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Search of human proteins with 239754900
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239754900 PREDICTED: similar to transcription factor 23
[Homo sapiens]
(167 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239754900 PREDICTED: similar to transcription factor 23 [Homo... 337 4e-93
gi|239749439 PREDICTED: similar to transcription factor 23 [Homo... 326 6e-90
gi|239743573 PREDICTED: similar to transcription factor 23 [Homo... 326 6e-90
gi|75677394 transcription factor 23 [Homo sapiens] 131 2e-31
gi|116805332 musculin [Homo sapiens] 77 7e-15
gi|38202237 transcription factor 21 [Homo sapiens] 72 3e-13
gi|38202239 transcription factor 21 [Homo sapiens] 72 3e-13
gi|4758506 basic helix-loop-helix transcription factor HAND1 [Ho... 68 4e-12
gi|12545384 basic helix-loop-helix transcription factor HAND2 [H... 65 3e-11
gi|4507741 twist [Homo sapiens] 62 2e-10
gi|29126247 basic helix-loop-helix family, member a15 [Homo sapi... 60 1e-09
gi|48255909 basic helix-loop-helix transcription factor 15 [Homo... 59 1e-09
gi|5031943 nescient helix loop helix 1 [Homo sapiens] 59 3e-09
gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo sapi... 55 4e-08
gi|161484632 nescient helix loop helix 2 [Homo sapiens] 54 6e-08
gi|5031945 nescient helix loop helix 2 [Homo sapiens] 54 6e-08
gi|148922889 scleraxis homolog B [Homo sapiens] 52 2e-07
gi|186972126 scleraxis homolog A [Homo sapiens] 52 2e-07
gi|14149724 mesoderm posterior 1 [Homo sapiens] 50 7e-07
gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens] 50 1e-06
gi|21553337 atonal homolog 7 [Homo sapiens] 50 1e-06
gi|90403598 mesoderm posterior 2 homolog [Homo sapiens] 49 2e-06
gi|30039710 pancreas specific transcription factor, 1a [Homo sap... 47 1e-05
gi|17981708 twist homolog 2 [Homo sapiens] 45 3e-05
gi|4885075 atonal homolog 1 [Homo sapiens] 44 8e-05
gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens] 44 8e-05
gi|22748877 basic helix-loop-helix domain containing, class B, 5... 44 8e-05
gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens] 42 2e-04
gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens] 42 2e-04
gi|226498192 atonal homolog 8 [Homo sapiens] 42 3e-04
>gi|239754900 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 337 bits (863), Expect = 4e-93
Identities = 167/167 (100%), Positives = 167/167 (100%)
Query: 1 MDRGRPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERS 60
MDRGRPAGSPLSASAEPAPLAAAIRD RPGRTGPGPAGLGGGSCSGSGRPAAENAARERS
Sbjct: 1 MDRGRPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERS 60
Query: 61 RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL
Sbjct: 61 RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
Query: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP
Sbjct: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
>gi|239749439 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 326 bits (835), Expect = 6e-90
Identities = 162/167 (97%), Positives = 163/167 (97%)
Query: 1 MDRGRPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERS 60
MDRGRPAGSPLSASAEPAPLAAAIRD RPGRTGPGPAG GGGS SGSGRPAA NAARERS
Sbjct: 1 MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS 60
Query: 61 RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
