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Search of human proteins with 239753555
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753555 PREDICTED: hypothetical protein XP_002345695 [Homo
sapiens]
(258 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753555 PREDICTED: hypothetical protein XP_002345695 [Homo ... 534 e-152
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 44 1e-04
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 43 3e-04
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 43 3e-04
gi|197276661 paired box 1 [Homo sapiens] 42 4e-04
gi|182507165 thymus expressed gene 3-like [Homo sapiens] 41 0.001
gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens] 40 0.002
gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transfera... 40 0.002
gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens] 39 0.006
gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo ... 39 0.006
gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo ... 39 0.006
gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo ... 39 0.006
gi|239755450 PREDICTED: hypothetical protein [Homo sapiens] 38 0.008
gi|239749929 PREDICTED: hypothetical protein [Homo sapiens] 38 0.010
gi|239744238 PREDICTED: hypothetical protein [Homo sapiens] 38 0.010
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 37 0.013
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 37 0.013
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 37 0.017
gi|30039694 zinc finger protein 598 [Homo sapiens] 37 0.017
gi|239748099 PREDICTED: hypothetical protein [Homo sapiens] 37 0.022
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 36 0.029
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 36 0.029
gi|113430177 PREDICTED: hypothetical protein [Homo sapiens] 36 0.038
gi|113416171 PREDICTED: hypothetical protein [Homo sapiens] 35 0.050
gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo ... 35 0.050
gi|239743072 PREDICTED: hypothetical protein [Homo sapiens] 35 0.050
gi|239508718 PREDICTED: hypothetical protein [Homo sapiens] 35 0.050
gi|116284398 WAS/WASL interacting protein family, member 1 [Homo... 35 0.065
gi|38373695 WAS/WASL interacting protein family, member 1 [Homo ... 35 0.065
gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens] 35 0.065
>gi|239753555 PREDICTED: hypothetical protein XP_002345695 [Homo
sapiens]
Length = 258
Score = 534 bits (1376), Expect = e-152
Identities = 258/258 (100%), Positives = 258/258 (100%)
Query: 1 MIHLADTEVEENFERFKISTLLVTRASVLCFQFTKSPDPCFSSAAHLATSALFIAVPADT 60
MIHLADTEVEENFERFKISTLLVTRASVLCFQFTKSPDPCFSSAAHLATSALFIAVPADT
Sbjct: 1 MIHLADTEVEENFERFKISTLLVTRASVLCFQFTKSPDPCFSSAAHLATSALFIAVPADT 60
Query: 61 RLRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRG 120
RLRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRG
Sbjct: 61 RLRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRG 120
Query: 121 GTRHRSRTLYCPLDQKQWPSRKRERPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLC 180
GTRHRSRTLYCPLDQKQWPSRKRERPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLC
Sbjct: 121 GTRHRSRTLYCPLDQKQWPSRKRERPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLC 180
Query: 181 PATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVLGKDTQPPSLFSHLKKMQS 240
PATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVLGKDTQPPSLFSHLKKMQS
Sbjct: 181 PATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVLGKDTQPPSLFSHLKKMQS 240
Query: 241 IMRTSQGWEHRMRLTDTT 258
IMRTSQGWEHRMRLTDTT
