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Search of human proteins with 239754950
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo
sapiens]
(104 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo ... 227 2e-60
gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo ... 227 2e-60
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 32 0.11
gi|164663768 hypothetical protein LOC339263 [Homo sapiens] 32 0.14
gi|7657214 hormonally upregulated Neu-associated kinase [Homo sa... 30 0.41
gi|7669528 neuregulin 2 isoform 2 [Homo sapiens] 30 0.53
gi|7669532 neuregulin 2 isoform 4 [Homo sapiens] 30 0.53
gi|7669530 neuregulin 2 isoform 3 [Homo sapiens] 30 0.53
gi|4758832 neuregulin 2 isoform 1 [Homo sapiens] 30 0.53
gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens] 30 0.53
gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo sa... 29 0.69
gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo s... 29 0.69
gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo s... 29 0.69
gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo s... 29 0.69
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens] 29 0.69
gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1 ... 29 0.69
gi|58761548 tau tubulin kinase 1 [Homo sapiens] 28 1.2
gi|239754468 PREDICTED: hypothetical protein [Homo sapiens] 28 1.5
gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo ... 28 1.5
gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo ... 28 1.5
gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo ... 28 2.0
gi|59806357 submaxillary gland androgen regulated protein 3 homo... 28 2.0
gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens] 28 2.0
gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo sap... 27 2.6
gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo sap... 27 2.6
gi|71143119 signal-induced proliferation-associated 1 like 3 [Ho... 27 2.6
gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo ... 27 3.4
gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo ... 27 3.4
gi|23397518 hypothetical protein LOC169693 [Homo sapiens] 27 3.4
gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens] 27 3.4
>gi|239754950 PREDICTED: hypothetical protein XP_002346164 [Homo
sapiens]
Length = 104
Score = 227 bits (578), Expect = 2e-60
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60
MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP
Sbjct: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60
Query: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104
PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY
Sbjct: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104
>gi|239749490 PREDICTED: hypothetical protein XP_002347051 [Homo
sapiens]
Length = 104
Score = 227 bits (578), Expect = 2e-60
Identities = 104/104 (100%), Positives = 104/104 (100%)
Query: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60
MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP
Sbjct: 1 MGRDVNRVREPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCP 60
Query: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104
PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY
Sbjct: 61 PHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKEGY 104
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 32.0 bits (71), Expect = 0.11
Identities = 14/27 (51%), Positives = 14/27 (51%)
Query: 46 PCPVSINHRRRNSCPPHRERTARPPPR 72
P P RRR PP R RT PPPR
Sbjct: 561 PSPAPPPRRRRTPTPPPRRRTPSPPPR 587
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 44 PHPCPVSINHRRRNSCPPHRERTARPPPR 72
P P P + PP R RT PPPR
Sbjct: 550 PSPPPTRRRRSPSPAPPPRRRRTPTPPPR 578
Score = 25.8 bits (55), Expect = 7.7
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 54 RRRNSCPPHRERTARPPP 71
RR + PP + RTA PPP
Sbjct: 602 RRYSPSPPPKRRTASPPP 619
>gi|164663768 hypothetical protein LOC339263 [Homo sapiens]
Length = 221
Score = 31.6 bits (70), Expect = 0.14
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 25 PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPRHARTRLQGASLR 84
P P F S + +P PCPV + + +S P R R PP R A+ L +LR
Sbjct: 26 PYAPWSFTPSSRAPTAWVRP-PCPVWASRLQEHSPEPRRARA--PPTRRAQAALYAPALR 82
Query: 85 L 85
L
Sbjct: 83 L 83
>gi|7657214 hormonally upregulated Neu-associated kinase [Homo
sapiens]
Length = 714
Score = 30.0 bits (66), Expect = 0.41