RVQTLRHAFLE+QRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL
Sbjct: 61 RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
Query: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP
Sbjct: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
>gi|239743573 PREDICTED: similar to transcription factor 23 [Homo
sapiens]
Length = 167
Score = 326 bits (835), Expect = 6e-90
Identities = 162/167 (97%), Positives = 163/167 (97%)
Query: 1 MDRGRPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERS 60
MDRGRPAGSPLSASAEPAPLAAAIRD RPGRTGPGPAG GGGS SGSGRPAA NAARERS
Sbjct: 1 MDRGRPAGSPLSASAEPAPLAAAIRDSRPGRTGPGPAGPGGGSRSGSGRPAAANAARERS 60
Query: 61 RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
RVQTLRHAFLE+QRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL
Sbjct: 61 RVQTLRHAFLELQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGAL 120
Query: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP
Sbjct: 121 RGDGYLHPVKKWPMRSRLYIGATGQFLKHSVSGEKTNHDNTPTDSQP 167
>gi|75677394 transcription factor 23 [Homo sapiens]
Length = 214
Score = 131 bits (330), Expect = 2e-31
Identities = 73/118 (61%), Positives = 81/118 (68%), Gaps = 3/118 (2%)
Query: 28 RPGRTGPGPAGL-GGGSCSGSGRPAAENAARERSRVQTLRHAFLEVQRTLPSVPPDTKLS 86
R R PGP G GG G + ENAARERSRV+TLR AFL +Q LP+VPPDTKLS
Sbjct: 54 RWSRATPGPRGTRAGGLALGRSEASPENAARERSRVRTLRQAFLALQAALPAVPPDTKLS 113
Query: 87 KLDVLLLATTYIAHLTRSLQDDAEAPADAGLGALRGDGYLHPVKKWPMRSRLYIGATG 144
KLDVL+LA +YIAHLTR+L E P A LRG YLHP+KKWPMRSRLY G G
Sbjct: 114 KLDVLVLAASYIAHLTRTL--GHELPGPAWPPFLRGLRYLHPLKKWPMRSRLYAGGLG 169
>gi|116805332 musculin [Homo sapiens]
Length = 206
Score = 77.0 bits (188), Expect = 7e-15
Identities = 57/143 (39%), Positives = 71/143 (49%), Gaps = 28/143 (19%)
Query: 6 PAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAG--LGGGS------------CSGSGRPA 51
P G + A A + RP G G AG GGG C S R A
Sbjct: 52 PDGEEERCALGTAGSAEGCKRKRPRVAGGGGAGGSAGGGGKKPLPAKGSAAECKQSQRNA 111
Query: 52 AENAARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEA 111
A ARER+R++ L AF ++ +LP VPPDTKLSKLD L LA++YIAHL + LQ+D
Sbjct: 112 AN--ARERARMRVLSKAFSRLKTSLPWVPPDTKLSKLDTLRLASSYIAHLRQLLQEDRYE 169
Query: 112 PADAGLGALRGDGYLHPVK-KWP 133
+GY+HPV WP
Sbjct: 170 -----------NGYVHPVNLTWP 181
>gi|38202237 transcription factor 21 [Homo sapiens]
Length = 179
Score = 71.6 bits (174), Expect = 3e-13
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 14/92 (15%)
Query: 45 SGSGRPAAENAA--RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLT 102
S G+ NAA RER+R++ L AF ++ TLP VPPDTKLSKLD L LA++YIAHL
Sbjct: 73 SQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLR 132
Query: 103 RSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133
+ L +D +GY+HPV WP
Sbjct: 133 QILANDKYE-----------NGYIHPVNLTWP 153
>gi|38202239 transcription factor 21 [Homo sapiens]
Length = 179
Score = 71.6 bits (174), Expect = 3e-13
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 14/92 (15%)
Query: 45 SGSGRPAAENAA--RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLT 102
S G+ NAA RER+R++ L AF ++ TLP VPPDTKLSKLD L LA++YIAHL
Sbjct: 73 SQEGKQVQRNAANARERARMRVLSKAFSRLKTTLPWVPPDTKLSKLDTLRLASSYIAHLR 132
Query: 103 RSLQDDAEAPADAGLGALRGDGYLHPVK-KWP 133
+ L +D +GY+HPV WP
Sbjct: 133 QILANDKYE-----------NGYIHPVNLTWP 153
