Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Search of human proteins with 239754502

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|239754502 PREDICTED: similar to hCG2040562 [Homo sapiens]
         (268 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|239754502 PREDICTED: similar to hCG2040562 [Homo sapiens]          556   e-159
gi|239749062 PREDICTED: hypothetical protein XP_002346902 [Homo ...   556   e-159
gi|239743088 PREDICTED: hypothetical protein XP_002342736 [Homo ...   556   e-159
gi|239508739 PREDICTED: similar to hCG2040562 [Homo sapiens]          556   e-159
gi|51479148 Rho GTPase activating protein 20 [Homo sapiens]           162   3e-40
gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo sap...    31   0.99 
gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo sap...    31   0.99 
gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]            31   0.99 
gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]            31   0.99 
gi|14249534 hypothetical protein LOC84915 [Homo sapiens]               29   3.8  
gi|21536468 AXL receptor tyrosine kinase isoform 2 [Homo sapiens]      29   4.9  
gi|21536466 AXL receptor tyrosine kinase isoform 1 [Homo sapiens]      29   4.9  
gi|194473700 Src homology 3 domain-containing guanine nucleotide...    29   4.9  
gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo sapi...    28   6.4  
gi|169171936 PREDICTED: hypothetical protein LOC286002 [Homo sap...    28   6.4  
gi|169171203 PREDICTED: hypothetical protein LOC286002 [Homo sap...    28   6.4  
gi|169170737 PREDICTED: hypothetical protein LOC286002 [Homo sap...    28   6.4  
gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a...    28   6.4  
gi|207113122 dynein, cytoplasmic 1, intermediate chain 1 isoform...    28   6.4  
gi|24307983 FtsJ methyltransferase domain containing 2 [Homo sap...    28   6.4  
gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]       28   6.4  
gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]       28   6.4  
gi|146134388 YLP motif containing 1 [Homo sapiens]                     28   6.4  
gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens]     28   8.4  
gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]    28   8.4  
gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]          28   8.4  
gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens]      28   8.4  
gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]            28   8.4  
gi|21359974 vitrin [Homo sapiens]                                      28   8.4  

>gi|239754502 PREDICTED: similar to hCG2040562 [Homo sapiens]
          Length = 268

 Score =  556 bits (1432), Expect = e-159
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
           MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60

Query: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
           KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120

Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
           DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180

Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
           SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240

Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
           NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268


>gi|239749062 PREDICTED: hypothetical protein XP_002346902 [Homo
           sapiens]
          Length = 268

 Score =  556 bits (1432), Expect = e-159
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
           MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60

Query: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
           KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120

Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
           DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180

Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
           SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240

Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
           NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268


>gi|239743088 PREDICTED: hypothetical protein XP_002342736 [Homo
           sapiens]
          Length = 268

 Score =  556 bits (1432), Expect = e-159
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
           MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60

Query: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
           KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120

Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
           DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180

Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
           SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240

Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
           NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268


>gi|239508739 PREDICTED: similar to hCG2040562 [Homo sapiens]
          Length = 268

 Score =  556 bits (1432), Expect = e-159
 Identities = 268/268 (100%), Positives = 268/268 (100%)

Query: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60
           MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL
Sbjct: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARL 60

Query: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120
           KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN
Sbjct: 61  KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFN 120

Query: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180
           DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI
Sbjct: 121 DLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINI 180

Query: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240
           SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF
Sbjct: 181 SLPMLRIAGPERGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLF 240

Query: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268
           NQQAPFFTDQLLACGGCGQPRLRAYSDL
Sbjct: 241 NQQAPFFTDQLLACGGCGQPRLRAYSDL 268


>gi|51479148 Rho GTPase activating protein 20 [Homo sapiens]
          Length = 1191

 Score =  162 bits (410), Expect = 3e-40
 Identities = 86/120 (71%), Positives = 92/120 (76%)

Query: 132 ITRYINLEKEKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINISLPMLRIAGPE 191
           + RYINLEKEKD PK I LKI  KDI N AYSKTITVM+S T NE IN+SLPML I G E
Sbjct: 180 LQRYINLEKEKDYPKSIPLKIFAKDIGNCAYSKTITVMNSDTANEVINMSLPMLGITGSE 239

Query: 192 RGYKLWVNSGKEEASCLLTGHEDLYGIKMSHLRDTALLTPEPKDSTTLFNQQAPFFTDQL 251
           R Y+LWVNSGKEEA   L GHE  YGIKMSHLRD+ALLTP  KDSTT FN Q PF  +QL
Sbjct: 240 RDYQLWVNSGKEEAPYPLIGHEYPYGIKMSHLRDSALLTPGSKDSTTPFNLQEPFLMEQL 299



 Score = 53.1 bits (126), Expect = 2e-07
 Identities = 26/37 (70%), Positives = 28/37 (75%)