Identities = 18/43 (41%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 29 SPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPP 71
SP L S++ L HP VS H +NS PP E PPP
Sbjct: 600 SPGLPSGSMSPLHTPLHPTLVSFAHEDKNS-PPKEEGLCCPPP 641
>gi|7669528 neuregulin 2 isoform 2 [Homo sapiens]
Length = 844
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75
NH R+N CP H+ R+ P H R
Sbjct: 433 NHLRQNMCPAHQNRSLANGPSHPR 456
>gi|7669532 neuregulin 2 isoform 4 [Homo sapiens]
Length = 852
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75
NH R+N CP H+ R+ P H R
Sbjct: 441 NHLRQNMCPAHQNRSLANGPSHPR 464
>gi|7669530 neuregulin 2 isoform 3 [Homo sapiens]
Length = 858
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75
NH R+N CP H+ R+ P H R
Sbjct: 447 NHLRQNMCPAHQNRSLANGPSHPR 470
>gi|4758832 neuregulin 2 isoform 1 [Homo sapiens]
Length = 850
Score = 29.6 bits (65), Expect = 0.53
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 52 NHRRRNSCPPHRERTARPPPRHAR 75
NH R+N CP H+ R+ P H R
Sbjct: 439 NHLRQNMCPAHQNRSLANGPSHPR 462
>gi|155029550 chromosome 9 open reading frame 79 [Homo sapiens]
Length = 1445
Score = 29.6 bits (65), Expect = 0.53
Identities = 20/54 (37%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
Query: 32 LCCSSVAVLFDKPHPCPVS---INHRRRNSCPPHRERTARPPPRHARTRLQGAS 82
L CS A K H CPV I R + PP RE + P H R R+ S
Sbjct: 1375 LACSPKAT--PKGHHCPVKNRGIRDRDSSWAPPPREPVSPAGPHHHRPRMASTS 1426
>gi|15826862 coiled-coil domain containing 120 isoform 3 [Homo
sapiens]
Length = 630
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
PL PS P +C SS VL+++P P P R + PP R ARP
Sbjct: 380 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 423
>gi|254039614 coiled-coil domain containing 120 isoform 4 [Homo
sapiens]
Length = 618
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
PL PS P +C SS VL+++P P P R + PP R ARP
Sbjct: 368 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 411
>gi|254039612 coiled-coil domain containing 120 isoform 2 [Homo
sapiens]
Length = 649
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
PL PS P +C SS VL+++P P P R + PP R ARP
Sbjct: 368 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 411
>gi|254039610 coiled-coil domain containing 120 isoform 1 [Homo
sapiens]
Length = 661
Score = 29.3 bits (64), Expect = 0.69
Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 25 PLKPS---PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARP 69
PL PS P +C SS VL+++P P P R + PP R ARP
Sbjct: 380 PLAPSASGPPVCKSS-EVLYERPQPTPA---FSSRTAGPPDPPRAARP 423
>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
Length = 1316
Score = 29.3 bits (64), Expect = 0.69
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 53 HRRRNSCPPHRERTARPPPRH 73
HRRR +CP R+R R P H
Sbjct: 978 HRRRRTCPRERDRQDRHAPEH 998
>gi|187936958 UDP-N-acteylglucosamine pyrophosphorylase 1-like 1
[Homo sapiens]
Length = 507
Score = 29.3 bits (64), Expect = 0.69
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 56 RNSCPPHRERTARP--PPRHARTRLQGASL-RLGKGPRFDQESQGEWRKEGY 104
R C E ARP PP RL+ R+G+ R D E++ W +EG+
Sbjct: 47 REHCRRAAEACARPHGPPPDLAARLRPLPPERVGRASRSDPETRRRWEEEGF 98
>gi|58761548 tau tubulin kinase 1 [Homo sapiens]
Length = 1321
Score = 28.5 bits (62), Expect = 1.2
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 25 PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPR---HARTRLQGA 81
P SP L S+ A P S++ RR + P H+ R PPPR AR + G
Sbjct: 1228 PAPRSPRLPASTSAARNASASPRSQSLS-RRESPSPSHQARPGVPPPRGVPPARAQPDGT 1286
Query: 82 SLRLG--KGPRFDQESQ 96
G KGPR ++Q
Sbjct: 1287 PSPGGSKKGPRGKLQAQ 1303
>gi|239754468 PREDICTED: hypothetical protein [Homo sapiens]
Length = 146
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 59 CPPHRERTARPPPRHARTRLQGASLRL 85
C HR R+A P RTR+ GAS RL
Sbjct: 109 CWGHRRRSAPEPVPAVRTRVHGASRRL 135
>gi|239749023 PREDICTED: hypothetical protein XP_002346884 [Homo
sapiens]
Length = 159
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 59 CPPHRERTARPPPRHARTRLQGASLRL 85
C HR R+A P RTR+ GAS RL
Sbjct: 122 CWGHRRRSAPEPVPAVRTRVHGASRRL 148
>gi|239743042 PREDICTED: hypothetical protein XP_002342725 [Homo
sapiens]
Length = 159
Score = 28.1 bits (61), Expect = 1.5
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 59 CPPHRERTARPPPRHARTRLQGASLRL 85
C HR R+A P RTR+ GAS RL
Sbjct: 122 CWGHRRRSAPEPVPAVRTRVHGASRRL 148
>gi|239741731 PREDICTED: hypothetical protein XP_002342307 [Homo