>gi|4758506 basic helix-loop-helix transcription factor HAND1 [Homo
sapiens]
Length = 215
Score = 67.8 bits (164), Expect = 4e-12
Identities = 43/106 (40%), Positives = 59/106 (55%), Gaps = 6/106 (5%)
Query: 6 PAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERSRVQTL 65
PAG P A+A A A D RPG++ LGG GR +ER R +++
Sbjct: 57 PAGGPPPAAAAAA--TAYGPDARPGQSPGRLEALGGRL----GRRKGSGPKKERRRTESI 110
Query: 66 RHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEA 111
AF E++ +P+VP DTKLSK+ L LAT+YIA+L L DA++
Sbjct: 111 NSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDVLAKDAQS 156
>gi|12545384 basic helix-loop-helix transcription factor HAND2 [Homo
sapiens]
Length = 217
Score = 65.1 bits (157), Expect = 3e-11
Identities = 50/124 (40%), Positives = 63/124 (50%), Gaps = 18/124 (14%)
Query: 4 GRPAGSP------LSASAEPAPLAAAIRDXRPGRTGPG--PAGLGGGSCSGSGRPAAENA 55
G P SP LS S E A AA + G PG P GLGG RP
Sbjct: 49 GHPEMSPPDYSMALSYSPEYASGAAGLDHSHYGGVPPGAGPPGLGGP------RPVKRRG 102
Query: 56 A---RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL-QDDAEA 111
+ER R Q++ AF E++ +P+VP DTKLSK+ L LAT+YIA+L L +DD
Sbjct: 103 TANRKERRRTQSINSAFAELRECIPNVPADTKLSKIKTLRLATSYIAYLMDLLAKDDQNG 162
Query: 112 PADA 115
A+A
Sbjct: 163 EAEA 166
>gi|4507741 twist [Homo sapiens]
Length = 202
Score = 62.4 bits (150), Expect = 2e-10
Identities = 44/115 (38%), Positives = 56/115 (48%), Gaps = 11/115 (9%)
Query: 4 GRPAGSPLSASAEPAPLAAAIRDXRP-GRTGPGPAGLGGGSCSGSGRPAAENA------- 55
G AG + EP A R + G G G AG GGGS SG G P +
Sbjct: 53 GGAAGGGVGGGDEPGSPAQGKRGKKSAGCGGGGGAGGGGGSSSGGGSPQSYEELQTQRVM 112
Query: 56 --ARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDD 108
RER R Q+L AF +++ +P++P D KLSK+ L LA YI L + LQ D
Sbjct: 113 ANVRERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD 166
>gi|29126247 basic helix-loop-helix family, member a15 [Homo
sapiens]
Length = 189
Score = 59.7 bits (143), Expect = 1e-09
Identities = 43/109 (39%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 4 GRPAGSPLSASAEPA------PLAAAIRDXRPGRTG-PGPAGLGGGSCSGSGRPAAENAA 56
G P GS + EPA P AA R GR PGP+G GG S R N
Sbjct: 24 GTPDGSLPNPGPEPAKGLRSRPARAAARAPGEGRRRRPGPSGPGGRRDSSIQRRLESNE- 82
Query: 57 RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
RER R+ L +AF ++ +P V D KLSK++ L LA YI LT ++
Sbjct: 83 RERQRMHKLNNAFQALREVIPHVRADKKLSKIETLTLAKNYIKSLTATI 131
>gi|48255909 basic helix-loop-helix transcription factor 15 [Homo
sapiens]
Length = 199
Score = 59.3 bits (142), Expect = 1e-09
Identities = 42/105 (40%), Positives = 56/105 (53%), Gaps = 16/105 (15%)
Query: 31 RTGPGPAG---LGGGSCSGS-----GRPAAENAARERSRVQTLRHAFLEVQRTLPSVPPD 82
R GPGP G GGG +G R AA ARER R Q++ AF ++ +P+ P D
Sbjct: 48 RRGPGPGGGRRAGGGGGAGPVVVVRQRQAAN--ARERDRTQSVNTAFTALRTLIPTEPVD 105
Query: 83 TKLSKLDVLLLATTYIAHLTRSL-----QDDAEAPADAGLGALRG 122
KLSK++ L LA++YIAHL L DD + P G+ +G
Sbjct: 106 RKLSKIETLRLASSYIAHLANVLLLGDSADDGQ-PCFRAAGSAKG 149
>gi|5031943 nescient helix loop helix 1 [Homo sapiens]
Length = 133
Score = 58.5 bits (140), Expect = 3e-09
Identities = 36/101 (35%), Positives = 49/101 (48%), Gaps = 25/101 (24%)
Query: 30 GRTGPGPAGLGGGSCSGS--GRPAAEN-----------------------AARERSRVQT 64
G G GP G GGG G G P ++ A RER RV+
Sbjct: 31 GPDGAGPGGPGGGQARGPEPGEPGRKDLQHLSREERRRRRRATAKYRTAHATRERIRVEA 90
