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Search of human proteins with 239753738
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753738 PREDICTED: hypothetical protein [Homo sapiens]
(293 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753738 PREDICTED: hypothetical protein [Homo sapiens] 609 e-174
gi|239753493 PREDICTED: hypothetical protein [Homo sapiens] 43 4e-04
gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo ... 43 4e-04
gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo ... 43 4e-04
gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens] 40 0.003
gi|169173306 PREDICTED: hypothetical protein [Homo sapiens] 37 0.016
gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo s... 37 0.021
gi|146219843 Snf2-related CBP activator protein [Homo sapiens] 37 0.027
gi|150170699 kinesin family member 26A [Homo sapiens] 37 0.027
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 37 0.027
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 37 0.027
gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo ... 36 0.046
gi|169166892 PREDICTED: hypothetical protein [Homo sapiens] 36 0.046
gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo ... 36 0.046
gi|169166322 PREDICTED: hypothetical protein [Homo sapiens] 36 0.046
gi|239508959 PREDICTED: hypothetical protein [Homo sapiens] 36 0.046
gi|169171690 PREDICTED: hypothetical protein [Homo sapiens] 35 0.078
gi|169171083 PREDICTED: hypothetical protein [Homo sapiens] 35 0.078
gi|148839382 ring finger protein 169 [Homo sapiens] 35 0.078
gi|169171833 PREDICTED: hypothetical protein [Homo sapiens] 35 0.10
gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo ... 35 0.10
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 35 0.10
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|22547204 hairless protein isoform a [Homo sapiens] 34 0.13
gi|22547207 hairless protein isoform b [Homo sapiens] 34 0.13
gi|23943900 transmembrane channel-like 8 [Homo sapiens] 34 0.13
gi|194272140 dendrin [Homo sapiens] 34 0.17
gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo... 34 0.17
>gi|239753738 PREDICTED: hypothetical protein [Homo sapiens]
Length = 293
Score = 609 bits (1570), Expect = e-174
Identities = 293/293 (100%), Positives = 293/293 (100%)
Query: 1 MLALPSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAA 60
MLALPSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAA
Sbjct: 1 MLALPSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAA 60
Query: 61 KRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRE 120
KRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRE
Sbjct: 61 KRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRE 120
Query: 121 RGAAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAP 180
RGAAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAP
Sbjct: 121 RGAAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAP 180
Query: 181 LAYALGGRLFEAIACLPGLRSPLQVGTEAVSVHFHPLFALKSRKSIPSCLNMCPASENRG 240
LAYALGGRLFEAIACLPGLRSPLQVGTEAVSVHFHPLFALKSRKSIPSCLNMCPASENRG
Sbjct: 181 LAYALGGRLFEAIACLPGLRSPLQVGTEAVSVHFHPLFALKSRKSIPSCLNMCPASENRG 240
Query: 241 PEKSSGIPESTRHFTDKVSEGRVLTLHSWFFYPSAYAPVPSGMNIASWKQTGH 293
PEKSSGIPESTRHFTDKVSEGRVLTLHSWFFYPSAYAPVPSGMNIASWKQTGH
