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Search of human proteins with 239753208
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239753208 PREDICTED: similar to anaphase promoting complex
subunit 1 [Homo sapiens]
(331 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239753208 PREDICTED: similar to anaphase promoting complex su... 659 0.0
gi|12056971 anaphase promoting complex subunit 1 [Homo sapiens] 573 e-164
gi|46359075 zinc finger protein 423 [Homo sapiens] 38 0.014
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 38 0.014
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 38 0.014
gi|148612879 polyhomeotic like 3 [Homo sapiens] 36 0.042
gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2... 36 0.054
gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1... 36 0.054
gi|9558733 transformer-2 alpha [Homo sapiens] 35 0.071
gi|5901962 MYST histone acetyltransferase 2 [Homo sapiens] 34 0.16
gi|31415878 early B-cell factor [Homo sapiens] 34 0.16
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 34 0.21
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 34 0.21
gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Hom... 33 0.27
gi|163792208 Rho guanine exchange factor 16 [Homo sapiens] 33 0.27
gi|6631100 natural killer-tumor recognition sequence [Homo sapiens] 33 0.35
gi|189491742 ataxin 7 isoform b [Homo sapiens] 33 0.46
gi|4506797 ataxin 7 isoform a [Homo sapiens] 33 0.46
gi|110825974 ADAM metallopeptidase with thrombospondin type 1 mo... 32 0.60
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 32 0.78
gi|157502184 kinesin family member 6 [Homo sapiens] 32 0.78
gi|55741447 pleckstrin homology domain containing, family H (wit... 32 0.78
gi|18379328 WW domain-containing adapter with a coiled-coil regi... 32 1.0
gi|18379332 WW domain-containing adapter with a coiled-coil regi... 32 1.0
gi|9945320 cyclin L1 [Homo sapiens] 32 1.0
gi|133922600 splicing factor, arginine/serine-rich 16 [Homo sapi... 32 1.0
gi|154146223 splicing factor, arginine/serine-rich 130 [Homo sap... 32 1.0
gi|115647981 glutamine and serine rich 1 [Homo sapiens] 32 1.0
gi|154146193 splicing factor, arginine/serine-rich 130 [Homo sap... 32 1.0
gi|224548936 hypothetical protein LOC100170229 [Homo sapiens] 31 1.3
>gi|239753208 PREDICTED: similar to anaphase promoting complex
subunit 1 [Homo sapiens]
Length = 331
Score = 659 bits (1701), Expect = 0.0
Identities = 331/331 (100%), Positives = 331/331 (100%)
Query: 1 MFSMLHPLDEITPLVCKSGSLFGSLRVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVW 60
MFSMLHPLDEITPLVCKSGSLFGSLRVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVW
Sbjct: 1 MFSMLHPLDEITPLVCKSGSLFGSLRVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVW 60
Query: 61 TLRRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQS 120
TLRRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQS
Sbjct: 61 TLRRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQS 120
Query: 121 RSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNS 180
RSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNS
Sbjct: 121 RSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNS 180
Query: 181 KSNGFFLAPETEPIVPELCIDHLWTETITNISCVKFQESNDKTQLIFVSVTNIPAKDAAP 240
KSNGFFLAPETEPIVPELCIDHLWTETITNISCVKFQESNDKTQLIFVSVTNIPAKDAAP
Sbjct: 181 KSNGFFLAPETEPIVPELCIDHLWTETITNISCVKFQESNDKTQLIFVSVTNIPAKDAAP 240
Query: 241 VEKIDTMLVLEGSGNLVLYTGVVRVGKVFIPGLPAPSLTMSNTMPQPSTPLDGVSAPKPL 300
VEKIDTMLVLEGSGNLVLYTGVVRVGKVFIPGLPAPSLTMSNTMPQPSTPLDGVSAPKPL
Sbjct: 241 VEKIDTMLVLEGSGNLVLYTGVVRVGKVFIPGLPAPSLTMSNTMPQPSTPLDGVSAPKPL 300
Query: 301 SKLLGSLDEGSHNRVELMYCLHKKLEFKKDS 331
SKLLGSLDEGSHNRVELMYCLHKKLEFKKDS
Sbjct: 301 SKLLGSLDEGSHNRVELMYCLHKKLEFKKDS 331
>gi|12056971 anaphase promoting complex subunit 1 [Homo sapiens]
Length = 1944
Score = 573 bits (1478), Expect = e-164
Identities = 298/341 (87%), Positives = 301/341 (88%), Gaps = 32/341 (9%)
Query: 1 MFSMLHPLDEITPLVCKSGSLFGSLRVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVW 60
MFSMLHPLDEITPLVCKSGSLFGS RVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVW
Sbjct: 210 MFSMLHPLDEITPLVCKSGSLFGSSRVQYVVDHAMKIVFLNTDPSIVMTYDAVQNVHSVW 269
Query: 61 TLRRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQS 120
TLRRVKSEEENVVLKFSE GGTP+NVATSSSLTAHLRSLSKGDSPV SPF+NYSSIHSQS
Sbjct: 270 TLRRVKSEEENVVLKFSEQGGTPQNVATSSSLTAHLRSLSKGDSPVTSPFQNYSSIHSQS 329
Query: 121 RSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNS 180
RSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNS
Sbjct: 330 RSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNS 389
Query: 181 KSNGFFLAPETEPIVPELCIDHLWTETITNIS---------------------------- 212
SNG FLAPETEPIVPELCIDHLWTETITNI
Sbjct: 390 NSNGSFLAPETEPIVPELCIDHLWTETITNIREKNSQASKVFITSDLCGQKFLCFLVESQ 449
Query: 213 ----CVKFQESNDKTQLIFVSVTNIPAKDAAPVEKIDTMLVLEGSGNLVLYTGVVRVGKV 268
CVKFQESNDKTQLIF SVTNIPAKDAAPVEKIDTMLVLEGSGNLVLYTGVVRVGKV
Sbjct: 450 LQLRCVKFQESNDKTQLIFGSVTNIPAKDAAPVEKIDTMLVLEGSGNLVLYTGVVRVGKV 509
Query: 269 FIPGLPAPSLTMSNTMPQPSTPLDGVSAPKPLSKLLGSLDE 309
FIPGLPAPSLTMSNTMP+PSTPLDGVS PKPLSKLLGSLDE
Sbjct: 510 FIPGLPAPSLTMSNTMPRPSTPLDGVSTPKPLSKLLGSLDE 550
>gi|46359075 zinc finger protein 423 [Homo sapiens]
Length = 1284
Score = 37.7 bits (86), Expect = 0.014
Identities = 35/109 (32%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 88 TSSSLTAHLRSL------SKGDSPVISPFRNYSSIHSQSRSTSSP---SLHSRSPSI-SN 137
T SSLT H++ +K +SPV+ P +++ ++S T+SP S+ + I N
Sbjct: 528 TESSLTEHIQQAHCSVGSAKLESPVVQPTQSFMEVYSCPYCTNSPIFGSILKLTKHIKEN 587
Query: 138 MAALSRAHSPALGVHSFSGVQRFNISSHNQ--SPKRHSISHSPNSKSNG 184
+ AHS S ++ +SS + SPKR +S S NS SNG
Sbjct: 588 HKNIPLAHSKK------SKAEQSPVSSDVEVSSPKRQRLSASANSISNG 630
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 37.7 bits (86), Expect = 0.014
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 89 SSSLTAHLRSLSKGDSPVISPFRNYS----SIHSQSRSTSSPSLHSRSPSISNMAALSRA 144
S S ++H RS S+ SP S R+ S S SQSRS SS SRS S + SR+
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG-SKSRSSSRS 262
Query: 145 HSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNSKSNG 184
H S ++ + SS + SP+R+ S S+G
Sbjct: 263 H------RGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 37.7 bits (86), Expect = 0.014