Query: 65 LRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
AF E+++ LP++PPD KLSK+++L LA YI++L L
Sbjct: 91 FNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 131
>gi|34147558 lymphoblastic leukemia derived sequence 1 [Homo
sapiens]
Length = 280
Score = 54.7 bits (130), Expect = 4e-08
Identities = 30/58 (51%), Positives = 38/58 (65%)
Query: 56 ARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPA 113
+RER R Q + AF E+++ LP+ PPD KLSK +VL LA YI L R L+D A A A
Sbjct: 157 SRERWRQQNVNGAFAELRKLLPTHPPDRKLSKNEVLRLAMKYIGFLVRLLRDQAAALA 214
>gi|161484632 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 53.9 bits (128), Expect = 6e-08
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 54 NAARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
+A RER RV+ AF E+++ LP++PPD KLSK+++L LA YI++L L
Sbjct: 82 HATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
>gi|5031945 nescient helix loop helix 2 [Homo sapiens]
Length = 135
Score = 53.9 bits (128), Expect = 6e-08
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 54 NAARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSL 105
+A RER RV+ AF E+++ LP++PPD KLSK+++L LA YI++L L
Sbjct: 82 HATRERIRVEAFNLAFAELRKLLPTLPPDKKLSKIEILRLAICYISYLNHVL 133
>gi|148922889 scleraxis homolog B [Homo sapiens]
Length = 201
Score = 52.4 bits (124), Expect = 2e-07
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 8 GSPLSASAE-PAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENA------ARERS 60
GS S S E P + AA + R G GGG GRP E ARER
Sbjct: 29 GSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGG--PGGRPGREPRQRHTANARERD 86
Query: 61 RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHL 101
R ++ AF ++ +P+ P D KLSK++ L LA++YI+HL
Sbjct: 87 RTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHL 127
>gi|186972126 scleraxis homolog A [Homo sapiens]
Length = 201
Score = 52.4 bits (124), Expect = 2e-07
Identities = 38/101 (37%), Positives = 51/101 (50%), Gaps = 9/101 (8%)
Query: 8 GSPLSASAE-PAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENA------ARERS 60
GS S S E P + AA + R G GGG GRP E ARER
Sbjct: 29 GSDSSGSDEKPCRVHAARCGLQGARRRAGGRRAGGGG--PGGRPGREPRQRHTANARERD 86
Query: 61 RVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHL 101
R ++ AF ++ +P+ P D KLSK++ L LA++YI+HL
Sbjct: 87 RTNSVNTAFTALRTLIPTEPADRKLSKIETLRLASSYISHL 127
>gi|14149724 mesoderm posterior 1 [Homo sapiens]
Length = 268
Score = 50.4 bits (119), Expect = 7e-07
Identities = 45/123 (36%), Positives = 60/123 (48%), Gaps = 23/123 (18%)
Query: 6 PAGSPLSASAEPAPLAAAIRDXRP---GRTGPGPAGLGGGSCSGSGRPAAENAARERSRV 62
PA SP+++ A P L RD R GR G + LG SG + A+E RE+ R+
Sbjct: 47 PADSPVASPARPGTL----RDPRAPSVGRRGARSSRLG----SGQRQSASE---REKLRM 95
Query: 63 QTLRHAFLEVQRTLPS--VPPDTKLSKLDVLLLATTYIAHLT-------RSLQDDAEAPA 113
+TL A E++R LP P L+K++ L LA YI HL+ SLQ
Sbjct: 96 RTLARALHELRRFLPPSVAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQRRCRQRG 155
Query: 114 DAG 116
DAG
Sbjct: 156 DAG 158
>gi|4507363 T-cell acute lymphocytic leukemia 1 [Homo sapiens]
Length = 331
Score = 49.7 bits (117), Expect = 1e-06
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 56 ARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAE 110
+RER R Q + AF E+++ +P+ PPD KLSK ++L LA YI L + L D E
Sbjct: 194 SRERWRQQNVNGAFAELRKLIPTHPPDKKLSKNEILRLAMKYINFLAKLLNDQEE 248