Query: 95  RTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLKYN 131
           RTL ID + EL RGL RQE  LFLFNDL  VAK+KYN
Sbjct: 84  RTLLIDGRAELKRGLQRQERHLFLFNDLFVVAKIKYN 120


>gi|169213922 PREDICTED: hypothetical protein isoform 1 [Homo
           sapiens]
          Length = 198

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 7   CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
           CS+ L RT A  S++   R+  R  I S        +A    C  W A +PT  AR +P 
Sbjct: 27  CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85

Query: 64  GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
                    G R      RP S P   P W
Sbjct: 86  -----CSTRGPRRSRMALRPRSAPSRAPAW 110


>gi|169213920 PREDICTED: hypothetical protein isoform 2 [Homo
           sapiens]
          Length = 198

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 7   CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
           CS+ L RT A  S++   R+  R  I S        +A    C  W A +PT  AR +P 
Sbjct: 27  CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85

Query: 64  GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
                    G R      RP S P   P W
Sbjct: 86  -----CSTRGPRRSRMALRPRSAPSRAPAW 110


>gi|169214343 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 198

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 7   CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
           CS+ L RT A  S++   R+  R  I S        +A    C  W A +PT  AR +P 
Sbjct: 27  CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85

Query: 64  GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
                    G R      RP S P   P W
Sbjct: 86  -----CSTRGPRRSRMALRPRSAPSRAPAW 110


>gi|169213300 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 198

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 28/90 (31%), Positives = 35/90 (38%), Gaps = 9/90 (10%)

Query: 7   CSAQLGRTQAL-SYSGQWRTSSR--IRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKPL 63
           CS+ L RT A  S++   R+  R  I S        +A    C  W A +PT  AR +P 
Sbjct: 27  CSSSLARTSATCSFTSSRRSRVRLPISSIRARSRSPQAWARSCSGWPAREPTVAARTRP- 85

Query: 64  GFDVGVGAPGWRGGIPVPRPLSVPLDPPQW 93
                    G R      RP S P   P W
Sbjct: 86  -----CSTRGPRRSRMALRPRSAPSRAPAW 110


>gi|14249534 hypothetical protein LOC84915 [Homo sapiens]
          Length = 452

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 59  RLKPLGFDVGVG---APGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVEL-GRGLHRQEE 114
           +L P    VG+     P   G +  P+P   P  PP  P      S + L GRGL     
Sbjct: 135 KLSPAAVQVGIAPYPVPSTLGPLAYPKPPEAPAPPPGLPAAATAASVIPLPGRGLPLPPS 194

Query: 115 QLFLFNDLL 123
            L   + LL
Sbjct: 195 NLPSIHSLL 203


>gi|21536468 AXL receptor tyrosine kinase isoform 2 [Homo sapiens]
          Length = 885

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 70  GAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLG 124
           G   W   +PV  P  VPL PP+     R  SQ      +H QE +  L   LLG
Sbjct: 316 GPSSWTHWLPVETPEGVPLGPPENISATRNGSQA----FVHWQEPRAPLQGTLLG 366


>gi|21536466 AXL receptor tyrosine kinase isoform 1 [Homo sapiens]
          Length = 894

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)

Query: 70  GAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLG 124
           G   W   +PV  P  VPL PP+     R  SQ      +H QE +  L   LLG
Sbjct: 316 GPSSWTHWLPVETPEGVPLGPPENISATRNGSQA----FVHWQEPRAPLQGTLLG 366


>gi|194473700 Src homology 3 domain-containing guanine nucleotide
           exchange factor [Homo sapiens]
          Length = 871

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 26/102 (25%), Positives = 44/102 (43%), Gaps = 17/102 (16%)

Query: 96  TLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLK----YNITRYI-----------NLEK 140
           T  ++  V   R   +Q+   FLFND+L + K K    YN+  Y            N E 
Sbjct: 663 TAYVEDTVLFSRRTSKQQVYFFLFNDVLIITKKKSEESYNVNDYSLRDQLLVESCDNEEL 722

Query: 141 EKDDPKGISLKISTKDIENYAYSKTITVMDSHTENEDINISL 182
                K  S  + ++   + ++  T+TV+ +H  NE + + L
Sbjct: 723 NSSPGKNSSTMLYSRQ-SSASHLFTLTVLSNHA-NEKVEMLL 762


>gi|239758086 PREDICTED: similar to double homeobox, 4 [Homo
           sapiens]
          Length = 422

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 21  GQWRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGARLKP 62
           GQ   +  +  G G LA   +Q +PCW W       G   +P
Sbjct: 284 GQPGPAQAVPHGQGVLAPPASQWSPCWGWGRGPQVAGVAWEP 325


>gi|169171936 PREDICTED: hypothetical protein LOC286002 [Homo
          sapiens]
          Length = 159