Sbjct: 241 PEKSSGIPESTRHFTDKVSEGRVLTLHSWFFYPSAYAPVPSGMNIASWKQTGH 293
>gi|239753493 PREDICTED: hypothetical protein [Homo sapiens]
Length = 254
Score = 42.7 bits (99), Expect = 4e-04
Identities = 57/185 (30%), Positives = 72/185 (38%), Gaps = 28/185 (15%)
Query: 13 GGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPK--RLLCPL---GVAAKRGCVEF 67
GG+ R R P + + A P P P P+ RL P GVAA+ G
Sbjct: 33 GGKERPARPPPASSHESHVLDNAPAAAREPPPPAPAPRCLRLRPPFPEEGVAARPGSCPV 92
Query: 68 GAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRA---CPRLGKSRRA----PSGVLRRE 120
G G+R +L G G L + V L + P LG+ R A P G +R
Sbjct: 93 GWGAR-------KLEGTGVLGEGEKLVTWANLPQGNEELPALGRDRGAGRMSPHG--KRA 143
Query: 121 RGAAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAP 180
G A LRL PPS TP+ R R EL+ + P GGR G A P
Sbjct: 144 DGQAQGQLRL--PPS---TPRAPDRGGCEPRAPRS--QELRSWAQPAGGRAPGCAAPWVP 196
Query: 181 LAYAL 185
+ L
Sbjct: 197 QCHPL 201
>gi|239748056 PREDICTED: hypothetical protein XP_002346522 [Homo
sapiens]
Length = 254
Score = 42.7 bits (99), Expect = 4e-04
Identities = 57/185 (30%), Positives = 72/185 (38%), Gaps = 28/185 (15%)
Query: 13 GGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPK--RLLCPL---GVAAKRGCVEF 67
GG+ R R P + + A P P P P+ RL P GVAA+ G
Sbjct: 33 GGKERPARPPPASSHESHVLDNAPAAAREPPPPAPAPRCLRLRPPFPEEGVAARPGSCPV 92
Query: 68 GAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRA---CPRLGKSRRA----PSGVLRRE 120
G G+R +L G G L + V L + P LG+ R A P G +R
Sbjct: 93 GWGAR-------KLEGTGVLGEGEKLVTWANLPQGNEELPALGRDRGAGRMSPHG--KRA 143
Query: 121 RGAAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAP 180
G A LRL PPS TP+ R R EL+ + P GGR G A P
Sbjct: 144 DGQAQGQLRL--PPS---TPRAPDRGGCEPRAPRS--QELRSWAQPAGGRAPGCAAPWVP 196
Query: 181 LAYAL 185
+ L
Sbjct: 197 QCHPL 201
>gi|239741949 PREDICTED: hypothetical protein XP_002342360 [Homo
sapiens]
Length = 254
Score = 42.7 bits (99), Expect = 4e-04
Identities = 57/185 (30%), Positives = 72/185 (38%), Gaps = 28/185 (15%)
Query: 13 GGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPK--RLLCPL---GVAAKRGCVEF 67
GG+ R R P + + A P P P P+ RL P GVAA+ G
Sbjct: 33 GGKERPARPPPASSHESHVLDNAPAAAREPPPPAPAPRCLRLRPPFPEEGVAARPGSCPV 92
Query: 68 GAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRA---CPRLGKSRRA----PSGVLRRE 120
G G+R +L G G L + V L + P LG+ R A P G +R
Sbjct: 93 GWGAR-------KLEGTGVLGEGEKLVTWANLPQGNEELPALGRDRGAGRMSPHG--KRA 143
Query: 121 RGAAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAP 180
G A LRL PPS TP+ R R EL+ + P GGR G A P
Sbjct: 144 DGQAQGQLRL--PPS---TPRAPDRGGCEPRAPRS--QELRSWAQPAGGRAPGCAAPWVP 196
Query: 181 LAYAL 185
+ L
Sbjct: 197 QCHPL 201
>gi|239754042 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 39.7 bits (91), Expect = 0.003
Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 4 LPSPCPGSPGGQHREMRAPRPFRR---RAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAA 60
LP+P P GG+ R + R + R P V K G P+P P P CP G A
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAP-PGTRCCP-GARA 184
Query: 61 KRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRR------RLTRACPRLGKSRRAP 113
+ E A ++ A A RLP P R+ P R A L +SRRAP
Sbjct: 185 AQLLREAAAAAQGLRAPAARLPEP------TRRAPGRPGCLPTAAAAAADALWRSRRAP 237
>gi|239748572 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 39.7 bits (91), Expect = 0.003
Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 4 LPSPCPGSPGGQHREMRAPRPFRR---RAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAA 60
LP+P P GG+ R + R + R P V K G P+P P P CP G A
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAP-PGTRCCP-GARA 184
Query: 61 KRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRR------RLTRACPRLGKSRRAP 113
+ E A ++ A A RLP P R+ P R A L +SRRAP
Sbjct: 185 AQLLREAAAAAQGLRAPAARLPEP------TRRAPGRPGCLPTAAAAAADALWRSRRAP 237
>gi|169167670 PREDICTED: similar to hCG1646049 [Homo sapiens]
Length = 346
Score = 39.7 bits (91), Expect = 0.003
Identities = 39/119 (32%), Positives = 49/119 (41%), Gaps = 17/119 (14%)
Query: 4 LPSPCPGSPGGQHREMRAPRPFRR---RAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAA 60
LP+P P GG+ R + R + R P V K G P+P P P CP G A
Sbjct: 127 LPAPRPKRFGGKQRPLWRIRGWETTVARLPEPRVGKLGKGPPPRPAP-PGTRCCP-GARA 184
Query: 61 KRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRR------RLTRACPRLGKSRRAP 113
+ E A ++ A A RLP P R+ P R A L +SRRAP
Sbjct: 185 AQLLREAAAAAQGLRAPAARLPEP------TRRAPGRPGCLPTAAAAAADALWRSRRAP 237
>gi|169173306 PREDICTED: hypothetical protein [Homo sapiens]
Length = 281
Score = 37.4 bits (85), Expect = 0.016
Identities = 39/145 (26%), Positives = 54/145 (37%), Gaps = 11/145 (7%)
Query: 7 PCPGSPGGQHREMRA---------PRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLG 57
P PG P + RA P P P + AG RP GP P+R L L
Sbjct: 41 PAPGFPALRLPRRRAQLGVKLGGGPSPASGARPSPHLEGAGCETRPWLGPRPRRRLA-LH 99
Query: 58 VAAKRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVL 117
+ G + G + +Q + R PG L +V V R R P L ++ + +G
Sbjct: 100 LQVPEGARQLGPRTGAQPSRHRRQRAPG-LALVVTGVSRIRPAHGAPGLPRAPKPSAGRG 158
Query: 118 RRERGAAARTLRLRSPPSAAPTPQP 142
+E G + R S P P
Sbjct: 159 GKEGGERGTEMLRRLRGSPRPNRHP 183
Score = 33.9 bits (76), Expect = 0.17
Identities = 40/151 (26%), Positives = 51/151 (33%), Gaps = 13/151 (8%)
Query: 3 ALPSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKR---------LL 53
A PSP G + R PRP RR A H +V + P+ G P R L
Sbjct: 71 ARPSPHLEGAGCETRPWLGPRPRRRLALHLQVPEGARQLGPRTGAQPSRHRRQRAPGLAL 130
Query: 54 CPLGVAAKRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAP 113
GV+ R G+ A G G R R R PR + R+
Sbjct: 131 VVTGVSRIRP----AHGAPGLPRAPKPSAGRGGKEGGERGTEMLRRLRGSPRPNRHPRSG 186
Query: 114 SGVLRRERGAAARTLRLRSPPSAAPTPQPDW 144
AAA LR+PP + + W
Sbjct: 187 PVPAHGVASAAAGPATLRAPPGRGASSETMW 217
>gi|187828892 calcium channel, alpha 1A subunit isoform 4 [Homo
sapiens]
Length = 2506
Score = 37.0 bits (84), Expect = 0.021
Identities = 19/42 (45%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
Query: 12 PGGQHREMRAPRPFRR-----RAEHPEVCKAGGARRPQPGPY 48
P G H R+PR RR R+E P C+ GGAR P GP+
Sbjct: 2355 PTGGHSSGRSPRMERRVPGPARSESPRACRHGGARWPASGPH 2396
>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
Length = 3230
Score = 36.6 bits (83), Expect = 0.027
Identities = 57/194 (29%), Positives = 73/194 (37%), Gaps = 43/194 (22%)
Query: 13 GGQHREMRA--PRPFRRRAEHPEVCKAGG---------------ARRPQPGPYPKRLL-- 53
G Q R++ PRP +R H + AGG A P PGP P +L
Sbjct: 1220 GAQVRQLAVGQPRPLQRNVVH--LVSAGGQHHLISQPAHVALIQAVAPTPGPTPVSVLPS 1277
Query: 54 -CPLGVAAKRGCVEFGAGSRSQSAAADRLP-----GPGYLRVVARKVPRRRLTRACPRLG 107
P A G S AA+++P G +++V R+ PR LT P L
Sbjct: 1278 STPSTTPAPTGL--------SLPLAANQVPPTMVNNTGVVKIVVRQAPRDGLT-PVPPLA 1328
