQIGKFSFYTKE----AILKLLLHSGVENMQVTLACQAAQKNALMAAVQQVYFYC 1076
Query: 304 GSQMSCPLTVKVTLH 318
Q SCP VKV+LH
Sbjct: 1077 TPQGSCPANVKVSLH 1091
>gi|169168870 PREDICTED: hypothetical protein LOC285754 [Homo sapiens]
Length = 1151
Score = 30.0 bits (66), Expect = 4.5
Identities = 27/75 (36%), Positives = 36/75 (48%), Gaps = 15/75 (20%)
Query: 255 SEADDET--QLTFYTEQYRSRRRSKGLLKSPVNKTALTLI---AVSSCILAMV------C 303
SE DD + +FYT++ K LL S V +TL A + ++A V C
Sbjct: 1021 SEVDDNQIGKFSFYTKE----AILKLLLHSGVENMQVTLACQAAQKNALMAAVQQVYFYC 1076
Query: 304 GSQMSCPLTVKVTLH 318
Q SCP VKV+LH
Sbjct: 1077 TPQGSCPANVKVSLH 1091
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.130 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,869,788
Number of Sequences: 37866
Number of extensions: 725872
Number of successful extensions: 2698
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 2660
Number of HSP's gapped (non-prelim): 69
length of query: 451
length of database: 18,247,518
effective HSP length: 106
effective length of query: 345
effective length of database: 14,233,722
effective search space: 4910634090
effective search space used: 4910634090
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.