Identities = 35/100 (35%), Positives = 48/100 (48%), Gaps = 11/100 (11%)
Query: 89 SSSLTAHLRSLSKGDSPVISPFRNYS----SIHSQSRSTSSPSLHSRSPSISNMAALSRA 144
S S ++H RS S+ SP S R+ S S SQSRS SS SRS S + SR+
Sbjct: 204 SKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRG-SKSRSSSRS 262
Query: 145 HSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNSKSNG 184
H S ++ + SS + SP+R+ S S+G
Sbjct: 263 H------RGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSG 296
>gi|148612879 polyhomeotic like 3 [Homo sapiens]
Length = 995
Score = 36.2 bits (82), Expect = 0.042
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 14/158 (8%)
Query: 25 LRVQYVV-DHAMKIVFLNTDPSIVMTYDAVQNVHSVWTLRRVKSEEENVVLKFSEHGGTP 83
LR Q ++ A + + +D +V + + + ++ + + + + S G P
Sbjct: 187 LRAQMLIFTPATTVAAVQSDIPVVSSSSSSSCQSAATQVQNLTLRSQKLGVLSSSQNGPP 246
Query: 84 RNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSR 143
++ + + SLT + S + + S ++ SPSL SRS +++ +++ +
Sbjct: 247 KSTSQTQSLTICHNKTTVTSSKISQRDPSPES----NKKGESPSLESRSTAVTRTSSIHQ 302
Query: 144 AHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNSK 181
+PA S+S +Q ++ H Q P HSP SK
Sbjct: 303 LIAPA----SYSPIQPHSLIKHQQIP-----LHSPPSK 331
>gi|157817073 Cdc2-related kinase, arginine/serine-rich isoform 2
[Homo sapiens]
Length = 1481
Score = 35.8 bits (81), Expect = 0.054
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 8/195 (4%)
Query: 50 YDAVQNVHSVWTLRRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISP 109
Y Q S ++ RR S E + +S +P SSS RSLS+ P
Sbjct: 295 YSRRQRSVSPYSRRRSSSYERSG--SYSGRSPSPYGRRRSSSPFLSKRSLSRSPLPSRKS 352
Query: 110 FRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSP 169
++ S + SR +SS S RS S S +++S P ++S G + +
Sbjct: 353 MKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLP---LNSSLGAELSRKKKERAAA 409
Query: 170 KRHSISHSPNSKSNGFFLAPETEPIVPELCIDHLWTETITNISCVKFQESNDKTQLIFVS 229
+ SK + FL P E E L ++ + VK ++S T+L+ V+
Sbjct: 410 AAAAKMDGKESKGSPVFL-PRKENSSVEAKDSGLESKKLPR--SVKLEKSAPDTELVNVT 466
Query: 230 VTNIPAKDAAPVEKI 244
N K+++ K+
Sbjct: 467 HLNTEVKNSSDTGKV 481
>gi|157817023 Cdc2-related kinase, arginine/serine-rich isoform 1
[Homo sapiens]
Length = 1490
Score = 35.8 bits (81), Expect = 0.054
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 8/195 (4%)
Query: 50 YDAVQNVHSVWTLRRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISP 109
Y Q S ++ RR S E + +S +P SSS RSLS+ P
Sbjct: 295 YSRRQRSVSPYSRRRSSSYERSG--SYSGRSPSPYGRRRSSSPFLSKRSLSRSPLPSRKS 352
Query: 110 FRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSP 169
++ S + SR +SS S RS S S +++S P ++S G + +
Sbjct: 353 MKSRSRSPAYSRHSSSHSKKKRSSSRSRHSSISPVRLP---LNSSLGAELSRKKKERAAA 409
Query: 170 KRHSISHSPNSKSNGFFLAPETEPIVPELCIDHLWTETITNISCVKFQESNDKTQLIFVS 229
+ SK + FL P E E L ++ + VK ++S T+L+ V+
Sbjct: 410 AAAAKMDGKESKGSPVFL-PRKENSSVEAKDSGLESKKLPR--SVKLEKSAPDTELVNVT 466
Query: 230 VTNIPAKDAAPVEKI 244
N K+++ K+
Sbjct: 467 HLNTEVKNSSDTGKV 481
>gi|9558733 transformer-2 alpha [Homo sapiens]
Length = 282
Score = 35.4 bits (80), Expect = 0.071
