Search of human proteins with 119220575

Search of human proteins with 119220575

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|119220575 mediator complex subunit 24 isoform 2 [Homo
sapiens]
         (976 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|119220575 mediator complex subunit 24 isoform 2 [Homo sapiens]    1941   0.0  
gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens]     1932   0.0  
gi|195947407 excision repair cross-complementing rodent repair d...    33   1.3  
gi|11072101 rhomboid domain containing 3 [Homo sapiens]                33   1.3  
gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo s...    33   1.7  
gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo s...    33   1.7  
gi|240255542 alpha 3 type VI collagen isoform 2 precursor [Homo ...    33   1.7  
gi|240255540 alpha 3 type VI collagen isoform 3 precursor [Homo ...    33   1.7  
gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo ...    33   1.7  
gi|4758118 death-associated protein 3 [Homo sapiens]                   32   2.2  
gi|16905526 death-associated protein 3 [Homo sapiens]                  32   2.2  
gi|148664197 coiled-coil domain containing 40 [Homo sapiens]           32   2.9  
gi|29171750 peroxisome proliferative activated receptor, delta i...    31   5.0  
gi|5453940 peroxisome proliferative activated receptor, delta is...    31   5.0  
gi|4502443 dystonin isoform 1e precursor [Homo sapiens]                31   6.5  
gi|16506820 glycosyltransferase 25 domain containing 2 [Homo sap...    31   6.5  
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]             31   6.5  
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]             31   6.5  
gi|75750480 ras homolog gene family, member T1 isoform 1 [Homo s...    30   8.4  
gi|75750476 ras homolog gene family, member T1 isoform 2 [Homo s...    30   8.4  
gi|75750470 ras homolog gene family, member T1 isoform 3 [Homo s...    30   8.4  
gi|221316624 dystonin isoform 4 [Homo sapiens]                         30   8.4  
gi|221316622 dystonin isoform 3 [Homo sapiens]                         30   8.4  
gi|221316618 dystonin isoform 2 [Homo sapiens]                         30   8.4  
gi|34577047 dystonin isoform 1 [Homo sapiens]                          30   8.4  
gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]              30   8.4  
gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]              30   8.4  
gi|193083131 MAP/microtubule affinity-regulating kinase 3 isofor...    30   8.4  
gi|193083127 MAP/microtubule affinity-regulating kinase 3 isofor...    30   8.4  
gi|193083125 MAP/microtubule affinity-regulating kinase 3 isofor...    30   8.4  

>gi|119220575 mediator complex subunit 24 isoform 2 [Homo sapiens]
          Length = 976

 Score = 1941 bits (5028), Expect = 0.0
 Identities = 976/976 (100%), Positives = 976/976 (100%)

Query: 1   MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI 60
           MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
Sbjct: 1   MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI 60

Query: 61  LSYLKYAISSQFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLR 120
           LSYLKYAISSQFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLR
Sbjct: 61  LSYLKYAISSQFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHWLLR 120

Query: 121 CTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIE 180
           CTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIE
Sbjct: 121 CTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHIAKLEEASSWTAIE 180

Query: 181 HSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVHAVILLEGT 240
           HSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVHAVILLEGT
Sbjct: 181 HSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVHAVILLEGT 240

Query: 241 MNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKI 300
           MNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKI
Sbjct: 241 MNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGTEELKWTAFTFLKI 300

Query: 301 PQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTNFLLQECGKQGLL 360
           PQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTNFLLQECGKQGLL
Sbjct: 301 PQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTNFLLQECGKQGLL 360

Query: 361 SEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNILKTMDADHSKSPE 420
           SEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNILKTMDADHSKSPE
Sbjct: 361 SEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNILKTMDADHSKSPE 420

Query: 421 GLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSEESTKPASVRALLF 480
           GLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSEESTKPASVRALLF
Sbjct: 421 GLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSEESTKPASVRALLF 480

Query: 481 DISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTK 540
           DISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTK
Sbjct: 481 DISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKILNPDHPCFRPDSTK 540

Query: 541 VESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKV 600
           VESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKV
Sbjct: 541 VESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKV 600

Query: 601 CSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYNERVVIMNSILERM 660
           CSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYNERVVIMNSILERM
Sbjct: 601 CSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYNERVVIMNSILERM 660

Query: 661 CADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFD 720
           CADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFD
Sbjct: 661 CADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLEKGWVDSRSIHIFD 720

Query: 721 TLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLT 780
           TLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLT
Sbjct: 721 TLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVTLVLLGHILPGLLT 780

Query: 781 DSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDIEDYISLFPLDDVQ 840
           DSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDIEDYISLFPLDDVQ
Sbjct: 781 DSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDIEDYISLFPLDDVQ 840

Query: 841 PSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILG 900
           PSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILG
Sbjct: 841 PSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRVLANLFLLISSILG 900

Query: 901 SRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSAMSSPKVVLAITDL 960
           SRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSAMSSPKVVLAITDL
Sbjct: 901 SRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSAMSSPKVVLAITDL 960

Query: 961 SLPLGRQVAAKAIAAL 976
           SLPLGRQVAAKAIAAL
Sbjct: 961 SLPLGRQVAAKAIAAL 976


>gi|41281496 mediator complex subunit 24 isoform 1 [Homo sapiens]
          Length = 989

 Score = 1932 bits (5004), Expect = 0.0
 Identities = 976/989 (98%), Positives = 976/989 (98%), Gaps = 13/989 (1%)

Query: 1   MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI 60
           MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI
Sbjct: 1   MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI 60

Query: 61  LSYLKYAISSQ-------------FDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL 107
           LSYLKYAISSQ             FDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL
Sbjct: 61  LSYLKYAISSQMVSYSSVLTAISKFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGL 120

Query: 108 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI 167
           CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI
Sbjct: 121 CRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLAMCLQRLEKTLSSTKNRALLHI 180

Query: 168 AKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTG 227
           AKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTG
Sbjct: 181 AKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTG 240

Query: 228 FPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGT 287
           FPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGT
Sbjct: 241 FPTVHAVILLEGTMNLTGETQSLVEQLTMVKRMQHIPTPLFVLEIWKACFVGLIESPEGT 300

Query: 288 EELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCT 347
           EELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCT
Sbjct: 301 EELKWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCT 360

Query: 348 NFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNI 407
           NFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNI
Sbjct: 361 NFLLQECGKQGLLSEASVNNLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNI 420

Query: 408 LKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSE 467
           LKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSE
Sbjct: 421 LKTMDADHSKSPEGLLGVLGHMLSGKSLDLLLAAAAATGKLKSFARKFINLNEFTTYGSE 480

Query: 468 ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL 527
           ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL
Sbjct: 481 ESTKPASVRALLFDISFLMLCHVAQTYGSEVILSESRTGAEVPFFETWMQTCMPEEGKIL 540

Query: 528 NPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFE 587
           NPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFE
Sbjct: 541 NPDHPCFRPDSTKVESLVALLNNSSEMKLVQMKWHEACLSISAAILEILNAWENGVLAFE 600

Query: 588 SIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYN 647
           SIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYN
Sbjct: 601 SIQKITDNIKGKVCSLAVCAVAWLVAHVRMLGLDEREKSLQMIRQLAGPLFSENTLQFYN 660

Query: 648 ERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLE 707
           ERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLE
Sbjct: 661 ERVVIMNSILERMCADVLQQTATQIKFPSTGVDTMPYWNLLPPKRPIKEVLTDIFAKVLE 720

Query: 708 KGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVT 767
           KGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVT
Sbjct: 721 KGWVDSRSIHIFDTLLHMGGVYWFCNNLIKELLKETRKEHTLRAVELLYSIFCLDMQQVT 780

Query: 768 LVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDI 827
           LVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDI
Sbjct: 781 LVLLGHILPGLLTDSSKWHSLMDPPGTALAKLAVWCALSSYSSHKGQASTRQKKRHREDI 840

Query: 828 EDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRV 887
           EDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRV
Sbjct: 841 EDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDPLNRV 900

Query: 888 LANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSA 947
           LANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSA
Sbjct: 901 LANLFLLISSILGSRTAGPHTQFVQWFMEECVDCLEQGGRGSVLQFMPFTTVSELVKVSA 960

Query: 948 MSSPKVVLAITDLSLPLGRQVAAKAIAAL 976
           MSSPKVVLAITDLSLPLGRQVAAKAIAAL
Sbjct: 961 MSSPKVVLAITDLSLPLGRQVAAKAIAAL 989


>gi|195947407 excision repair cross-complementing rodent repair
           deficiency, complementation group 2 protein isoform 2
           [Homo sapiens]
          Length = 405

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 16/109 (14%)

