Guide to the Human Genome
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Name: LOC100293189 Sequence: fasta or formatted (140aa) NCBI GI: 239753870
Description:

PREDICTED: hypothetical protein

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            10.7         15           2
 C cysteine            2.1          3           1
 D aspartate           2.9          4           1
 E glutamate           3.6          5           1
 F phenylalanine       1.4          2           1
 G glycine            12.9         18           3
 H histidine           2.9          4           1
 I isoleucine          0.7          1           1
 K lysine              5.7          8           1
 L leucine             7.1         10           1
 M methionine          0.7          1           1
 N asparagine          0.7          1           1
 P proline            12.1         17           2
 Q glutamine           0.7          1           1
 R arginine           13.6         19           4
 S serine              6.4          9           1
 T threonine           5.7          8           1
 V valine              5.7          8           2
 W tryptophan          2.9          4           1
 Y tyrosine            1.4          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein 
LOC100291266          1.000   PREDICTED: hypothetical protein XP_002346666 
LOC100288943          1.000   PREDICTED: hypothetical protein XP_002342523 
FHDC1                 0.029   FH2 domain containing 1 
AHDC1                 0.029   AT hook, DNA binding motif, containing 1 
APEH                  0.025   N-acylaminoacyl-peptide hydrolase 
RASSF5                0.022   Ras association (RalGDS/AF-6) domain family 5 isofor...
RASSF5                0.022   Ras association (RalGDS/AF-6) domain family 5 isofor...
LOC729580             0.022   PREDICTED: hypothetical protein 
LOC729580             0.022   PREDICTED: hypothetical protein 
LOC729580             0.022   PREDICTED: hypothetical protein 
TRIO                  0.018   triple functional domain (PTPRF interacting) 
ACIN1                 0.018   apoptotic chromatin condensation inducer 1 
BZRAP1                0.018   peripheral benzodiazepine receptor-associated prote...
BZRAP1                0.018   peripheral benzodiazepine receptor-associated prote...
BAHD1                 0.018   bromo adjacent homology domain containing 1 
MEPCE                 0.018   bin3, bicoid-interacting 3 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
LOC100130128          0.015   PREDICTED: hypothetical protein 
SRRM2                 0.015   splicing coactivator subunit SRm300 
LOC100293466          0.015   PREDICTED: hypothetical protein 
LOC100291878          0.015   PREDICTED: similar to RIKEN cDNA C230030N03 
LOC100287213          0.015   PREDICTED: hypothetical protein 
LOC100287213          0.015   PREDICTED: hypothetical protein XP_002343128 
OBSL1                 0.011   obscurin-like 1 
LOC729590             0.011   PREDICTED: hypothetical protein 
LOC728767             0.011   PREDICTED: hypothetical protein 
LOC729590             0.011   PREDICTED: hypothetical protein 
LOC728767             0.011   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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