Sbjct: 241 IMRTSQGWEHRMRLTDTT 258
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 43.9 bits (102), Expect = 1e-04
Identities = 37/139 (26%), Positives = 56/139 (40%), Gaps = 24/139 (17%)
Query: 102 ASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKRE-------RPRLPPPPGS 154
AS + A P R +R G R ++ CPL ++ SR+ + PPPP
Sbjct: 158 ASHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPP-- 215
Query: 155 RKSRLRRWARASPHPGELAGLTSRLCPAT-------------CRGRGRGLARAQATHIPL 201
++ R A+ ++ G R CP + R RG G + Q P
Sbjct: 216 -RALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQRQRFSAP- 273
Query: 202 SGHSRGIQTRPSSTPSPPG 220
S HS G +T P+ + + PG
Sbjct: 274 SSHSTGARTLPTPSRARPG 292
Score = 32.0 bits (71), Expect = 0.55
Identities = 48/165 (29%), Positives = 59/165 (35%), Gaps = 34/165 (20%)
Query: 69 SGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRGGTRHRS-- 126
SG AL + G RA R E R+ P S PPS+ GTR R
Sbjct: 209 SGTPPPPRALWNRHGGAAGARAQVRGSEKRACPGSTL-----PPSSVLAGCVGTRARGHG 263
Query: 127 ----RTLYCPLDQ----KQWPSRKRERPRLPPPPGSRK-SRLRRWARASPHPGELAGLTS 177
+ P + P+ R RP P P GS +RLR S GLT
Sbjct: 264 GVQRQRFSAPSSHSTGARTLPTPSRARPGKPAPRGSAPPARLRGGGGGS-------GLTQ 316
Query: 178 RLCPATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVL 222
+ GRG G+ + TH + R S P P GVL
Sbjct: 317 LVGS----GRGSGVTHSVGTHALAT-------RRGSRAPRPVGVL 350
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 42.7 bits (99), Expect = 3e-04
Identities = 46/153 (30%), Positives = 63/153 (41%), Gaps = 17/153 (11%)
Query: 94 REEARSWPASATRAPAAPPSASRPTR---GGTRHRSRTLYCPLDQKQWPSRKRERPRLPP 150
R +RSW S +R+ S SR R GG+R R P + + R+R R R
Sbjct: 416 RSRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSR--- 472
Query: 151 PPGSRKSRLRRWARASPHPGELAGLTS-RLCPATCRGRGRGLARAQATHIPLSGHSRGIQ 209
R RR R H +S L P+ R R L R+++ H P SR
Sbjct: 473 --SHSGDRYRRGGRGLRHHSSSRSRSSWSLSPS----RSRSLTRSRS-HSPSPSQSRSRS 525
Query: 210 TRPSSTPSPPGVLGKDTQP---PSLFSHLKKMQ 239
S +PSP K T+P P++ LKK +
Sbjct: 526 RSRSQSPSPSPAREKLTRPAASPAVGEKLKKTE 558
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 42.7 bits (99), Expect = 3e-04
Identities = 52/163 (31%), Positives = 70/163 (42%), Gaps = 26/163 (15%)
Query: 94 REEARSWPASATRAPAAPPSASRPTRGGTRHRSRTL-YCPLDQ---KQWPSRKRERP--R 147
R +RS S +R + PS +RP R RHRSR+ Y P + ++ PS +R P R
Sbjct: 275 RPRSRSRSKSRSRTRSRSPSHTRPRR---RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRR 331
Query: 148 LPPPPGSRKSR--LRRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSGHS 205
+PPPP R+SR +RR R+S L+G +S ++ R R + T P
Sbjct: 332 MPPPPRHRRSRSPVRRRRRSS---ASLSGSSS--SSSSSRSRSPPKKPPKRTSSPPRKTR 386
Query: 206 R----GIQTRPSSTPSPPGVLGKDTQPPSLFSHLKKMQSIMRT 244
R R PSPP PP H Q RT
Sbjct: 387 RLSPSASPPRRRHRPSPPAT------PPPKTRHSPTPQQSNRT 423
Score = 38.9 bits (89), Expect = 0.004
Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 15/169 (8%)
Query: 93 RREEARSWPASATRAPAAPPSASRPTRGGTRHR-SRTLYCPLDQKQW---PSRKRERPRL 148
RR + + P R P PP P+ R S Y P Q+++ P KR
Sbjct: 558 RRSPSPAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASP 617
Query: 149 PPPPGSRKS----RLRRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQATH-----I 199
PPPP R S RR + + P + +T R P+ +G + +++T
Sbjct: 618 PPPPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQ 677
Query: 200 PLSGHSRGIQTR-PSSTPSPPGV-LGKDTQPPSLFSHLKKMQSIMRTSQ 246
P HS + R P ++ SPP V G + P S + I R S+
Sbjct: 678 PNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPSTRPIRRVSR 726
Score = 28.9 bits (63), Expect = 4.6