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 54 PTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPR 95
          P +G R  P       G   WR G P P P S PL  P  P+
Sbjct: 30 PPEGRRGGPETESRASGRSSWRPGAPPPAPHSRPLGTPFPPQ 71


>gi|169171203 PREDICTED: hypothetical protein LOC286002 [Homo
          sapiens]
          Length = 159

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 54 PTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPR 95
          P +G R  P       G   WR G P P P S PL  P  P+
Sbjct: 30 PPEGRRGGPETESRASGRSSWRPGAPPPAPHSRPLGTPFPPQ 71


>gi|169170737 PREDICTED: hypothetical protein LOC286002 [Homo
          sapiens]
          Length = 159

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/42 (38%), Positives = 18/42 (42%)

Query: 54 PTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPR 95
          P +G R  P       G   WR G P P P S PL  P  P+
Sbjct: 30 PPEGRRGGPETESRASGRSSWRPGAPPPAPHSRPLGTPFPPQ 71


>gi|4758178 dynein, cytoplasmic 1, intermediate chain 1 isoform a
           [Homo sapiens]
          Length = 645

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 19/92 (20%)

Query: 92  QW---PRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAK---LKYNITRYINLEKEKDDP 145
           QW   P  L++ S  ELGR LH+           LGV+K   + +     ++  KE   P
Sbjct: 125 QWDTDPSVLQLQSDSELGRRLHK-----------LGVSKVTQVDFLPREVVSYSKETQTP 173

Query: 146 KGISLKISTKDIENYAYSKTITVMDSHTENED 177
             ++   S +D E+    ++    DS  EN+D
Sbjct: 174 --LATHQSEEDEEDEEMVESKVGQDSELENQD 203


>gi|207113122 dynein, cytoplasmic 1, intermediate chain 1 isoform b
           [Homo sapiens]
          Length = 628

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 19/92 (20%)

Query: 92  QW---PRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAK---LKYNITRYINLEKEKDDP 145
           QW   P  L++ S  ELGR LH+           LGV+K   + +     ++  KE   P
Sbjct: 108 QWDTDPSVLQLQSDSELGRRLHK-----------LGVSKVTQVDFLPREVVSYSKETQTP 156

Query: 146 KGISLKISTKDIENYAYSKTITVMDSHTENED 177
             ++   S +D E+    ++    DS  EN+D
Sbjct: 157 --LATHQSEEDEEDEEMVESKVGQDSELENQD 186


>gi|24307983 FtsJ methyltransferase domain containing 2 [Homo
           sapiens]
          Length = 835

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 16/82 (19%), Positives = 35/82 (42%), Gaps = 4/82 (4%)

Query: 150 LKISTKDIENYAYSKTITVMDSHTENEDINISLPMLRIAGPERGYKLWVNSGKEEASCLL 209
           LK+   D+ +Y ++  I +      + D+N+ +P+  I G        + S +   S  +
Sbjct: 449 LKVGIDDVRDYLFAVNIKLNQLRNTDSDVNLVVPLEVIKGDHEFTDYMIRSNESHCSLQI 508

Query: 210 TGHEDLYGIKMSHLRDTALLTP 231
                ++    + ++DT L  P
Sbjct: 509 KALAKIH----AFVQDTTLSEP 526


>gi|51477700 mediator complex subunit 15 isoform a [Homo sapiens]
          Length = 788

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 78  IPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLKYNITRYIN 137
           +P P PL+ P++P          S V    G  + EEQ +L + L  ++K    + R IN
Sbjct: 503 VPSPGPLNTPVNP----------SSVMSPAGSSQAEEQQYL-DKLKQLSKYIEPLRRMIN 551

Query: 138 -LEKEKDDPKGISLKISTKDI 157
            ++K +D  K +S   S  DI
Sbjct: 552 KIDKNEDRKKDLSKMKSLLDI 572


>gi|21312134 mediator complex subunit 15 isoform b [Homo sapiens]
          Length = 748

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 12/81 (14%)

Query: 78  IPVPRPLSVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGVAKLKYNITRYIN 137
           +P P PL+ P++P          S V    G  + EEQ +L + L  ++K    + R IN
Sbjct: 463 VPSPGPLNTPVNP----------SSVMSPAGSSQAEEQQYL-DKLKQLSKYIEPLRRMIN 511

Query: 138 -LEKEKDDPKGISLKISTKDI 157
            ++K +D  K +S   S  DI
Sbjct: 512 KIDKNEDRKKDLSKMKSLLDI 532


>gi|146134388 YLP motif containing 1 [Homo sapiens]
          Length = 2146

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 17/37 (45%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 61   KPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTL 97
            KP G  V   AP  R  +PV RP  VP+ PP  P  L
Sbjct: 1520 KPPGSIVRPSAPPARSSVPVTRP-PVPIPPPPPPPPL 1555


