Guide to the Human Genome
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Name: LOC439957 Sequence: fasta or formatted (205aa) NCBI GI: 169217347
Description:

PREDICTED: similar to hCG1742442

Referenced in:

Y-linked Genes

Other entries for this name:
alt mRNA [205aa] PREDICTED: similar to hCG1742442
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         12           2
 C cysteine            2.9          6           1
 D aspartate           3.4          7           1
 E glutamate           1.5          3           1
 F phenylalanine       4.4          9           1
 G glycine             7.3         15           1
 H histidine           3.4          7           1
 I isoleucine          4.4          9           2
 K lysine              2.4          5           2
 L leucine            10.2         21           2
 M methionine          1.0          2           1
 N asparagine          2.0          4           2
 P proline            11.2         23           2
 Q glutamine           6.3         13           2
 R arginine            8.3         17           3
 S serine             10.2         21           2
 T threonine           6.8         14           1
 V valine              3.9          8           1
 W tryptophan          1.5          3           1
 Y tyrosine            2.9          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1742442 
LOC439957             1.000   PREDICTED: similar to hCG1742442 
LOC642424             0.717   PREDICTED: similar to hCG1742442 
LOC642424             0.717   PREDICTED: similar to hCG1742442 
LOC642424             0.717   PREDICTED: similar to hCG1742442 
LOC642838             0.695   PREDICTED: similar to hCG1742442 
LOC100132426          0.693   PREDICTED: similar to hCG1742442 
LOC100287723          0.629   PREDICTED: hypothetical protein XP_002342271 
LOC100288993          0.590   PREDICTED: hypothetical protein XP_002342967 
LOC650405             0.469   PREDICTED: similar to hCG2042707 
LOC652493             0.428   PREDICTED: similar to pre-B lymphocyte gene 1 [Homo...
LOC100130100          0.413   PREDICTED: similar to hCG26659 
LOC100291464          0.413   PREDICTED: hypothetical protein XP_002346449 
LOC100130100          0.413   PREDICTED: similar to hCG26659 
LOC100128009          0.327   PREDICTED: hypothetical protein 
LOC100128009          0.327   PREDICTED: hypothetical protein 
LOC100128009          0.327   PREDICTED: hypothetical protein 
LOC100291731          0.317   PREDICTED: similar to hCG36857 
LOC100290819          0.317   PREDICTED: hypothetical protein XP_002348319 
LOC440871             0.314   PREDICTED: similar to hCG2043206 
LOC100291786          0.305   PREDICTED: similar to hCG2043206 
LOC100291682          0.295   PREDICTED: similar to hCG1686089 
LOC100290992          0.295   PREDICTED: hypothetical protein XP_002347049 
LOC100291027          0.292   PREDICTED: hypothetical protein XP_002348323 
LOC100290481          0.150   PREDICTED: hypothetical protein XP_002348153 
LOC100293142          0.143   PREDICTED: similar to hCG2040019 
LOC100293440          0.138   PREDICTED: similar to Ig lambda chain 
LOC100293277          0.130   PREDICTED: similar to hCG2040021 
LOC651536             0.084   PREDICTED: similar to hCG96018 
LOC651536             0.084   PREDICTED: similar to hCG96018 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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