Score = 30.8 bits (68), Expect = 0.56
Identities = 20/48 (41%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 12 SASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARER 59
+A+AEP + R G G GPAG GG + GR AA AR R
Sbjct: 44 AAAAEPPVIELGAR----GGPGGGPAGGGGAARDLKGRDAATAEARHR 87
>gi|21553337 atonal homolog 7 [Homo sapiens]
Length = 152
Score = 49.7 bits (117), Expect = 1e-06
Identities = 46/141 (32%), Positives = 59/141 (41%), Gaps = 15/141 (10%)
Query: 5 RPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERSRVQT 64
+P+G P A P P A G T G G + R ARER R+Q
Sbjct: 5 KPSGPPAGARVAP-PCA--------GGTECAGTCAGAGRLESAARRRLAANARERRRMQG 55
Query: 65 LRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAGLGALR--- 121
L AF ++R +P D KLSK + L +A +YI LTR L + ++ L
Sbjct: 56 LNTAFDRLRRVVPQWGQDKKLSKYETLQMALSYIMALTRILAEAERFGSERDWVGLHCEH 115
Query: 122 --GDGYL-HPVKKWPMRSRLY 139
D YL P K P S LY
Sbjct: 116 FGRDHYLPFPGAKLPGESELY 136
>gi|90403598 mesoderm posterior 2 homolog [Homo sapiens]
Length = 397
Score = 49.3 bits (116), Expect = 2e-06
Identities = 44/123 (35%), Positives = 56/123 (45%), Gaps = 23/123 (18%)
Query: 3 RGRPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENAARERSRV 62
RG P P S S+ A AA P R GPAG G + A+E RE+ R+
Sbjct: 49 RGLPQPQPPSCSSRAAEAAATT----PRRARTGPAG-------GQRQSASE---REKLRM 94
Query: 63 QTLRHAFLEVQRTLPS--VPPDTKLSKLDVLLLATTYIAHLT-------RSLQDDAEAPA 113
+TL A E++R LP P L+K++ L LA YI HL+ SLQ
Sbjct: 95 RTLARALHELRRFLPPSLAPAGQSLTKIETLRLAIRYIGHLSAVLGLSEESLQCRRRQRG 154
Query: 114 DAG 116
DAG
Sbjct: 155 DAG 157
>gi|30039710 pancreas specific transcription factor, 1a [Homo
sapiens]
Length = 328
Score = 46.6 bits (109), Expect = 1e-05
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 13/131 (9%)
Query: 6 PAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRPAAENA---------- 55
P G P S + P+ LA G GL G + + + R +
Sbjct: 108 PGGFPYSPGSPPSCLAYPCAGAAVLSPGARLRGLSGAAAAAARRRRRVRSEAELQQLRQA 167
Query: 56 --ARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPA 113
RER R+Q++ AF ++ +P++P + +LSK+D L LA YI L+ +Q D
Sbjct: 168 ANVRERRRMQSINDAFEGLRSHIPTLPYEKRLSKVDTLRLAIGYINFLSELVQADLPL-R 226
Query: 114 DAGLGALRGDG 124
G G G G
Sbjct: 227 GGGAGGCGGPG 237
>gi|17981708 twist homolog 2 [Homo sapiens]
Length = 160
Score = 45.1 bits (105), Expect = 3e-05
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 57 RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDD 108
RER R Q+L AF +++ +P++P D KLSK+ L LA YI L + LQ D
Sbjct: 74 RERQRTQSLNEAFAALRKIIPTLPSD-KLSKIQTLKLAARYIDFLYQVLQSD 124
>gi|4885075 atonal homolog 1 [Homo sapiens]
Length = 354
Score = 43.5 bits (101), Expect = 8e-05
Identities = 23/51 (45%), Positives = 31/51 (60%)
Query: 56 ARERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQ 106
ARER R+ L HAF +++ +PS D KLSK + L +A YI L+ LQ
Sbjct: 166 ARERRRMHGLNHAFDQLRNVIPSFNNDKKLSKYETLQMAQIYINALSELLQ 216
>gi|4885619 T-cell acute lymphocytic leukemia 2 [Homo sapiens]
Length = 108
Score = 43.5 bits (101), Expect = 8e-05
Identities = 22/53 (41%), Positives = 33/53 (62%)
Query: 57 RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDA 109
RER R Q + AF ++++ +P+ PPD KLSK + L LA YI L + L + +
Sbjct: 10 RERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGEQS 62
>gi|22748877 basic helix-loop-helix domain containing, class B, 5