Query: 108 KSRRAPSGVLRRERGAAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPR 167
+ R PS L A R P PTP R+ TL V P LK ++
Sbjct: 1329 PAPRPPSSGL-----PAVLNPRPTLTPGRLPTPTLGTARAPMPTPTL-VRPLLK-LVHSP 1381
Query: 168 GGRVHGKAPARAPL 181
V AP APL
Sbjct: 1382 SPEVSASAPGAAPL 1395
>gi|150170699 kinesin family member 26A [Homo sapiens]
Length = 1882
Score = 36.6 bits (83), Expect = 0.027
Identities = 41/129 (31%), Positives = 45/129 (34%), Gaps = 17/129 (13%)
Query: 5 PSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGC 64
P PC G RE + P PE G RRP P P P P + A R
Sbjct: 912 PEPCKAIVWGDQREDSSAWP---ELLVPEKAAVSGGRRPLPSPAPPP---PQLLEACRAP 965
Query: 65 VEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRERGAA 124
E G G A R P G VA T CPRL R P ERG
Sbjct: 966 EEPGGGGTDGVA---RTPPVGMSGQVAGSPMLPGAT--CPRLAAGSRCP------ERGLL 1014
Query: 125 ARTLRLRSP 133
T+ L+ P
Sbjct: 1015 TTTVTLQRP 1023
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 36.6 bits (83), Expect = 0.027
Identities = 41/153 (26%), Positives = 58/153 (37%), Gaps = 20/153 (13%)
Query: 3 ALPSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKR 62
A P GS + APR RR+ G+ GP P+ G ++
Sbjct: 1610 AAPRAQSGSDSSPEPKAPAPRALPRRSR-------SGSSSKGRGPSPE------GSSSTE 1656
Query: 63 GCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGK----SRRAPSGVLR 118
E SR+ + P P + +R PRRR +R+ P L + SRR+ S
Sbjct: 1657 SSPEHPPKSRTARRGSRSSPEP---KTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSS 1713
Query: 119 RERGAAARTLRLRSPPSAAPTPQPDWRRSWRLR 151
E + RSP ++P P R S R R
Sbjct: 1714 PETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRR 1746
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 36.6 bits (83), Expect = 0.027
Identities = 64/255 (25%), Positives = 94/255 (36%), Gaps = 24/255 (9%)
Query: 5 PSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGC 64
PSP SP Q R +P P RR A P K RR P P PKR + +R
Sbjct: 591 PSPRRYSPPIQRRYSPSPPPKRRTASPPPPPK----RRASPSPPPKRRVSHSPPPKQRSS 646
Query: 65 VEFGAGSRSQSAAADRLPGPGYLRVVAR--KVPRRRLTRACPRLGKSRRAPSGVLRRERG 122
S S S+ + P AR + +R PR ++ +P V RG
Sbjct: 647 PVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPPPV---RRG 703
Query: 123 AAARTLRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAPLA 182
A+ S P +P P R R+ T PE K + ++ R +
Sbjct: 704 AS-------SSPQRRQSPSPSTRPIRRVSRT----PEPKKI--KKAASPSPQSVRRVSSS 750
Query: 183 YALGGRLFEAIACLPGLRSPLQVGTEAVSVHFHPLFALKSRKSIPSCLNMCPASENRGPE 242
++ G A P SP+Q +++ S ++ P +K KS + S+ G
Sbjct: 751 RSVSGSPEPAAKKPPAPPSPVQ--SQSPSTNWSPAVPVKKAKSPTPSPSPPRNSDQEGGG 808
Query: 243 KSSGIPESTRHFTDK 257
K + +H DK
Sbjct: 809 KKKKKKKDKKHKKDK 823
Score = 33.9 bits (76), Expect = 0.17
Identities = 36/113 (31%), Positives = 49/113 (43%), Gaps = 12/113 (10%)
Query: 71 SRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRERGAAA---RT 127
SRS+S + R P P R+ P RR+ P + RR+ S V RR R +A+ +
Sbjct: 304 SRSRSYSPRRRPSPRRRPSPRRRTPPRRM----PPPPRHRRSRSPVRRRRRSSASLSGSS 359
Query: 128 LRLRSPPSAAPTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAP 180
S S +P +P R S R T R+ P PR R H +P P
Sbjct: 360 SSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASP---PR--RRHRPSPPATP 407
Score = 32.0 bits (71), Expect = 0.66
Identities = 35/130 (26%), Positives = 49/130 (37%), Gaps = 16/130 (12%)