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 59 DTRLRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAAPPSASRPT 118
D R + +H +G E R S S + R+ + + P R +PP PT
Sbjct: 504 DERPKRSHVKNG----EVGRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPP----PT 555
Query: 119 RGGTRHRSRTLYCPLDQKQWPSRKRERPRLPPPPGSRKS-RLRRWA-----RASPHP 169
R R RS + P +++ P+ R R P PP R+S RR++ R SP P
Sbjct: 556 R---RRRSPSPAPPPRRRRTPTPPPRR-RTPSPPPRRRSPSPRRYSPPIQRRYSPSP 608
>gi|197276661 paired box 1 [Homo sapiens]
Length = 534
Score = 42.4 bits (98), Expect = 4e-04
Identities = 42/136 (30%), Positives = 51/136 (37%), Gaps = 20/136 (14%)
Query: 100 WPASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKRERPRLP---------- 149
WP A P APP A GG + T P + P+ RPR P
Sbjct: 393 WPP-AQGPPLAPPGAGVAVHGGELAAAMTFKHPSREGSLPA-PAARPRTPSVAYTDCPSR 450
Query: 150 --PPPGSR-KSRLRRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSGHSR 206
PP GS ++R RR +A P A PA GR GLA +A+ P
Sbjct: 451 PRPPRGSSPRTRARRERQADPGAQVCAA-----APAIGTGRIGGLAEEEASAGPRGARPA 505
Query: 207 GIQTRPSSTPSPPGVL 222
Q +P P PP L
Sbjct: 506 SPQAQPCLWPDPPHFL 521
>gi|182507165 thymus expressed gene 3-like [Homo sapiens]
Length = 629
Score = 40.8 bits (94), Expect = 0.001
Identities = 44/148 (29%), Positives = 60/148 (40%), Gaps = 18/148 (12%)
Query: 90 AACRREEARSWPASATRAPAAPPSASRPTRGGTRHR-SRTLYCPLDQKQWPSRKRERPRL 148
AA R A SW + A PAAPP+A P R + Y P Q R
Sbjct: 318 AALSRAWASSWESEAAPEPAAPPAAPSPPDSPAEGRLVKAQYIPGAQAATRGLPGRAARR 377
Query: 149 PPPPGSR-----KSRLRRWARASPHPGELAGLTSRLCPATCRG--RGRGLARAQATHIPL 201
PPP +R +S R RA+ G +A + R RG R R +R+Q + L
Sbjct: 378 KPPPLTRGRSVEQSPPRERPRAAGRRGRMAEASGR------RGSPRARKASRSQ-SETSL 430
Query: 202 SGHSRGIQTRPSSTPSPPGVLGKDTQPP 229
G + + PS P P ++ +PP
Sbjct: 431 LGRASAV---PSGPPKYPTAEREEPRPP 455
>gi|47271443 splicing factor, arginine/serine-rich 2 [Homo sapiens]
Length = 221
Score = 40.4 bits (93), Expect = 0.002
Identities = 31/98 (31%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 80 RAASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWP 139
R+ S S R+ R +RS S TR+ + S SR R RS++ + + +
Sbjct: 129 RSRSRSRS-RSRSRSRYSRSKSRSRTRSRSRSTSKSRSAR-----RSKSKSSSVSRSRSR 182
Query: 140 SRKRERPRLPPPPGSRKSRLRRWARASPHPGELAGLTS 177
SR R R R PPP R+S+ R +++ P E G S
Sbjct: 183 SRSRSRSRSPPPVSKRESKSRSRSKSPPKSPEEEGAVS 220
>gi|40789265 beta 1,4-N-acetylgalactosaminyltransferase-transferase
4 [Homo sapiens]
Length = 1039
Score = 40.0 bits (92), Expect = 0.002
Identities = 57/200 (28%), Positives = 71/200 (35%), Gaps = 58/200 (29%)
Query: 98 RSWPAS-ATRAPA------APPSASRPTRGGTRHRSRTLYCPLDQKQWPSRK-------- 142
RS P S A APA APP+ RP GGT SR L W +R
Sbjct: 456 RSGPQSPAPAAPAQPGATLAPPTPPRPRDGGTPRHSRAL-------SWAARAARPLPLFL 508
Query: 143 -RERPRLP----PPPGSRKSRLRRWARASP-----------------HPGELAGLTSRLC 180
R P P PPP +R+R RASP HP L + R
Sbjct: 509 GRAPPPRPAVEQPPPKVYVTRVRPGQRASPRAPAPRAPWPPFPGVFLHPRPLPRVQLRAP 568
Query: 181 PATCRGRGRGL-----------ARAQATHIPLSGHSRGIQTRPSSTPSPPGVLGKDTQPP 229
P R GR ARAQAT G +R T + P+ L + +P
Sbjct: 569 PRPPRPHGRRTGGPQATQPRPPARAQATQGGREGQAR---TLGPAAPTVDSNLSSEARPV 625
Query: 230 SLFSHLKKMQSIMRTSQGWE 249
+ F L ++ +G E
Sbjct: 626 TSFLSLSQVSGPQLPGEGEE 645
>gi|239754873 PREDICTED: similar to hCG2040393 [Homo sapiens]
Length = 333
Score = 38.5 bits (88), Expect = 0.006
Identities = 45/180 (25%), Positives = 63/180 (35%), Gaps = 25/180 (13%)
Query: 62 LRATHEWSGVWDKEAALHRAASESHGDRAACR----REEARSWPASATRAPAAPPSASRP 117
L A H W +E + SE+ R CR R + P + P+ P S R
Sbjct: 22 LHAAHTRHSPWVREP--EQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPRE 79