Query: 101 AEECIGLCRALLSALHWLLRCTAASAERLREGLEAGTPAAGEKQLA--MCLQRLEKTLSS 158
           AE  +G  R LL  + W LR      E         +P A    LA  +C+QR      +
Sbjct: 302 AEHFLGFLRRLLEYVKWRLRVQHVVQE---------SPPAFLSGLAQRVCIQRKPLRFCA 352

Query: 159 TKNRALLHIAKLEEASSWTAIEHSLLKLGEILANLSNPQLRSQAEQCGT 207
            + R+LLH  ++ + +     + S L L    A L +   + QA+ CG+
Sbjct: 353 ERLRSLLHTLEITDLA-----DFSPLTLLANFATLVSTYAKGQAQHCGS 396


>gi|11072101 rhomboid domain containing 3 [Homo sapiens]
          Length = 386

 Score = 33.1 bits (74), Expect = 1.3
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 4/76 (5%)

Query: 176 WTAIEHSLLKLGEILANLSNPQLRSQAEQCGTLIRSIPTMLSVHAEQMHKTGFPTVHAVI 235
           W A++  +L+ G   + L  P    Q+        S  ++ S+  +Q+ + GFPT  AV+
Sbjct: 289 WAALDEQMLQEGIQASLLDGPAQEPQSAPW----LSKSSVSSLRLQQLERMGFPTEQAVV 344

Query: 236 LLEGTMNLTGETQSLV 251
            L  T  + G    LV
Sbjct: 345 ALAATGRVEGAVSLLV 360


>gi|55743106 alpha 3 type VI collagen isoform 5 precursor [Homo
            sapiens]
          Length = 2971

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 900  GSRTAGPHTQFVQWFMEECVDCLEQG---GRGSVLQFMPFTTVSELVKVSAMSSPKVVLA 956
            GS++AGP  Q+V+  +E  VD L+ G    R +V+QF     V  L+   + S  +V  A
Sbjct: 1034 GSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHS-SKDEVQNA 1092

Query: 957  ITDLSLPLGRQV 968
            +  L    GRQ+
Sbjct: 1093 VQRLRPKGGRQI 1104


>gi|55743098 alpha 3 type VI collagen isoform 1 precursor [Homo
            sapiens]
          Length = 3177

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 900  GSRTAGPHTQFVQWFMEECVDCLEQG---GRGSVLQFMPFTTVSELVKVSAMSSPKVVLA 956
            GS++AGP  Q+V+  +E  VD L+ G    R +V+QF     V  L+   + S  +V  A
Sbjct: 1240 GSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHS-SKDEVQNA 1298

Query: 957  ITDLSLPLGRQV 968
            +  L    GRQ+
Sbjct: 1299 VQRLRPKGGRQI 1310


>gi|240255542 alpha 3 type VI collagen isoform 2 precursor [Homo
           sapiens]
          Length = 1036

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 900 GSRTAGPHTQFVQWFMEECVDCLEQG---GRGSVLQFMPFTTVSELVKVSAMSSPKVVLA 956
           GS++AGP  Q+V+  +E  VD L+ G    R +V+QF     V  L+   + S  +V  A
Sbjct: 833 GSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHS-SKDEVQNA 891

Query: 957 ITDLSLPLGRQV 968
           +  L    GRQ+
Sbjct: 892 VQRLRPKGGRQI 903


>gi|240255540 alpha 3 type VI collagen isoform 3 precursor [Homo
            sapiens]
          Length = 1237

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 900  GSRTAGPHTQFVQWFMEECVDCLEQG---GRGSVLQFMPFTTVSELVKVSAMSSPKVVLA 956
            GS++AGP  Q+V+  +E  VD L+ G    R +V+QF     V  L+   + S  +V  A
Sbjct: 1034 GSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHS-SKDEVQNA 1092

Query: 957  ITDLSLPLGRQV 968
            +  L    GRQ+
Sbjct: 1093 VQRLRPKGGRQI 1104


>gi|240255535 alpha 3 type VI collagen isoform 4 precursor [Homo
           sapiens]
          Length = 2570

 Score = 32.7 bits (73), Expect = 1.7
 Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 4/72 (5%)

Query: 900 GSRTAGPHTQFVQWFMEECVDCLEQG---GRGSVLQFMPFTTVSELVKVSAMSSPKVVLA 956
           GS++AGP  Q+V+  +E  VD L+ G    R +V+QF     V  L+   + S  +V  A
Sbjct: 633 GSQSAGPEFQYVRTLIERLVDYLDVGFDTTRVAVIQFSDDPKVEFLLNAHS-SKDEVQNA 691