[Homo sapiens]
Length = 381
Score = 43.5 bits (101), Expect = 8e-05
Identities = 32/97 (32%), Positives = 47/97 (48%), Gaps = 19/97 (19%)
Query: 30 GRTGPGPAGLGGGSCSGSGRPAAENA-----------------ARERSRVQTLRHAFLEV 72
G + G +G GGGS SGSG ++ ++ ARER R+ L A E+
Sbjct: 206 GGSSSGSSGGGGGSGSGSGGSSSSSSSSSKKSKEQKALRLNINARERRRMHDLNDALDEL 265
Query: 73 QRTLPSV--PPDTKLSKLDVLLLATTYIAHLTRSLQD 107
+ +P P KLSK+ LLLA YI ++L++
Sbjct: 266 RAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQALEE 302
Score = 31.2 bits (69), Expect = 0.43
Identities = 21/51 (41%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 3 RGRPAGS---PLSASAEPAPLAAAIRDXRPGRTGPGPAGLGGGSCSGSGRP 50
R RPA S PL P A + PG G G AG GGG G G P
Sbjct: 51 RERPASSSSSPLGCFEPADPEGAGLLLPPPGGGGGGSAGSGGGGGGGVGVP 101
>gi|237757328 oligodendrocyte transcription factor 1 [Homo sapiens]
Length = 271
Score = 42.4 bits (98), Expect = 2e-04
Identities = 39/118 (33%), Positives = 47/118 (39%), Gaps = 19/118 (16%)
Query: 9 SPLSASAEPAPLAAAIRDXRPGRTG--PGPAGLGGGSCSGSGRPAAENA----------A 56
S S+S+ APL +P PGP G GS RP A+ +
Sbjct: 53 SSTSSSSTTAPLLPKAAREKPEAPAEPPGPGPGSGAHPGGSARPDAKEEQQQQLRRKINS 112
Query: 57 RERSRVQ-------TLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQD 107
RER R+Q LR L P KLSK+ LLLA YI L SLQ+
Sbjct: 113 RERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQE 170
>gi|4885665 achaete-scute complex homolog-like 2 [Homo sapiens]
Length = 193
Score = 42.4 bits (98), Expect = 2e-04
Identities = 41/125 (32%), Positives = 55/125 (44%), Gaps = 17/125 (13%)
Query: 8 GSPLSASAEPAP-----LAAAIRDXRPG------RTGPGPAGLGGGSCSGSGRPAAENAA 56
G L SA PAP AA R P R P A GGG+ + A
Sbjct: 3 GGTLPRSAPPAPPVPVGCAARRRPASPELLRCSRRRRPATAETGGGAAA-----VARRNE 57
Query: 57 RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATTYIAHLTRSLQDDAEAPADAG 116
RER+RV+ + F +++ +P KLSK++ L A YI L R L + +A +A
Sbjct: 58 RERNRVKLVNLGFQALRQHVPHGGASKKLSKVETLRSAVEYIRALQRLLAEH-DAVRNAL 116
Query: 117 LGALR 121
G LR
Sbjct: 117 AGGLR 121
>gi|226498192 atonal homolog 8 [Homo sapiens]
Length = 321
Score = 41.6 bits (96), Expect = 3e-04
Identities = 41/135 (30%), Positives = 53/135 (39%), Gaps = 32/135 (23%)
Query: 5 RPAGSPLSASAEPAPLAAAIRDXRPGRTGPGPAGLGG-----------GSCSGSGRPAAE 53
RPA P + A PAP + +R P R PG + S S RP
Sbjct: 162 RPA--PSAPPAPPAPPESTVRPAPPTR--PGESSYSSISHVIYNNHQDSSASPRKRPGEA 217
Query: 54 NAA-----------------RERSRVQTLRHAFLEVQRTLPSVPPDTKLSKLDVLLLATT 96
AA RER+RV T+ AF +++ +P KLSKL +L +A
Sbjct: 218 TAASSEIKALQQTRRLLANARERTRVHTISAAFEALRKQVPCYSYGQKLSKLAILRIACN 277
Query: 97 YIAHLTRSLQDDAEA 111
YI L R D A
Sbjct: 278 YILSLARLADLDYSA 292
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.132 0.391
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,669,132
Number of Sequences: 37866
Number of extensions: 410992
Number of successful extensions: 2635
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 155
Number of HSP's that attempted gapping in prelim test: 2289
Number of HSP's gapped (non-prelim): 443
length of query: 167
length of database: 18,247,518
effective HSP length: 95
effective length of query: 72
effective length of database: 14,650,248
effective search space: 1054817856
effective search space used: 1054817856
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.