Query: 118 ------TRGGTRHRSRTLYCPLDQKQWPSRKRERPRLP--------PPPGSRKSRLRRWA 163
GG+ H PL SR R++P P PPPG+ + R
Sbjct: 80 PPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHR 137
Query: 164 RASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVLG 223
R P PG + L + G R + A +P ++R P+ P G G
Sbjct: 138 REPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP---YTREGPREPTPPAGPQGFAG 194
>gi|239749412 PREDICTED: hypothetical protein XP_002347031 [Homo
sapiens]
Length = 333
Score = 38.5 bits (88), Expect = 0.006
Identities = 45/180 (25%), Positives = 63/180 (35%), Gaps = 25/180 (13%)
Query: 62 LRATHEWSGVWDKEAALHRAASESHGDRAACR----REEARSWPASATRAPAAPPSASRP 117
L A H W +E + SE+ R CR R + P + P+ P S R
Sbjct: 22 LHAAHTRHSPWVREP--EQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPRE 79
Query: 118 ------TRGGTRHRSRTLYCPLDQKQWPSRKRERPRLP--------PPPGSRKSRLRRWA 163
GG+ H PL SR R++P P PPPG+ + R
Sbjct: 80 PPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHR 137
Query: 164 RASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVLG 223
R P PG + L + G R + A +P ++R P+ P G G
Sbjct: 138 REPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP---YTREGPREPTPPAGPQGFAG 194
>gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo
sapiens]
Length = 529
Score = 38.5 bits (88), Expect = 0.006
Identities = 37/117 (31%), Positives = 46/117 (39%), Gaps = 10/117 (8%)
Query: 93 RREEARSWPASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKRERPRLPPPP 152
+R RS R P A P R G R+R C L ++P R E P P PP
Sbjct: 70 QRRAGRSLIRQFRRTPEATPQG----RLGLESRTRLAPCALRPDRFPRRFPEPPPQPAPP 125
Query: 153 --GSRKSRLRRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSGHSRG 207
G+RK R A SP +G+ R P R + G R H+P G G
Sbjct: 126 AGGARKERDAGAADLSPRRPGRSGVARR--PGDARTQSAGPER--RAHLPGPGAGPG 178
>gi|239743547 PREDICTED: hypothetical protein XP_002342883 [Homo
sapiens]
Length = 333
Score = 38.5 bits (88), Expect = 0.006
Identities = 45/180 (25%), Positives = 63/180 (35%), Gaps = 25/180 (13%)
Query: 62 LRATHEWSGVWDKEAALHRAASESHGDRAACR----REEARSWPASATRAPAAPPSASRP 117
L A H W +E + SE+ R CR R + P + P+ P S R
Sbjct: 22 LHAAHTRHSPWVREP--EQRHSETGWFRGLCRSTGKRRPGHTAPRTQQPKPSGPSSHPRE 79
Query: 118 ------TRGGTRHRSRTLYCPLDQKQWPSRKRERPRLP--------PPPGSRKSRLRRWA 163
GG+ H PL SR R++P P PPPG+ + R
Sbjct: 80 PPLPGAVTGGSLHFQEPP--PLGAATAGSRHRQKPPSPGSRHRWEPPPPGAATATGSRHR 137
Query: 164 RASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVLG 223
R P PG + L + G R + A +P ++R P+ P G G
Sbjct: 138 REPPSPGATTAGSCHLRSSGSTGTRRAPSHPAALQVP---YTREGPREPTPPAGPQGFAG 194
>gi|239755450 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 38.1 bits (87), Expect = 0.008
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 27/128 (21%)
Query: 62 LRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAA---PPSASRPT 118
LRA G W A + +ES+ + + R R SA P A PP +RP+
Sbjct: 5 LRAGRAGRGPWIIRGASRPSGAESYSELLSSRPASPRGASFSAEPRPRASLPPPRPARPS 64
Query: 119 RGGTRHRSRTLYCPLDQKQWPSRKRERP-RLP-------PPPGSRKSRLRRWARASPHPG 170
WP R RP R P PPPG+R R A P
Sbjct: 65 H----------------LLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQ 108
Query: 171 ELAGLTSR 178
++AGL R
Sbjct: 109 QIAGLRRR 116
>gi|239749929 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 37.7 bits (86), Expect = 0.010
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 27/128 (21%)
Query: 62 LRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAA---PPSASRPT 118
LRA G W A + +ES+ + + R R SA P A PP +RP+
Sbjct: 5 LRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPS 64