Query: 957 ITDLSLPLGRQV 968
           +  L    GRQ+
Sbjct: 692 VQRLRPKGGRQI 703


>gi|4758118 death-associated protein 3 [Homo sapiens]
          Length = 398

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 556 LVQMK-WHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVA----- 609
           ++Q+K + EACL +    LE+L+  +N   A+ +I+ +    KG   +L++C V      
Sbjct: 88  VMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKTLSLCHVIHFCAK 147

Query: 610 --WLVAHV 615
             WL+ H+
Sbjct: 148 QDWLILHI 155


>gi|16905526 death-associated protein 3 [Homo sapiens]
          Length = 398

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 20/68 (29%), Positives = 37/68 (54%), Gaps = 8/68 (11%)

Query: 556 LVQMK-WHEACLSISAAILEILNAWENGVLAFESIQKITDNIKGKVCSLAVCAVA----- 609
           ++Q+K + EACL +    LE+L+  +N   A+ +I+ +    KG   +L++C V      
Sbjct: 88  VMQVKTFSEACLMVRKPALELLHYLKNTSFAYPAIRYLLYGEKGTGKTLSLCHVIHFCAK 147

Query: 610 --WLVAHV 615
             WL+ H+
Sbjct: 148 QDWLILHI 155


>gi|148664197 coiled-coil domain containing 40 [Homo sapiens]
          Length = 1142

 Score = 32.0 bits (71), Expect = 2.9
 Identities = 18/86 (20%), Positives = 43/86 (50%)

Query: 814 QASTRQKKRHREDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSAS 873
           ++   Q+K+ +++IE ++     D  + + LM     + ++    +  T+     SL AS
Sbjct: 816 ESKIEQEKKEQKEIEHHMKDLDNDLKKLNMLMNKNRCSSEELEQNNRVTENEFVRSLKAS 875

Query: 874 QLHTVNMRDPLNRVLANLFLLISSIL 899
           +  T+ M+D LN++      L++ ++
Sbjct: 876 ERETIKMQDKLNQLSEEKATLLNQLV 901


>gi|29171750 peroxisome proliferative activated receptor, delta
           isoform 2 [Homo sapiens]
          Length = 361

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 69  SSQFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHW 117
           SS + D SR     +LLD + M CD  SC     EC  +C    S  H+
Sbjct: 39  SSSYTDLSRSSSPPSLLDQLQMGCDGASCGSLNMEC-RVCGDKASGFHY 86


>gi|5453940 peroxisome proliferative activated receptor, delta
           isoform 1 [Homo sapiens]
          Length = 441

 Score = 31.2 bits (69), Expect = 5.0
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 69  SSQFDDFSRDLCVQALLDIMDMFCDRLSCHGKAEECIGLCRALLSALHW 117
           SS + D SR     +LLD + M CD  SC     EC  +C    S  H+
Sbjct: 39  SSSYTDLSRSSSPPSLLDQLQMGCDGASCGSLNMEC-RVCGDKASGFHY 86


>gi|4502443 dystonin isoform 1e precursor [Homo sapiens]
          Length = 2649

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 18/115 (15%)

Query: 307  LKKYSHGDKDFTEDVNCAFEFLLKLTPLLDKADQRCNCDCTNFLLQECGKQGLLSEASVN 366
            L K +  ++DF   + C  E L K   L+ +  Q+  CD  N ++Q   K+       V 
Sbjct: 1632 LHKQTKTEQDFQRKIKCLEEDLAKSQNLVSEFKQK--CDQQNIIIQNTKKE-------VR 1682

Query: 367  NLMAKRKADREHAPQQKSGENANIQPNIQLILRAEPTVTNIL-KTMDADHSKSPE 420
            NL A+  A +E   +++ GE       +QL       + N L K  D  H K+ E
Sbjct: 1683 NLNAELNASKE---EKRRGEQ-----KVQLQQAQVQELNNRLKKVQDELHLKTIE 1729


>gi|16506820 glycosyltransferase 25 domain containing 2 [Homo
           sapiens]
          Length = 626

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)

Query: 3   VVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDIL 40
           V+ L+QA L+  +E+WSDY   I++  F     T ++L
Sbjct: 144 VMKLRQAALRTAREKWSDYILFIDVDNFLTNPQTLNLL 181


>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
          Length = 338

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 807 SYSSHKGQASTRQKKRHREDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSM 866
           S S  +G+ S ++KK+ R+D     S     +    K  R   S+   ++  SS +  S 
Sbjct: 135 SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSS 194

