Guide to the Human Genome
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Name: LOC100291750 Sequence: fasta or formatted (258aa) NCBI GI: 239753555
Description:

PREDICTED: hypothetical protein XP_002345695

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.2         29           2
 C cysteine            2.3          6           1
 D aspartate           3.1          8           1
 E glutamate           4.7         12           2
 F phenylalanine       2.7          7           1
 G glycine             5.8         15           2
 H histidine           4.3         11           1
 I isoleucine          2.3          6           1
 K lysine              3.5          9           2
 L leucine             8.1         21           2
 M methionine          1.6          4           1
 N asparagine          0.4          1           1
 P proline             9.7         25           4
 Q glutamine           3.1          8           1
 R arginine           13.2         34           2
 S serine             10.9         28           2
 T threonine           8.1         21           2
 V valine              2.3          6           1
 W tryptophan          2.3          6           1
 Y tyrosine            0.4          1           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002345695 
FLJ31945              0.037   PREDICTED: hypothetical protein 
SFRS16                0.035   splicing factor, arginine/serine-rich 16 
SRRM1                 0.035   serine/arginine repetitive matrix 1 
PAX1                  0.033   paired box 1 
DACT3                 0.031   thymus expressed gene 3-like 
SFRS2                 0.029   splicing factor, arginine/serine-rich 2 
B4GALNT4              0.029   beta 1,4-N-acetylgalactosaminyltransferase-transfera...
LOC100293249          0.028   PREDICTED: similar to hCG2040393 
LOC100291245          0.028   PREDICTED: hypothetical protein XP_002347031 
LOC100287002          0.028   PREDICTED: hypothetical protein XP_002343745 
LOC100287846          0.028   PREDICTED: hypothetical protein XP_002342883 
LOC100128127          0.026   PREDICTED: hypothetical protein 
LOC100128127          0.026   PREDICTED: hypothetical protein 
LOC100128127          0.026   PREDICTED: hypothetical protein 
LOC100291061          0.024   PREDICTED: hypothetical protein XP_002348193 
LOC100287602          0.024   PREDICTED: hypothetical protein XP_002343855 
FLJ37078              0.024   hypothetical protein LOC222183 
ZNF598                0.024   zinc finger protein 598 
LOC100287063          0.024   PREDICTED: hypothetical protein 
FLJ31945              0.022   PREDICTED: hypothetical protein 
FLJ31945              0.022   PREDICTED: hypothetical protein 
LOC728317             0.022   PREDICTED: hypothetical protein 
LOC731282             0.020   PREDICTED: hypothetical protein 
LOC100290263          0.020   PREDICTED: hypothetical protein XP_002347916 
LOC100133305          0.020   PREDICTED: hypothetical protein 
LOC100133305          0.020   PREDICTED: hypothetical protein 
WIPF1                 0.020   WAS/WASL interacting protein family, member 1 [Homo...
WIPF1                 0.020   WAS/WASL interacting protein family, member 1 
TNXB                  0.020   tenascin XB isoform 1 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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