sapiens]
Length = 316
Score = 27.7 bits (60), Expect = 2.0
Identities = 25/74 (33%), Positives = 27/74 (36%), Gaps = 17/74 (22%)
Query: 11 PHELTTRAYHFLLLPLKPS-----PFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRER 65
PH+ T+R LL PS P C S VL P P PP
Sbjct: 201 PHDPTSRGPGRLLTREPPSRKLPPPLPLCRSRWVLAPPPPP------------APPGPNA 248
Query: 66 TARPPPRHARTRLQ 79
A PP R R RLQ
Sbjct: 249 AAHPPLRPPRARLQ 262
>gi|59806357 submaxillary gland androgen regulated protein 3 homolog
A precursor [Homo sapiens]
Length = 134
Score = 27.7 bits (60), Expect = 2.0
Identities = 21/71 (29%), Positives = 25/71 (35%), Gaps = 2/71 (2%)
Query: 25 PLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTA--RPPPRHARTRLQGAS 82
PL P P C PHP P PP+ PPP + R+Q S
Sbjct: 34 PLAPPPPPCFPFGTGFVPPPHPPPYGPGRFPPPLSPPYGPGRIPPSPPPPYGPGRIQSHS 93
Query: 83 LRLGKGPRFDQ 93
L GP + Q
Sbjct: 94 LPPPYGPGYPQ 104
>gi|21281675 growth arrest-specific 2 like 2 [Homo sapiens]
Length = 880
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/64 (25%), Positives = 26/64 (40%)
Query: 9 REPHELTTRAYHFLLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTAR 68
R L+ + H +P + S+V+ + P P P+ N + +C RT R
Sbjct: 704 RTKASLSAKGTHMRKVPPQGGQDCSASTVSASPEAPTPSPLDPNSDKAKACLSKGRRTLR 763
Query: 69 PPPR 72
P R
Sbjct: 764 KPKR 767
>gi|33620716 retinoblastoma-binding protein 6 isoform 2 [Homo
sapiens]
Length = 1758
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 50 SINHRRRN-SCPPHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKE 102
S N+R R+ S HR R+ PP R +R + G+ P QGE +E
Sbjct: 707 SRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETERE 760
>gi|33620769 retinoblastoma-binding protein 6 isoform 1 [Homo
sapiens]
Length = 1792
Score = 27.3 bits (59), Expect = 2.6
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 50 SINHRRRN-SCPPHRERTARPPPRHARTRLQGASLRLGKGPRFDQESQGEWRKE 102
S N+R R+ S HR R+ PP R +R + G+ P QGE +E
Sbjct: 741 SRNYRSRSRSHGYHRSRSRSPPYRRYHSRSRSPQAFRGQSPNKRNVPQGETERE 794
>gi|71143119 signal-induced proliferation-associated 1 like 3 [Homo
sapiens]
Length = 1781
Score = 27.3 bits (59), Expect = 2.6
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 8/46 (17%)
Query: 27 KPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPHRERTARPPPR 72
+PSPF +SV F P RN P +RT PPPR
Sbjct: 1431 QPSPFQLSASVPKSFFSKQPV--------RNKHPTGWKRTEEPPPR 1468
>gi|239747312 PREDICTED: hypothetical protein XP_002346417 [Homo
sapiens]
Length = 144
Score = 26.9 bits (58), Expect = 3.4
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 22 LLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPH----RERTARPPPRHARTR 77
LLLP P S V++ P P ++ RR PP R A PPP +R R
Sbjct: 53 LLLPAPPPG----SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGGDAHPPPAFSRAR 108
Query: 78 LQGASL 83
GA L
Sbjct: 109 SSGALL 114
>gi|239741134 PREDICTED: hypothetical protein XP_002342117 [Homo
sapiens]
Length = 144
Score = 26.9 bits (58), Expect = 3.4
Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 22 LLLPLKPSPFLCCSSVAVLFDKPHPCPVSINHRRRNSCPPH----RERTARPPPRHARTR 77
LLLP P S V++ P P ++ RR PP R A PPP +R R
Sbjct: 53 LLLPAPPPG----SRVSLGSAPGRPPPPALAARRAPPAPPVLIQLRGGDAHPPPAFSRAR 108
Query: 78 LQGASL 83
GA L
Sbjct: 109 SSGALL 114
>gi|23397518 hypothetical protein LOC169693 [Homo sapiens]
Length = 170
Score = 26.9 bits (58), Expect = 3.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 56 RNSCPPHRERTARPPPRHARTRLQ 79
+ SCP RE + PPP + T L+
Sbjct: 109 KQSCPAEREASGIPPPLYTETGLE 132
>gi|122937285 immunoglobulin superfamily 5 like [Homo sapiens]
Length = 407
Score = 26.9 bits (58), Expect = 3.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 44 PHPCPVSINHRRRNSCPPHRERTARPPPRHA 74
P C S +R +SC P +R + PPR A
Sbjct: 356 PKSCESSDPEQRNSSCGPPHQRADQRPPRPA 386
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.139 0.462
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,450,199
Number of Sequences: 37866
Number of extensions: 287144
Number of successful extensions: 944
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 901
Number of HSP's gapped (non-prelim): 70
length of query: 104
length of database: 18,247,518
effective HSP length: 75
effective length of query: 29
effective length of database: 15,407,568
effective search space: 446819472
effective search space used: 446819472
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.