Query: 867 SSSLSAS 873
           SSS S+S
Sbjct: 195 SSSSSSS 201


>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
          Length = 341

 Score = 30.8 bits (68), Expect = 6.5
 Identities = 20/67 (29%), Positives = 32/67 (47%)

Query: 807 SYSSHKGQASTRQKKRHREDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSM 866
           S S  +G+ S ++KK+ R+D     S     +    K  R   S+   ++  SS +  S 
Sbjct: 135 SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSS 194

Query: 867 SSSLSAS 873
           SSS S+S
Sbjct: 195 SSSSSSS 201


>gi|75750480 ras homolog gene family, member T1 isoform 1 [Homo
           sapiens]
          Length = 691

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 291 KWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLL---KLTPLLDKADQRCNCDCT 347
           +WT  T+L + + L  L     G    TE  + A    +   K   L  K  QR    C 
Sbjct: 365 QWTLTTYLDVQRCLEYLGYL--GYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCN 422

Query: 348 NFLLQECGKQGLLSEASVNNLMAKRKADREH 378
              ++ CGK G+L      NLM ++K   +H
Sbjct: 423 VIGVKNCGKSGVLQALLGRNLMRQKKIREDH 453


>gi|75750476 ras homolog gene family, member T1 isoform 2 [Homo
           sapiens]
          Length = 659

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 291 KWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLL---KLTPLLDKADQRCNCDCT 347
           +WT  T+L + + L  L     G    TE  + A    +   K   L  K  QR    C 
Sbjct: 365 QWTLTTYLDVQRCLEYLGYL--GYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCN 422

Query: 348 NFLLQECGKQGLLSEASVNNLMAKRKADREH 378
              ++ CGK G+L      NLM ++K   +H
Sbjct: 423 VIGVKNCGKSGVLQALLGRNLMRQKKIREDH 453


>gi|75750470 ras homolog gene family, member T1 isoform 3 [Homo
           sapiens]
          Length = 618

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 291 KWTAFTFLKIPQVLVKLKKYSHGDKDFTEDVNCAFEFLL---KLTPLLDKADQRCNCDCT 347
           +WT  T+L + + L  L     G    TE  + A    +   K   L  K  QR    C 
Sbjct: 365 QWTLTTYLDVQRCLEYLGYL--GYSILTEQESQASAVTVTRDKKIDLQKKQTQRNVFRCN 422

Query: 348 NFLLQECGKQGLLSEASVNNLMAKRKADREH 378
              ++ CGK G+L      NLM ++K   +H
Sbjct: 423 VIGVKNCGKSGVLQALLGRNLMRQKKIREDH 453


>gi|221316624 dystonin isoform 4 [Homo sapiens]
          Length = 5526

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 149  LQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILA-------NLSNPQLRSQ 201
            L+RLE+   S +     H+ K +E   W +     LK  E           +S+ ++ ++
Sbjct: 1454 LKRLEEEEKSLEEEKKEHVEKAKELQKWVSNISKTLKDAEKAGKPPFSKQKISSEEISTK 1513

Query: 202  AEQCGTLIRSIPTMLSVHAEQM 223
             EQ    +++I   L+ H ++M
Sbjct: 1514 KEQLSEALQTIQLFLAKHGDKM 1535


>gi|221316622 dystonin isoform 3 [Homo sapiens]
          Length = 5537

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 149  LQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILA-------NLSNPQLRSQ 201
            L+RLE+   S +     H+ K +E   W +     LK  E           +S+ ++ ++
Sbjct: 1465 LKRLEEEEKSLEEEKKEHVEKAKELQKWVSNISKTLKDAEKAGKPPFSKQKISSEEISTK 1524

Query: 202  AEQCGTLIRSIPTMLSVHAEQM 223
             EQ    +++I   L+ H ++M
Sbjct: 1525 KEQLSEALQTIQLFLAKHGDKM 1546


>gi|221316618 dystonin isoform 2 [Homo sapiens]
          Length = 5675

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 149  LQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILA-------NLSNPQLRSQ 201
            L+RLE+   S +     H+ K +E   W +     LK  E           +S+ ++ ++
Sbjct: 1603 LKRLEEEEKSLEEEKKEHVEKAKELQKWVSNISKTLKDAEKAGKPPFSKQKISSEEISTK 1662