Query: 119 RGGTRHRSRTLYCPLDQKQWPSRKRERP-RLP-------PPPGSRKSRLRRWARASPHPG 170
WP R RP R P PPPG+R R A P
Sbjct: 65 H----------------LLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQ 108
Query: 171 ELAGLTSR 178
++AGL R
Sbjct: 109 QIAGLRRR 116
>gi|239744238 PREDICTED: hypothetical protein [Homo sapiens]
Length = 153
Score = 37.7 bits (86), Expect = 0.010
Identities = 37/128 (28%), Positives = 47/128 (36%), Gaps = 27/128 (21%)
Query: 62 LRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAA---PPSASRPT 118
LRA G W A + +ES+ + + R R SA P A PP +RP+
Sbjct: 5 LRAGRAGRGPWIIRGASRPSGAESYSELLSSRPVSPRGASFSAEPRPRASLPPPRPARPS 64
Query: 119 RGGTRHRSRTLYCPLDQKQWPSRKRERP-RLP-------PPPGSRKSRLRRWARASPHPG 170
WP R RP R P PPPG+R R A P
Sbjct: 65 H----------------LLWPKRLPGRPGRAPGDRRAALPPPGTRSPFARAAAELGPSYQ 108
Query: 171 ELAGLTSR 178
++AGL R
Sbjct: 109 QIAGLRRR 116
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 37.4 bits (85), Expect = 0.013
Identities = 58/209 (27%), Positives = 77/209 (36%), Gaps = 33/209 (15%)
Query: 36 SPDPCFSSAAHLATSALFIAVPADTRLRATH-EWSGVWDKEAALHRAASE-SHGDRAACR 93
SP C S + V +R++ + S W A+ A+S + AA
Sbjct: 9 SPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMALLSSAAAP 68
Query: 94 REEARSWPASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKRERPRLPPPPG 153
EEA + A+ATR+P S S +RGG +R + P P PPP G
Sbjct: 69 EEEAEA--AAATRSPQPSSSGSSSSRGGGAPVARP---EPGRAASPGSMVPGPPAPPPSG 123
Query: 154 SRK----------SRLRRWARASPHPGELAGLTSRLCPATCRGRGR-GLARAQATHIP-- 200
++ + L W P P +L L L P RGR G RAQ P
Sbjct: 124 DQQPAPSAGSGSTADLPEW----PWPLQLLLL---LAPGRGCARGRAGEGRAQCAGSPST 176
Query: 201 ------LSGHSRGIQTRPSSTPSPPGVLG 223
S R RP+ PS PG G
Sbjct: 177 APRPRTCSSPGRATPHRPAGQPSHPGGAG 205
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 37.4 bits (85), Expect = 0.013
Identities = 58/209 (27%), Positives = 77/209 (36%), Gaps = 33/209 (15%)
Query: 36 SPDPCFSSAAHLATSALFIAVPADTRLRATH-EWSGVWDKEAALHRAASE-SHGDRAACR 93
SP C S + V +R++ + S W A+ A+S + AA
Sbjct: 9 SPVSCRKRTRRCLKSQMVRMVSVSSRMKVSRLTLSCRWLSSASFSVASSSMALLSSAAAP 68
Query: 94 REEARSWPASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKRERPRLPPPPG 153
EEA + A+ATR+P S S +RGG +R + P P PPP G
Sbjct: 69 EEEAEA--AAATRSPQPSSSGSSSSRGGGAPVARP---EPGRAASPGSMVPGPPAPPPSG 123
Query: 154 SRK----------SRLRRWARASPHPGELAGLTSRLCPATCRGRGR-GLARAQATHIP-- 200
++ + L W P P +L L L P RGR G RAQ P
Sbjct: 124 DQQPAPSAGSGSTADLPEW----PWPLQLLLL---LAPGRGCARGRAGEGRAQCAGSPST 176
Query: 201 ------LSGHSRGIQTRPSSTPSPPGVLG 223
S R RP+ PS PG G
Sbjct: 177 APRPRTCSSPGRATPHRPAGQPSHPGGAG 205
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 37.0 bits (84), Expect = 0.017
Identities = 42/132 (31%), Positives = 52/132 (39%), Gaps = 16/132 (12%)
Query: 98 RSWPASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKRERPRLPPPPGSRKS 157
RS P+S R A A R R R R ++ R R RPR PP GS +S
Sbjct: 367 RSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRSSASAPRR----RGRRRPRPAPPRGSSRS 422
Query: 158 RLRRWARASPHPGELAGLTS-RLCPATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTP 216
R AR+S G G P + RG G RA+ R + RP+ST
Sbjct: 423 LSR--ARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAK---------ERPPRARPASTS 471
Query: 217 SPPGVLGKDTQP 228
PG G+ P
Sbjct: 472 PSPGAHGRRGGP 483
Score = 31.6 bits (70), Expect = 0.72
Identities = 34/147 (23%), Positives = 51/147 (34%), Gaps = 16/147 (10%)
Query: 82 ASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRGGTRH----------RSRTLYC 131
+S ++ R E R S + +P P S + G RH RSR+ Y
