Guide to the Human Genome
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Name: IGSF5 Sequence: fasta or formatted (407aa) NCBI GI: 122937285
Description:

immunoglobulin superfamily 5 like

Referenced in:

Gap Junctions and Tight Junctions
Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         20           2
 C cysteine            5.7         23           4
 D aspartate           3.4         14           1
 E glutamate           5.9         24           2
 F phenylalanine       2.5         10           1
 G glycine             7.1         29           3
 H histidine           1.5          6           1
 I isoleucine          3.7         15           2
 K lysine              4.2         17           2
 L leucine             8.4         34           2
 M methionine          1.7          7           1
 N asparagine          5.2         21           1
 P proline             6.6         27           2
 Q glutamine           4.7         19           1
 R arginine            6.1         25           3
 S serine             11.1         45           2
 T threonine           7.6         31           2
 V valine              6.4         26           2
 W tryptophan          2.2          9           2
 Y tyrosine            1.2          5           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   immunoglobulin superfamily 5 like 
BTNL2                 0.028   butyrophilin-like 2 
KIRREL2               0.025   kin of IRRE-like 2 isoform c 
KIRREL2               0.025   kin of IRRE-like 2 isoform a 
PXDN                  0.023   peroxidasin 
LOC100131830          0.022   PREDICTED: hypothetical protein 
LOC100131830          0.022   PREDICTED: hypothetical protein 
LOC100131830          0.022   PREDICTED: hypothetical protein 
MUSK                  0.021   skeletal muscle receptor tyrosine kinase 
OBSCN                 0.021   obscurin, cytoskeletal calmodulin and titin-interact...
OBSCN                 0.021   obscurin, cytoskeletal calmodulin and titin-interac...
SLC34A2               0.021   solute carrier family 34 (sodium phosphate), member...
PTK7                  0.018   PTK7 protein tyrosine kinase 7 isoform a precursor [...
PTK7                  0.018   PTK7 protein tyrosine kinase 7 isoform d precursor [...
PTK7                  0.018   PTK7 protein tyrosine kinase 7 isoform b precursor [...
SYT8                  0.017   synaptotagmin VIII 
REPS1                 0.016   RALBP1 associated Eps domain containing 1 isoform a...
NTRK3                 0.015   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.015   neurotrophic tyrosine kinase, receptor, type 3 isofo...
NTRK3                 0.015   neurotrophic tyrosine kinase, receptor, type 3 isofo...
PTK7                  0.015   PTK7 protein tyrosine kinase 7 isoform c precursor [...
AGER                  0.015   advanced glycosylation end product-specific receptor...
NEGR1                 0.015   neuronal growth regulator 1 
HMCN2                 0.015   PREDICTED: hemicentin 2 
HMCN2                 0.015   PREDICTED: hemicentin 2 
HMCN2                 0.015   PREDICTED: hemicentin 2 
MNT                   0.015   MAX binding protein 
KRTAP5-9              0.015   keratin associated protein 5-9 
HSPG2                 0.013   heparan sulfate proteoglycan 2 
BTN2A2                0.013   butyrophilin, subfamily 2, member A2 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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