Query: 202  AEQCGTLIRSIPTMLSVHAEQM 223
             EQ    +++I   L+ H ++M
Sbjct: 1663 KEQLSEALQTIQLFLAKHGDKM 1684


>gi|34577047 dystonin isoform 1 [Homo sapiens]
          Length = 5497

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 149  LQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILA-------NLSNPQLRSQ 201
            L+RLE+   S +     H+ K +E   W +     LK  E           +S+ ++ ++
Sbjct: 1425 LKRLEEEEKSLEEEKKEHVEKAKELQKWVSNISKTLKDAEKAGKPPFSKQKISSEEISTK 1484

Query: 202  AEQCGTLIRSIPTMLSVHAEQM 223
             EQ    +++I   L+ H ++M
Sbjct: 1485 KEQLSEALQTIQLFLAKHGDKM 1506


>gi|20357504 dystonin isoform 1eB precursor [Homo sapiens]
          Length = 3062

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 149  LQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILA-------NLSNPQLRSQ 201
            L+RLE+   S +     H+ K +E   W +     LK  E           +S+ ++ ++
Sbjct: 1099 LKRLEEEEKSLEEEKKEHVEKAKELQKWVSNISKTLKDAEKAGKPPFSKQKISSEEISTK 1158

Query: 202  AEQCGTLIRSIPTMLSVHAEQM 223
             EQ    +++I   L+ H ++M
Sbjct: 1159 KEQLSEALQTIQLFLAKHGDKM 1180


>gi|34577049 dystonin isoform 1eA precursor [Homo sapiens]
          Length = 5171

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 149  LQRLEKTLSSTKNRALLHIAKLEEASSWTAIEHSLLKLGEILA-------NLSNPQLRSQ 201
            L+RLE+   S +     H+ K +E   W +     LK  E           +S+ ++ ++
Sbjct: 1099 LKRLEEEEKSLEEEKKEHVEKAKELQKWVSNISKTLKDAEKAGKPPFSKQKISSEEISTK 1158

Query: 202  AEQCGTLIRSIPTMLSVHAEQM 223
             EQ    +++I   L+ H ++M
Sbjct: 1159 KEQLSEALQTIQLFLAKHGDKM 1180


>gi|193083131 MAP/microtubule affinity-regulating kinase 3 isoform e
           [Homo sapiens]
          Length = 659

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 21/83 (25%), Positives = 43/83 (51%)

Query: 824 REDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDP 883
           +E+I++ +S    D++  + L+    S+E DA+  SS ++ S++    +S L+    + P
Sbjct: 263 QEEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSDLNNSTGQSP 322

Query: 884 LNRVLANLFLLISSILGSRTAGP 906
            ++V  ++F        S  AGP
Sbjct: 323 HHKVQRSVFSSQKQRRYSDHAGP 345


>gi|193083127 MAP/microtubule affinity-regulating kinase 3 isoform b
           [Homo sapiens]
          Length = 744

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 21/83 (25%), Positives = 43/83 (51%)

Query: 824 REDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDP 883
           +E+I++ +S    D++  + L+    S+E DA+  SS ++ S++    +S L+    + P
Sbjct: 342 QEEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSDLNNSTGQSP 401

Query: 884 LNRVLANLFLLISSILGSRTAGP 906
            ++V  ++F        S  AGP
Sbjct: 402 HHKVQRSVFSSQKQRRYSDHAGP 424


>gi|193083125 MAP/microtubule affinity-regulating kinase 3 isoform a
           [Homo sapiens]
          Length = 753

 Score = 30.4 bits (67), Expect = 8.4
 Identities = 21/83 (25%), Positives = 43/83 (51%)

Query: 824 REDIEDYISLFPLDDVQPSKLMRLLSSNEDDANILSSPTDRSMSSSLSASQLHTVNMRDP 883
           +E+I++ +S    D++  + L+    S+E DA+  SS ++ S++    +S L+    + P
Sbjct: 342 QEEIQESLSKMKYDEITATYLLLGRKSSELDASDSSSSSNLSLAKVRPSSDLNNSTGQSP 401

Query: 884 LNRVLANLFLLISSILGSRTAGP 906
            ++V  ++F        S  AGP
Sbjct: 402 HHKVQRSVFSSQKQRRYSDHAGP 424


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,404,881
Number of Sequences: 37866
Number of extensions: 1502607
Number of successful extensions: 3593
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3576
Number of HSP's gapped (non-prelim): 40
length of query: 976
length of database: 18,247,518
effective HSP length: 112
effective length of query: 864
effective length of database: 14,006,526
effective search space: 12101638464
effective search space used: 12101638464
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 67 (30.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.