Sbjct: 500 SSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRS-YS 558
Query: 132 PLDQKQWPSRKRERPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLCPATCRGRGRGL 191
P+ + R+R+ P P +R R P P + S R
Sbjct: 559 PIRK-----RRRDSPSFMEPRRITSARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSPSP 613
Query: 192 ARAQATHIPLSGHSRGIQTRPSSTPSP 218
+ ++ S +R PS TPSP
Sbjct: 614 GHSHGSYSSRSHGTRSRTRSPSRTPSP 640
Score = 31.2 bits (69), Expect = 0.93
Identities = 49/180 (27%), Positives = 63/180 (35%), Gaps = 35/180 (19%)
Query: 74 KEAALHRAA--SESHGDRAAC----------RREEARSWPASATRAPAAPPSASRPTRGG 121
KE+ R+A S+ G RAA RR +RS ASA R P RG
Sbjct: 361 KESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSRS-SASAPRRRGRRRPRPAPPRGS 419
Query: 122 TRHRSRTLYCPLDQKQWPSRKRERPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLCP 181
+R SR R P P PGS + RA P ++ P
Sbjct: 420 SRSLSRA-----RSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSP 474
Query: 182 ATCRGR-----GRGLARAQATH--------IPLSGHSRGIQTR---PSSTPSPPGVLGKD 225
GR G+ +R+ H P SR + R PS +PSP L +D
Sbjct: 475 G-AHGRRGGPEGKSSSRSPGPHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRD 533
>gi|30039694 zinc finger protein 598 [Homo sapiens]
Length = 904
Score = 37.0 bits (84), Expect = 0.017
Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 9/71 (12%)
Query: 101 PASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRKRE-RPRLPPPPGSRKSRL 159
PA A AP PP RP + CP Q+ +P+ PR+PPPPG L
Sbjct: 640 PAPARSAPKEPPGLPRPLG--------SFPCPTPQEDFPALGGPCPPRMPPPPGFSAVVL 691
Query: 160 RRWARASPHPG 170
+ P PG
Sbjct: 692 LKGTPPPPPPG 702
>gi|239748099 PREDICTED: hypothetical protein [Homo sapiens]
Length = 295
Score = 36.6 bits (83), Expect = 0.022
Identities = 49/195 (25%), Positives = 70/195 (35%), Gaps = 36/195 (18%)
Query: 58 ADTRLRATHEWSGVWDKEAALHRAASESHGDRAACRREEARSWPASATRA--PAAPPSAS 115
A ++LR ++G + + ++A + G+ R + R+WPA A
Sbjct: 55 ASSKLRV---FTGYFSVPHGVGKSAGAAAGEEGGARLQATRTWPAGILEGGPQVAARGGG 111
Query: 116 RPTRGG--------TRHRSRTLYCPLDQKQWPSRKRERPRLPPPPGSRKSRLRRWARASP 167
R GG T R PL + W R RP+ P G R R A ASP
Sbjct: 112 RGWEGGGLGARRAVTAARRGGASRPLAGEPWREAARRRPQQCPQWG-RARESRSAALASP 170
Query: 168 HPGEL--------AGLTSRLCPATCRGRGRGLARAQATHIP------LSGHSRGIQ---- 209
GL ++ + R G G ARA+ +P SG +R +
Sbjct: 171 RVSNAPTTPASRNPGLRAQERQSGRRAAGGGGARAEPPRVPPCRPAGCSGGNRSRRAAGA 230
Query: 210 ----TRPSSTPSPPG 220
TR P PPG
Sbjct: 231 GPRTTRRKPPPRPPG 245
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.029
Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 90 AACRREEARSWPASA-------TRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRK 142
A+ R W AS + A P R +R G R ++ CPL ++ SR+
Sbjct: 139 ASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRR 198
Query: 143 RE-------RPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQ 195
+ PPPP ++ R A+ ++ G R CP + LA
Sbjct: 199 CQGLGSSWGGSGTPPPP---RALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCV 255
Query: 196 ATHIPLSGHSRGIQTRPSSTPSPPGVLG 223
T GH G+Q + S PS G
Sbjct: 256 GTR--ARGHG-GVQRQRFSAPSSHSTSG 280
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.029
Identities = 37/148 (25%), Positives = 54/148 (36%), Gaps = 20/148 (13%)
Query: 90 AACRREEARSWPASA-------TRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQWPSRK 142
A+ R W AS + A P R +R G R ++ CPL ++ SR+
Sbjct: 139 ASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRR 198
Query: 143 RE-------RPRLPPPPGSRKSRLRRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQ 195
+ PPPP ++ R A+ ++ G R CP + LA
Sbjct: 199 CQGLGSSWGGSGTPPPP---RALWNRHGGAAGARAQVRGSEKRACPGSTLPPSSVLAGCV 255