>gi|169208152 PREDICTED: similar to FLJ00287 protein [Homo sapiens]
          Length = 347

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 1   MEPSDQCSAQLGRTQALSYSGQWRTSSRIRSGNGCLAGAEAQRTP-------CWIWRA-- 51
           +E    C A LG    L  +G W+     RS         AQ  P        W+ RA  
Sbjct: 143 LESRSMCCAWLGSAVPLFGAG-WQLLPTARS--------PAQHPPESTSVLLNWVIRALG 193

Query: 52  --ADPTQGARLK-----PLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWP 94
               PT+G         PL  DV    PG   G P+P     PL PP +P
Sbjct: 194 PLVPPTEGGLWSDQVSWPLWEDVKTPEPG-EPGSPLPASPHPPLQPPAFP 242


>gi|146229340 mutated in colorectal cancers isoform 1 [Homo sapiens]
          Length = 1019

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 17/96 (17%)

Query: 85  SVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGV----AKLKYNITRYINLEK 140
           S+ +DP  +    R DSQ           E   L  +L+ +    A+LK  +  Y+ LEK
Sbjct: 782 SIHIDPLSYDVKPRGDSQ-------RLDLENAVLMQELMAMKEEMAELKAQL--YL-LEK 831

Query: 141 EKDDPKGISLKISTKDIENYAYSKTITVMDSHTENE 176
           EK   K + LK+ST++ +  AY   I  + S  E +
Sbjct: 832 EK---KALELKLSTREAQEQAYLVHIEHLKSEVEEQ 864


>gi|121674801 hepatocyte cell adhesion molecule [Homo sapiens]
          Length = 416

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 15/51 (29%), Positives = 20/51 (39%)

Query: 51  AADPTQGARLKPLGFDVGVGAPGWRGGIPVPRPLSVPLDPPQWPRTLRIDS 101
           A +P       P G+ V    PG   G+P+      P  P + P T R  S
Sbjct: 326 APEPRSATEPGPPGYSVSPAVPGRSPGLPIRSARRYPRSPARSPATGRTHS 376


>gi|4505129 mutated in colorectal cancers isoform 2 [Homo sapiens]
          Length = 829

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 29/96 (30%), Positives = 45/96 (46%), Gaps = 17/96 (17%)

Query: 85  SVPLDPPQWPRTLRIDSQVELGRGLHRQEEQLFLFNDLLGV----AKLKYNITRYINLEK 140
           S+ +DP  +    R DSQ           E   L  +L+ +    A+LK  +  Y+ LEK
Sbjct: 592 SIHIDPLSYDVKPRGDSQ-------RLDLENAVLMQELMAMKEEMAELKAQL--YL-LEK 641

Query: 141 EKDDPKGISLKISTKDIENYAYSKTITVMDSHTENE 176
           EK   K + LK+ST++ +  AY   I  + S  E +
Sbjct: 642 EK---KALELKLSTREAQEQAYLVHIEHLKSEVEEQ 674


>gi|13787217 FAT tumor suppressor 2 precursor [Homo sapiens]
          Length = 4349

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 113 EEQLFLFNDLLGVAKLKYNITRYINLEKEKDDPKGISLKISTKDIENYAYSKTI---TVM 169
           E + F  N   GV  LK     +INL   +  P   SLKI+  D +NYA   T+    V 
Sbjct: 606 ELEYFDLNHFSGVISLK---RPFINLTAGQ--PTSYSLKITASDGKNYASPTTLNITVVK 660

Query: 170 DSHTE 174
           D H E
Sbjct: 661 DPHFE 665


>gi|21359974 vitrin [Homo sapiens]
          Length = 693

 Score = 28.1 bits (61), Expect = 8.4
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 13/80 (16%)

Query: 3   PSDQCSAQLGRTQALSYSGQ----WRTSSRIRSGNGCLAGAEAQRTPCWIWRAADPTQGA 58
           PS   +  + R Q++ +  Q    W T++   S N   A    QR         DP+  A
Sbjct: 205 PSAASTTSIPRPQSVGHRSQEMDLWSTATYTSSQNRPRADPGIQRQ--------DPSGAA 256

Query: 59  RLKPLGFDVGVG-APGWRGG 77
             KP+G DV +G    W+ G
Sbjct: 257 FQKPVGADVSLGEMDSWKPG 276


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.136    0.423 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,750,082
Number of Sequences: 37866
Number of extensions: 596092
Number of successful extensions: 1783
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1768
Number of HSP's gapped (non-prelim): 34
length of query: 268
length of database: 18,247,518
effective HSP length: 100
effective length of query: 168
effective length of database: 14,460,918
effective search space: 2429434224
effective search space used: 2429434224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press