Query: 11 SPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGCVEFGAG 70
SP G+ R +P P RRR R P P P P+R P +R
Sbjct: 541 SPRGRRRRSPSPPPTRRR------------RSPSPAPPPRRRRTPTPPPRRR---TPSPP 585
Query: 71 SRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRERGAAARTLRL 130
R +S + R P R P+RR T + P K R +PS +R + +
Sbjct: 586 PRRRSPSPRRYSPPIQRRYSPSPPPKRR-TASPPPPPKRRASPSPPPKRRVSHSPPPKQR 644
Query: 131 RSPPSAAPTP 140
SP + +P
Sbjct: 645 SSPVTKRRSP 654
>gi|239749196 PREDICTED: hypothetical protein XP_002346951 [Homo
sapiens]
Length = 528
Score = 35.8 bits (81), Expect = 0.046
Identities = 43/145 (29%), Positives = 52/145 (35%), Gaps = 32/145 (22%)
Query: 17 REMRAPRPFRRRAEHPEVCKA-------GGARRPQPGPYPKRLLCPLGVAAKRGCVEFGA 69
R RAP P RR P C++ G R P GP + P RG
Sbjct: 255 RSSRAPPPARR----PLPCESLRTPSGTAGPRSPASGPDARGAPTP---GRARG------ 301
Query: 70 GSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACP----------RLGKSRRAPS--GVL 117
G S SA +PGPG R +PR R P + SR A S G
Sbjct: 302 GGASWSATPTTIPGPGPPRPQLLVIPRTSRCRLVPAAVVGRSSSVTIDHSRPASSRGGGA 361
Query: 118 RRERGAAARTLRLRSPPSAAPTPQP 142
RR R + ++ S PTP P
Sbjct: 362 RRLRAGTGVSSQIPYTASLTPTPSP 386
>gi|169166892 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 35.8 bits (81), Expect = 0.046
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 39 GARRPQPGPYPKRLLCPLGVAAKR------GCVEFGAGSRSQSAAADRLPGPGYLRVVA- 91
G P+P P P+ P AA+R GC G ++ +SAA L PG LR +A
Sbjct: 64 GVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALAP 123
Query: 92 -----RKVPRRRLTRACPRLGKSRRAPSGV 116
+ P+RR + +G R SGV
Sbjct: 124 SHCRSLRGPQRRSNSSLSVVGARMRECSGV 153
>gi|239743276 PREDICTED: hypothetical protein XP_002342815 [Homo
sapiens]
Length = 528
Score = 35.8 bits (81), Expect = 0.046
Identities = 43/145 (29%), Positives = 52/145 (35%), Gaps = 32/145 (22%)
Query: 17 REMRAPRPFRRRAEHPEVCKA-------GGARRPQPGPYPKRLLCPLGVAAKRGCVEFGA 69
R RAP P RR P C++ G R P GP + P RG
Sbjct: 255 RSSRAPPPARR----PLPCESLRTPSGTAGPRSPASGPDARGAPTP---GRARG------ 301
Query: 70 GSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACP----------RLGKSRRAPS--GVL 117
G S SA +PGPG R +PR R P + SR A S G
Sbjct: 302 GGASWSATPTTIPGPGPPRPQLLVIPRTSRCRLVPAAVVGRSSSVTIDHSRPASSRGGGA 361
Query: 118 RRERGAAARTLRLRSPPSAAPTPQP 142
RR R + ++ S PTP P
Sbjct: 362 RRLRAGTGVSSQIPYTASLTPTPSP 386
>gi|169166322 PREDICTED: hypothetical protein [Homo sapiens]
Length = 246
Score = 35.8 bits (81), Expect = 0.046
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 12/90 (13%)
Query: 39 GARRPQPGPYPKRLLCPLGVAAKR------GCVEFGAGSRSQSAAADRLPGPGYLRVVA- 91
G P+P P P+ P AA+R GC G ++ +SAA L PG LR +A
Sbjct: 64 GVVHPRPRPIPRNYHPPNSPAARRLVPAFAGCRVAGPSAQLRSAAGGPLELPGELRALAP 123
Query: 92 -----RKVPRRRLTRACPRLGKSRRAPSGV 116
+ P+RR + +G R SGV
Sbjct: 124 SHCRSLRGPQRRSNSSLSVVGARMRECSGV 153
>gi|239508959 PREDICTED: hypothetical protein [Homo sapiens]
Length = 528
Score = 35.8 bits (81), Expect = 0.046
Identities = 43/145 (29%), Positives = 52/145 (35%), Gaps = 32/145 (22%)
Query: 17 REMRAPRPFRRRAEHPEVCKA-------GGARRPQPGPYPKRLLCPLGVAAKRGCVEFGA 69
R RAP P RR P C++ G R P GP + P RG
Sbjct: 255 RSSRAPPPARR----PLPCESLRTPSGTAGPRSPASGPDARGAPTP---GRARG------ 301
Query: 70 GSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACP----------RLGKSRRAPS--GVL 117
G S SA +PGPG R +PR R P + SR A S G