Query: 196 ATHIPLSGHSRGIQTRPSSTPSPPGVLG 223
T GH G+Q + S PS G
Sbjct: 256 GTR--ARGHG-GVQRQRFSAPSSHSTSG 280
>gi|113430177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 2028
Score = 35.8 bits (81), Expect = 0.038
Identities = 46/158 (29%), Positives = 57/158 (36%), Gaps = 30/158 (18%)
Query: 87 GDRAACRREEA---------RSWPASATRAPAAPPSASRPTRGGTRHRSRTLYCPLDQKQ 137
G+R+A R + A RSW TR AP T R RSR
Sbjct: 511 GNRSAARTDIAPTPGALRGYRSW----TRRAIAPTPG---TLSSYRSRSRRTIASTPATL 563
Query: 138 WPSRKRERPRLPPPPGSRKSRLRR-----WARASPHPGELAGLTSRL------CPATCRG 186
+ R L P PG+ + LRR +P PG L+G SR P T RG
Sbjct: 564 RGEKSRAHTSLAPTPGALRDALRRDRSPVRRAIAPTPGTLSGYRSRARTAIAPTPGTLRG 623
Query: 187 -RGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPGVLG 223
R R +T L G T S P+P + G
Sbjct: 624 YRPRSRRAIASTPATLRGEKSRAHT--SLAPAPGALRG 659
Score = 33.1 bits (74), Expect = 0.25
Identities = 44/147 (29%), Positives = 55/147 (37%), Gaps = 13/147 (8%)
Query: 87 GDRAACRREEARSWPA-SATRAPAAPPSASRP-TRGGTRHRSRTLYCPLDQKQWPSRKRE 144
GDR+A R R+ A R+ A AS P T G R P R
Sbjct: 367 GDRSAARTAIVRTPGALGRDRSRARSAIASTPGTLQGNRSSVSKAIAPAPGALRGDRSAA 426
Query: 145 RPRLPPPPGS-RKSRLRRWARASPHPGELAGLTSRLC------PATCRGRGRGLARAQAT 197
R P PG+ + R R + + PG L G TS C P RG RA A
Sbjct: 427 RTAFVPTPGALHRDRSRARSAIASTPGTLRGNTSSACKAIAPTPGALRGYKSWARRAIA- 485
Query: 198 HIPLSGHSRGIQTRPSSTPSPP-GVLG 223
P G RG ++ + +P G LG
Sbjct: 486 --PNPGAWRGYRSTTGTAIAPNLGALG 510
Score = 31.2 bits (69), Expect = 0.93
Identities = 44/147 (29%), Positives = 55/147 (37%), Gaps = 22/147 (14%)
Query: 98 RSWPASATRAPAAPPSA-----SRPTRG-----GTRHRSRTLYC----PLDQKQWPSRKR 143
RSW A RA A P SR R GT+H R+ C P R +
Sbjct: 225 RSW---AHRAIAPTPGCLYSDRSRAHRAIAPARGTKHGGRSWACRSIAPKPGSLCGDRSQ 281
Query: 144 ERPRLPPPPGSRKSRLRRWARA-SPHPGELAGLTSRLCPATCRGRG---RGLARAQATHI 199
+ P G+R+ R RA +P PG L G SR C A G +R
Sbjct: 282 ASRAIDPTLGARRGGRSRAHRAIAPTPGSLCGNRSRACGAIALTPGVLCGVRSRVPKDIT 341
Query: 200 PLSGHSRGIQTRPSSTPSP-PGVLGKD 225
P G RG ++ +P PG L D
Sbjct: 342 PTPGALRGYKSWVCRAIAPTPGALRGD 368
>gi|113416171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 265
Score = 35.4 bits (80), Expect = 0.050
Identities = 46/158 (29%), Positives = 62/158 (39%), Gaps = 18/158 (11%)
Query: 78 LHRAASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRGGT--RHRSRTLYCPLDQ 135
L R + G CR + A+ T + A+ P ++ PT G T R S CP
Sbjct: 33 LPRRLPLAQGSPRCCRFCKGSVSTATVTSSGASAPGSADPTLGSTAARRASAPWACPAGC 92
Query: 136 KQWPSRKRERPRLPPPP-GSRKSRLRRWARASPHPGELAGLTSRLCPATCR-GRGRGLAR 193
R P P R+ RR +RA+ + T R C + CR GR G
Sbjct: 93 C--------RANAPAPARNPRRKEPRRQSRATGK----SARTRRACASPCRPGRHCGPET 140
Query: 194 AQATHIPLSGHSRGIQTRPSSTPSPPGVLGKDTQPPSL 231
A+ PL+G + R S P PP G D +P L
Sbjct: 141 ARRPR-PLAGTTFCGGARVLSNP-PPSGSGGDARPSPL 176
>gi|239747641 PREDICTED: hypothetical protein XP_002347916 [Homo
sapiens]
Length = 193
Score = 35.4 bits (80), Expect = 0.050
Identities = 47/157 (29%), Positives = 57/157 (36%), Gaps = 22/157 (14%)
Query: 69 SGVWDKEAALHRAASESHGDRAACRREEARSWPASATRAPAAPPSASRPTRGGTRHRSRT 128
SG KE +AA + +R RS P A R P SR R
Sbjct: 42 SGAEGKELLAAQAAHRPRQQQRQQQRPRPRS-PDPAARGQHVPELRSRKPGPAARTE--- 97
Query: 129 LYCPLDQKQWPSRKRERPRLPPP----PGSRKSRLRRWARASPHPGELAGLTSRLCPATC 184
+ R + P LPPP PG+R R RA P P AG R P
Sbjct: 98 -----EGGDVTGRPWQPPLLPPPGVPTPGNRGGERRGERRAPPRP---AG-APRGSPMAA 148
Query: 185 RGRGRGLARAQATHIPLSGHSRGIQTRP-SSTPSPPG 220
RGR RG A A L + + +P S +PPG
Sbjct: 149 RGRARGEAEPPA----LGAGACDSRNQPDSQRTAPPG 181