Identities = 33/90 (36%), Positives = 40/90 (44%), Gaps = 7/90 (7%)
Query: 98 SLSKGDSPVISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSR----AHSPALGVHS 153
S S+ SP +P R S S SRS S S HS S S S + SR +H S
Sbjct: 14 SRSQSKSPTGTPARVKSESRSGSRSPSRVSKHSESHSRSRSKSRSRSRRHSHRRYTRSRS 73
Query: 154 FSGVQRFNISSHNQSP---KRHSISHSPNS 180
S R S + +P +R S SHSP S
Sbjct: 74 HSHSHRRRSRSRSYTPEYRRRRSRSHSPMS 103
>gi|5901962 MYST histone acetyltransferase 2 [Homo sapiens]
Length = 611
Score = 34.3 bits (77), Expect = 0.16
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Query: 77 SEHGGTPRNVATSSSLTAHLRSLSKGDSPV--ISPFRNYSSIHSQSRSTSSPSLHSR-SP 133
SE GT R A + +A L S+ SPV + F +S R T S + +P
Sbjct: 30 SESDGTSRRSARVTRSSARLSQSSQDSSPVRNLQSFGTEEPAYSTRRVTRSQQQPTPVTP 89
Query: 134 SISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNSKSN 183
+ + S V FS + N + H++SP R ++P+S+S+
Sbjct: 90 KKYPLRQTRSSGSETEQVVDFSDRETKNTADHDESPPRTPTGNAPSSESD 139
>gi|31415878 early B-cell factor [Homo sapiens]
Length = 591
Score = 34.3 bits (77), Expect = 0.16
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 124 SSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNSKSN 183
S P H++ P+++N + H+ +GV+SFSG N+S +Q+ + +S + +
Sbjct: 413 SVPRNHNQLPALANTSV----HAGMMGVNSFSGQLAVNVSEASQATNQGFTRNSSSVSPH 468
Query: 184 GFFLAPETEP 193
G+ P T P
Sbjct: 469 GY--VPSTTP 476
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 33.9 bits (76), Expect = 0.21
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 63 RRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQSRS 122
+R S + ++ + R+ + + S RS+ + S ISP R + +SR+
Sbjct: 1907 KRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRT 1966
Query: 123 TS----SPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQR--FNIS----SHNQSPKRH 172
S +PS SR+PS + R+ +P+ S S V+R F+IS +++P R
Sbjct: 1967 PSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 2026
Query: 173 SISHSP 178
S SP
Sbjct: 2027 RFSRSP 2032
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 33.9 bits (76), Expect = 0.21
Identities = 34/126 (26%), Positives = 58/126 (46%), Gaps = 10/126 (7%)
Query: 63 RRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQSRS 122
+R S + ++ + R+ + + S RS+ + S ISP R + +SR+
Sbjct: 1907 KRSSSRDNRKTVRARSRTPSRRSRSHTPSRRRRSRSVGRRRSFSISPSRRSRTPSRRSRT 1966
Query: 123 TS----SPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQR--FNIS----SHNQSPKRH 172
S +PS SR+PS + R+ +P+ S S V+R F+IS +++P R
Sbjct: 1967 PSRRSRTPSRRSRTPSRRSRTPSRRSRTPSRRRRSRSVVRRRSFSISPVRLRRSRTPLRR 2026
Query: 173 SISHSP 178
S SP
Sbjct: 2027 RFSRSP 2032
>gi|4506401 v-raf-1 murine leukemia viral oncogene homolog 1 [Homo
sapiens]
Length = 648
Score = 33.5 bits (75), Expect = 0.27
Identities = 29/101 (28%), Positives = 44/101 (43%), Gaps = 1/101 (0%)
Query: 91 SLTAHLRSLSKGDSPVISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALG 150
SLT S PV S R YS+ H+ + +TSSPS + H +
Sbjct: 211 SLTMRRMRESVSRMPVSSQHR-YSTPHAFTFNTSSPSSEGSLSQRQRSTSTPNVHMVSTT 269
Query: 151 VHSFSGVQRFNISSHNQSPKRHSISHSPNSKSNGFFLAPET 191
+ S + I SH++S ++S SPN+ S + P+T
Sbjct: 270 LPVDSRMIEDAIRSHSESASPSALSSSPNNLSPTGWSQPKT 310