Sbjct: 302 GGASWSATPTTIPGPGPPRPQLLVIPRTSRCRLVPAAVVGRSSSVTIDHSRPASSRGGGA 361
Query: 118 RRERGAAARTLRLRSPPSAAPTPQP 142
RR R + ++ S PTP P
Sbjct: 362 RRLRAGTGVSSQIPYTASLTPTPSP 386
>gi|169171690 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 35.0 bits (79), Expect = 0.078
Identities = 46/172 (26%), Positives = 50/172 (29%), Gaps = 58/172 (33%)
Query: 5 PSPCPGSPGGQHREMRAP---------RPFRRRAEHPEVCKAGGA--RRPQPGPYPKRLL 53
PS CP P + P RP RR P C G R P PGP P
Sbjct: 4 PSRCP--PTAPSEPLTCPMGVSPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRP---- 57
Query: 54 CPLGVAAKRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAP 113
+AAA R +VP RR CPR P
Sbjct: 58 ---------------------TAAATR---------ATFRVPERRTVPPCPRRPARPSQP 87
Query: 114 SGVLRRERGAAAR----------TLRLRSPPSAAPTPQPDWRRSWRLRGTLR 155
RRER A L + P A P P WRL G R
Sbjct: 88 PSAARRERALLANPPQRPRGDAGALCVSRPRGACPRRAPA-GAPWRLGGEFR 138
>gi|169171083 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 35.0 bits (79), Expect = 0.078
Identities = 46/172 (26%), Positives = 50/172 (29%), Gaps = 58/172 (33%)
Query: 5 PSPCPGSPGGQHREMRAP---------RPFRRRAEHPEVCKAGGA--RRPQPGPYPKRLL 53
PS CP P + P RP RR P C G R P PGP P
Sbjct: 4 PSRCP--PTAPSEPLTCPMGVSPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRP---- 57
Query: 54 CPLGVAAKRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAP 113
+AAA R +VP RR CPR P
Sbjct: 58 ---------------------TAAATR---------ATFRVPERRTVPPCPRRPARPSQP 87
Query: 114 SGVLRRERGAAAR----------TLRLRSPPSAAPTPQPDWRRSWRLRGTLR 155
RRER A L + P A P P WRL G R
Sbjct: 88 PSAARRERALLANPPQRPRGDAGALCVSRPRGACPRRAPA-GAPWRLGGEFR 138
>gi|148839382 ring finger protein 169 [Homo sapiens]
Length = 708
Score = 35.0 bits (79), Expect = 0.078
Identities = 35/115 (30%), Positives = 46/115 (40%), Gaps = 10/115 (8%)
Query: 32 PEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGCVEFGAGSRSQSAAADRLPGPGYLRVVA 91
PE G P PG + P G + RGC + A + R GPG+ R A
Sbjct: 63 PEESGCAGCLEP-PG---EAAALPCGHSLCRGCAQRAADAAGPGCPRCRARGPGWARRRA 118
Query: 92 RKVPR--RRLTRACPRLGKSRRAPSGVLRRERGAAARTLRLRSPPSAAPTPQPDW 144
R + + C R + R RR+ GAAA R P AAP +PD+
Sbjct: 119 RDDGQADSEVLGECARRSQPERCRP---RRDGGAAAAGPRPEQEPRAAPA-EPDF 169
>gi|169171833 PREDICTED: hypothetical protein [Homo sapiens]
Length = 157
Score = 34.7 bits (78), Expect = 0.10
Identities = 46/172 (26%), Positives = 50/172 (29%), Gaps = 58/172 (33%)
Query: 5 PSPCPGSPGGQHREMRAP---------RPFRRRAEHPEVCKAGGA--RRPQPGPYPKRLL 53
PS CP P + P RP RR P C G R P PGP P
Sbjct: 4 PSLCP--PTAPSEPLTCPMGVSPAPWGRPLRRSRARPGPCPPEGLVPRAPPPGPRP---- 57
Query: 54 CPLGVAAKRGCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAP 113
+AAA R +VP RR CPR P
Sbjct: 58 ---------------------TAAATR---------ATFRVPERRTVPPCPRRPARPSQP 87
Query: 114 SGVLRRERGAAAR----------TLRLRSPPSAAPTPQPDWRRSWRLRGTLR 155
RRER A L + P A P P WRL G R
Sbjct: 88 PSAARRERALLANPPQRPRGDAGALCVSRPRGACPRRAPA-GAPWRLGGEFR 138
>gi|239745342 PREDICTED: hypothetical protein XP_002343430 [Homo
sapiens]
Length = 230
Score = 34.7 bits (78), Expect = 0.10
Identities = 36/102 (35%), Positives = 41/102 (40%), Gaps = 16/102 (15%)
Query: 95 PRRRLTRACPRLGKSRRAPSGVLRRERGAAART---LRLRSP------PSAAPTPQPDWR 145
P+ RLT C R +RR P R R + T L R P PSA P P P R
Sbjct: 26 PQPRLTLHCNRRWGARRRPRRAGRGRRWGSLGTNGSLTGRGPGSPPLPPSAGPAPPPGLR 85