>gi|239743072 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 35.4 bits (80), Expect = 0.050
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 83 SESHGDRAACRREEARSWPASA------TRAPAAPPSASRPTRGGTRHRSRTLYCPLDQK 136
S GDR + RR RSW SA + P P ++S RG +S P +
Sbjct: 694 SARKGDRRSARRGGPRSWRPSARASWVRSTTPRGPEASSPRARGSFLPKSGGGSPPRPAR 753
Query: 137 Q--WPSRKRE----RPRLPPPPGSRKSRLRRW-ARASPHPGELA 173
PSR E P PPPG R R+ ++SP PG A
Sbjct: 754 SLAGPSRDDEPLAGAPEEWPPPGLSSRRAPRFLIKSSPAPGRRA 797
>gi|239508718 PREDICTED: hypothetical protein [Homo sapiens]
Length = 837
Score = 35.4 bits (80), Expect = 0.050
Identities = 34/104 (32%), Positives = 43/104 (41%), Gaps = 13/104 (12%)
Query: 83 SESHGDRAACRREEARSWPASA------TRAPAAPPSASRPTRGGTRHRSRTLYCPLDQK 136
S GDR + RR RSW SA + P P ++S RG +S P +
Sbjct: 694 SARKGDRRSARRGGPRSWRPSARASWVRSTTPRGPEASSPRARGSFLPKSGGGSPPRPAR 753
Query: 137 Q--WPSRKRE----RPRLPPPPGSRKSRLRRW-ARASPHPGELA 173
PSR E P PPPG R R+ ++SP PG A
Sbjct: 754 SLAGPSRDDEPLAGAPEEWPPPGLSSRRAPRFLIKSSPAPGRRA 797
>gi|116284398 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.0 bits (79), Expect = 0.065
Identities = 43/147 (29%), Positives = 50/147 (34%), Gaps = 29/147 (19%)
Query: 101 PASATRAPAAPPSASR-------PTRGGT----RHRSRTLYCPLDQKQWPSRKRERPRLP 149
P+++++AP PP SR P+ G R R L PS R P LP
Sbjct: 300 PSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGP-LP 358
Query: 150 PPPGSRKSRL------RRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSG 203
PPP R R P P G TSR PAT + L P SG
Sbjct: 359 PPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ-----LPSRSGVDSPRSG 413
Query: 204 HSRGIQTRPSSTPSPPGVLGKDTQPPS 230
RP P P PPS
Sbjct: 414 ------PRPPLPPDRPSAGAPPPPPPS 434
>gi|38373695 WAS/WASL interacting protein family, member 1 [Homo
sapiens]
Length = 503
Score = 35.0 bits (79), Expect = 0.065
Identities = 43/147 (29%), Positives = 50/147 (34%), Gaps = 29/147 (19%)
Query: 101 PASATRAPAAPPSASR-------PTRGGT----RHRSRTLYCPLDQKQWPSRKRERPRLP 149
P+++++AP PP SR P+ G R R L PS R P LP
Sbjct: 300 PSASSQAPPPPPPPSRPGPPPLPPSSSGNDETPRLPQRNLSLSSSTPPLPSPGRSGP-LP 358
Query: 150 PPPGSRKSRL------RRWARASPHPGELAGLTSRLCPATCRGRGRGLARAQATHIPLSG 203
PPP R R P P G TSR PAT + L P SG
Sbjct: 359 PPPSERPPPPVRDPPGRSGPLPPPPPVSRNGSTSRALPATPQ-----LPSRSGVDSPRSG 413
Query: 204 HSRGIQTRPSSTPSPPGVLGKDTQPPS 230
RP P P PPS
Sbjct: 414 ------PRPPLPPDRPSAGAPPPPPPS 434
>gi|188528648 tenascin XB isoform 1 precursor [Homo sapiens]
Length = 4242
Score = 35.0 bits (79), Expect = 0.065
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 177 SRLCPATCRGRGRGLARAQATHIPLSGHSRGIQTRPSSTPSPPG 220
+R+CPA CRGRGR + H+ G G Q P ++ P G
Sbjct: 649 TRMCPADCRGRGRCVQGVCLCHVGYGGEDCG-QEEPPASACPGG 691
Score = 28.9 bits (63), Expect = 4.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 177 SRLCPATCRGRGRGLARAQATHIPLSGHSRGIQTRP 212
SR CP CRGRGR + SG G+++ P
Sbjct: 432 SRACPRDCRGRGRCENGVCVCNAGYSGEDCGVRSCP 467
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.129 0.410
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,317,697
Number of Sequences: 37866
Number of extensions: 675842
Number of successful extensions: 4632
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 317
Number of HSP's that attempted gapping in prelim test: 4274
Number of HSP's gapped (non-prelim): 612
length of query: 258
length of database: 18,247,518
effective HSP length: 100
effective length of query: 158
effective length of database: 14,460,918
effective search space: 2284825044
effective search space used: 2284825044
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.