>gi|163792208 Rho guanine exchange factor 16 [Homo sapiens]
Length = 709
Score = 33.5 bits (75), Expect = 0.27
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 296 APKPLSKLLGSLDEGSHN--RVELMYCLHKKLEFKK 329
A K +SKL+ +EG+H R+E MY LH +L+F K
Sbjct: 454 ALKAISKLVRQCNEGAHRMERMEQMYTLHTQLDFSK 489
>gi|6631100 natural killer-tumor recognition sequence [Homo sapiens]
Length = 1462
Score = 33.1 bits (74), Expect = 0.35
Identities = 38/125 (30%), Positives = 64/125 (51%), Gaps = 17/125 (13%)
Query: 63 RRVKSEE--ENVVLKFSEHGG--TPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHS 118
+R K+ E ++ K+S+ +PR+ + SS ++ RS ++ R+ +S HS
Sbjct: 666 KREKNSESDQSTYSKYSDRSSESSPRSRSRSSRSRSYSRSYTRS--------RSLASSHS 717
Query: 119 QSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSP 178
+SRS SS S HSR+ S+ + SR+ S + S G R S K++S+SH
Sbjct: 718 RSRSPSSRS-HSRN-KYSDHSQCSRS-SSYTSISSDDG--RRAKRRLRSSGKKNSVSHKK 772
Query: 179 NSKSN 183
+S S+
Sbjct: 773 HSSSS 777
Score = 29.3 bits (64), Expect = 5.1
Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 4/90 (4%)
Query: 97 RSLSKGDSPVISPFRNYSSIHSQSRSTSSPSLH-SRSPSISNMAALSRAHSPALGVHSFS 155
RS SK ++ R+ S HS+SRS SS S + SRS S S S+
Sbjct: 1316 RSRSKSETKSRHRTRSVSYSHSRSRSRSSTSSYRSRSYSRSRSRGWYSRGRTRSRSSSYR 1375
Query: 156 GVQRFNISSHNQSPKRHSISHSPNSKSNGF 185
+ SS ++S S S+ P+S+S +
Sbjct: 1376 SYKSHRTSSRSRS---RSSSYDPHSRSRSY 1402
>gi|189491742 ataxin 7 isoform b [Homo sapiens]
Length = 945
Score = 32.7 bits (73), Expect = 0.46
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 84 RNVATSSSLTAHLRSLSKGDSPVIS----PFRNYSSIHSQSRSTSSPSLHSRSPSISNMA 139
R V++SSS + LS S +S ++ S+ + S +S + + S S S +
Sbjct: 644 RQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTSGGS 703
Query: 140 ALSRAHSPALGVHSFSGVQRFNISSHN-QSPKRHSISHS 177
R +S L VHS S + SSH+ +S +++ ++HS
Sbjct: 704 GKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKNCVAHS 742
>gi|4506797 ataxin 7 isoform a [Homo sapiens]
Length = 892
Score = 32.7 bits (73), Expect = 0.46
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 5/99 (5%)
Query: 84 RNVATSSSLTAHLRSLSKGDSPVIS----PFRNYSSIHSQSRSTSSPSLHSRSPSISNMA 139
R V++SSS + LS S +S ++ S+ + S +S + + S S S +
Sbjct: 644 RQVSSSSSSPSTPSGLSSVPSSPMSRKPQKLKSSKSLRPKESSGNSTNCQNASSSTSGGS 703
Query: 140 ALSRAHSPALGVHSFSGVQRFNISSHN-QSPKRHSISHS 177
R +S L VHS S + SSH+ +S +++ ++HS
Sbjct: 704 GKKRKNSSPLLVHSSSSSSSSSSSSHSMESFRKNCVAHS 742
>gi|110825974 ADAM metallopeptidase with thrombospondin type 1 motif,
2 isoform 1 preproprotein [Homo sapiens]
Length = 1211
Score = 32.3 bits (72), Expect = 0.60
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 268 VFIPGLPAPSLTMSNTMPQPSTPLDGVSAPKPLSKLLGSLDEGSHNRVELMYCLH 322
VF+P LP P++ M P PSTPL+ P S + D N V+ Y +H
Sbjct: 1118 VFMPTLPVPTVAM-EVRPSPSTPLE---VPLNASSTNATEDHPETNAVDEPYKIH 1168
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 32.0 bits (71), Expect = 0.78
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 63 RRVKSEEENVVLKFS--EHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQS 120
R V E E+ + S E G N T+ + RS SK + S R+ S S++
Sbjct: 409 RSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSESRSRSKSASKT 468