Query: 146 RSWRLRGTLRVVPE-----LKDFLYPRGGRVHGKAPARAPLA 182
+W G RV P + L P G R H AP P A
Sbjct: 86 EAWVGGGGGRVSPAPGAGLTRGPLAPLGRRRH--APRWEPAA 125
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 34.7 bits (78), Expect = 0.10
Identities = 43/183 (23%), Positives = 61/183 (33%), Gaps = 25/183 (13%)
Query: 5 PSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGC 64
P+P P + G ++ R +R E E + +P P P P
Sbjct: 503 PAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAP-PAPA-------------- 547
Query: 65 VEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRERGAA 124
+ + DR PG R+ R +R+ R +S G RR R
Sbjct: 548 ---SPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSRE 604
Query: 125 ARTLRLR--SPPSAAPTPQPDWRRSWRLR-----GTLRVVPELKDFLYPRGGRVHGKAPA 177
R R R SPP A + R R + G+ + + R G KAPA
Sbjct: 605 KRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPA 664
Query: 178 RAP 180
AP
Sbjct: 665 PAP 667
>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
Length = 426
Score = 34.3 bits (77), Expect = 0.13
Identities = 41/153 (26%), Positives = 55/153 (35%), Gaps = 29/153 (18%)
Query: 3 ALPSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKR 62
A P P PG+P + R P P RRRA + A R P P++
Sbjct: 95 ASPGPAPGAPRARGSCGREPGPRRRRAPSSAGKRPAAAARAAP---PRQ----------- 140
Query: 63 GCVEFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRERG 122
RS + R G V +PRR R C + R P + R
Sbjct: 141 ---------RSLARCLPRSVGSCVRPSVGPSLPRRHCRRHCRCHCRRRPLPKPPPLQPRL 191
Query: 123 AAARTLRLRSP------PSAAPTPQPDWRRSWR 149
+A RL +P PS +P P+ RR+ R
Sbjct: 192 GSASPPRLAAPLAGSRAPSLSPFPRRCRRRAER 224
Score = 31.2 bits (69), Expect = 1.1
Identities = 39/138 (28%), Positives = 50/138 (36%), Gaps = 24/138 (17%)
Query: 6 SPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGCV 65
+P PG P AP+P A P VC P P P+R P A +
Sbjct: 13 TPAPGCPEV------APQPEGTDAPGPAVCSPTARAPPPILPAPQR---PPTRAREWEGA 63
Query: 66 EFGAGSRSQSAAADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRERGAAA 125
+ AG+ AA LPG RRL R ++ P+ R RG+
Sbjct: 64 AWAAGATGVGAALLALPG------------SRRLGRVPLTFREASPGPAPGAPRARGSCG 111
Query: 126 R---TLRLRSPPSAAPTP 140
R R R+P SA P
Sbjct: 112 REPGPRRRRAPSSAGKRP 129
>gi|22547204 hairless protein isoform a [Homo sapiens]
Length = 1189
Score = 34.3 bits (77), Expect = 0.13
Identities = 60/229 (26%), Positives = 82/229 (35%), Gaps = 36/229 (15%)
Query: 5 PSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCP-LGVAAKRG 63
P+P P G HR AE P +AG GP P LC L A +
Sbjct: 716 PTPQPSCNGDTHRTKSIKEETPDSAETPAEDRAG------RGPLPCPSLCELLASTAVKL 769
Query: 64 CVEFGAGSRSQSAAADRLPGPGYL-----RVVARKVPRRRLTRACPRLGKSRRAPSGVLR 118
C+ + + LP + ++A+ V R+ +A LG RA G LR
Sbjct: 770 CLGHERIHMAFAPVTPALPSDDRITNILDSIIAQVVERKIQEKA---LGPGLRAGPG-LR 825
Query: 119 RERGAAARTLRLRSPPSAA----PTPQPDWRRS-------WR---------LRGTLRVVP 158
+ G +R R PP A PQP RR WR ++ TL+
Sbjct: 826 KGLGLPLSPVRPRLPPPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNL 885
Query: 159 ELKDFLYPRGGRVHGKAPARAPLAYALGGRLFEAIACLPGLRSPLQVGT 207
+ L GG+V +P P +LG F P LR G+
Sbjct: 886 WGTEALGALGGQVQALSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGS 934
>gi|22547207 hairless protein isoform b [Homo sapiens]
Length = 1134
Score = 34.3 bits (77), Expect = 0.13
Identities = 60/229 (26%), Positives = 82/229 (35%), Gaps = 36/229 (15%)
Query: 5 PSPCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCP-LGVAAKRG 63
P+P P G HR AE P +AG GP P LC L A +
Sbjct: 716 PTPQPSCNGDTHRTKSIKEETPDSAETPAEDRAG------RGPLPCPSLCELLASTAVKL 769
Query: 64 CVEFGAGSRSQSAAADRLPGPGYL-----RVVARKVPRRRLTRACPRLGKSRRAPSGVLR 118
C+ + + LP + ++A+ V R+ +A LG RA G LR
Sbjct: 770 CLGHERIHMAFAPVTPALPSDDRITNILDSIIAQVVERKIQEKA---LGPGLRAGPG-LR 825
Query: 119 RERGAAARTLRLRSPPSAA----PTPQPDWRRS-------WR---------LRGTLRVVP 158
+ G +R R PP A PQP RR WR ++ TL+
Sbjct: 826 KGLGLPLSPVRPRLPPPGALLWLQEPQPCPRRGFHLFQEHWRQGQPVLVSGIQRTLQGNL 885
Query: 159 ELKDFLYPRGGRVHGKAPARAPLAYALGGRLFEAIACLPGLRSPLQVGT 207
+ L GG+V +P P +LG F P LR G+
Sbjct: 886 WGTEALGALGGQVQALSPLGPPQPSSLGSTTFWEGFSWPELRPKSDEGS 934
>gi|23943900 transmembrane channel-like 8 [Homo sapiens]
Length = 726
Score = 34.3 bits (77), Expect = 0.13
Identities = 20/42 (47%), Positives = 21/42 (50%), Gaps = 11/42 (26%)
Query: 7 PCPGSPGGQHREMRAPRPFRRRAEHPEVCKAGGARRPQPGPY 48
PCPGSPG Q APRP P V A G R P PG +
Sbjct: 679 PCPGSPGHQ-----APRP------GPSVVDAAGLRSPCPGQH 709
>gi|194272140 dendrin [Homo sapiens]
Length = 711
Score = 33.9 bits (76), Expect = 0.17
Identities = 43/143 (30%), Positives = 50/143 (34%), Gaps = 28/143 (19%)
Query: 36 KAGGARRPQPG------------------PYPKR--LLCPLGVAAKRGC-VEFGAGSRSQ 74
KAGGARR PG P P R L P+G A + + GS
Sbjct: 131 KAGGARRSPPGRPRPEPRNAPRVAQLAGLPAPLRPERLAPVGRAPRPSAQPQSDPGSAWA 190
Query: 75 SAAADRLPGPG------YLRVVARKVPRRRLTRACPRLG-KSRRAPSGVLRRERGAAART 127
R PGP LR A PRRR R P + S P L +RG
Sbjct: 191 GPWGGRRPGPPSYEAHLLLRGSAGTAPRRRWDRPPPYVAPPSYEGPHRTLGTKRGPGNSQ 250
Query: 128 LRLRSPPSAAPTPQPDWRRSWRL 150
+ S P+A P R RL
Sbjct: 251 VPTSSAPAATPARTDGGRTKKRL 273
>gi|24586659 scavenger receptor class F, member 2 isoform 1 [Homo
sapiens]
Length = 870
Score = 33.9 bits (76), Expect = 0.17
Identities = 63/243 (25%), Positives = 86/243 (35%), Gaps = 38/243 (15%)
Query: 20 RAPRPFRRRAEHPEVCKAGGARRPQPGPYPKRLLCPLGVAAKRGCVEFGAGSRSQSAA-- 77
R RP R R E GG P P+R P A + V + G S +AA
Sbjct: 634 REARPARARGE------IGGLSL---SPSPERRKPPPPDPATKPKVSWIHGKHSAAAAGR 684
Query: 78 ADRLPGPGYLRVVARKVPRRRLTRACPRLGKSRRAPSGVLRRERGAAARTLRLRSPPSAA 137
A P PG + A P K +R PS +A T+ SP +
Sbjct: 685 APSPPPPG--------------SEAAPSPSKRKRTPSD-------KSAHTVEHGSPRTRD 723
Query: 138 PTPQPDWRRSWRLRGTLRVVPELKDFLYPRGGRVHGKAPARAPLAYALGGRLFEAIACLP 197
PTP+P P + PR HG+ + A A A L +
Sbjct: 724 PTPRPPGLPEEATALAAPSPPRARARAAPRPLGAHGRRRSPAKRAEA-ASMLAADVRGKT 782
Query: 198 GLRSPLQVGTEAVSVHFHPLFALKSRKSIP--SCLNMCPASENRGPEKSS---GIPESTR 252
+V A P K+++S+P S PA+E GPEK++ PE+ R
Sbjct: 783 RSLGRAEVALGAQGPREKPAPPQKAKRSVPPASPARAPPATETPGPEKAATDLPAPETPR 842
Query: 253 HFT 255
T
Sbjct: 843 KKT 845
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,089,251
Number of Sequences: 37866
Number of extensions: 918837
Number of successful extensions: 3434
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 176
Number of HSP's that attempted gapping in prelim test: 3293
Number of HSP's gapped (non-prelim): 295
length of query: 293
length of database: 18,247,518
effective HSP length: 101
effective length of query: 192
effective length of database: 14,423,052
effective search space: 2769225984
effective search space used: 2769225984
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.