Query: 121 RSTSSPSLHSRSPSISNMAALSRAHS 146
RS S SRS S S + SR+HS
Sbjct: 469 RSRSKS--RSRSASRSPSRSRSRSHS 492
Score = 31.6 bits (70), Expect = 1.0
Identities = 30/87 (34%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
Query: 97 RSLSKGDSPVISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALG-VHSFS 155
RS S+ S S R+ S S+SRS SS S HS+S S S + SR+ S + S S
Sbjct: 183 RSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRS 242
Query: 156 GVQRFNISSHNQSPKRHSISHSPNSKS 182
++ S +S R + SKS
Sbjct: 243 KKEKSRSPSKEKSRSRSHSAGKSRSKS 269
Score = 28.9 bits (63), Expect = 6.6
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Query: 103 DSPVISPFRNYSSI--HSQSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRF 160
D P R+YS HS+SRS S S SRS S S+ ++ S++ S + R
Sbjct: 175 DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS 234
Query: 161 NISSHNQSPKRHSISHS 177
S ++S K S S S
Sbjct: 235 RSQSRSRSKKEKSRSPS 251
>gi|157502184 kinesin family member 6 [Homo sapiens]
Length = 814
Score = 32.0 bits (71), Expect = 0.78
Identities = 30/123 (24%), Positives = 49/123 (39%), Gaps = 15/123 (12%)
Query: 44 PSIVMTYDAVQNVH-SVWTLRRVKSEEENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKG 102
P + + D QN+H TL + +EEE + L F G T R +A + A RS
Sbjct: 170 PKVTILEDPDQNIHLKNLTLHQATTEEEALNLLFL--GDTNRMIAETPMNQASTRS---- 223
Query: 103 DSPVISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNI 162
+IH S+ S ++ + ++A R +G H + + N+
Sbjct: 224 --------HCIFTIHLSSKEPGSATVRHAKLHLVDLAGSERVAKTGVGGHLLTEAKYINL 275
Query: 163 SSH 165
S H
Sbjct: 276 SLH 278
>gi|55741447 pleckstrin homology domain containing, family H (with
MyTH4 domain) member 1 [Homo sapiens]
Length = 1364
Score = 32.0 bits (71), Expect = 0.78
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 5/104 (4%)
Query: 64 RVKSEEENVVLKFSEHGGTPRNVATSS--SLTAHLRSLSKGDSPVISPFRNYSSIHSQ-- 119
R +S EE ++ E +N S +L A L + G+ P P +SS S+
Sbjct: 367 RARSREEPEKMEMEEPPPAGKNEERESPKALGAELEEVELGNKPPTPPLHQFSSWESRIY 426
Query: 120 SRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNIS 163
+ +TS L SP SN A + + + SFSG+ N++
Sbjct: 427 AVATSGMRLSDMSPR-SNTACCASSPPALVSPGSFSGLVYKNVT 469
>gi|18379328 WW domain-containing adapter with a coiled-coil region
isoform 1 [Homo sapiens]
Length = 647
Score = 31.6 bits (70), Expect = 1.0
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 117 HSQSRSTSSPS----LHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRH 172
H + R PS + RS S N + S HS A VH+ +R +S+ SP+ +
Sbjct: 43 HEKMRDAGDPSPPNKMLRRSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSY--SPQEN 100
Query: 173 SISHSPNSKSNGFFLAPETEP 193
S +HS SN P P
Sbjct: 101 SHNHSALHSSNSHSSNPSNNP 121
>gi|18379332 WW domain-containing adapter with a coiled-coil region
isoform 3 [Homo sapiens]
Length = 544
Score = 31.6 bits (70), Expect = 1.0
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 117 HSQSRSTSSPS----LHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSHNQSPKRH 172
H + R PS + RS S N + S HS A VH+ +R +S+ SP+ +
Sbjct: 43 HEKMRDAGDPSPPNKMLRRSDSPENKYSDSTGHSKAKNVHTHRVRERDGGTSY--SPQEN 100
Query: 173 SISHSPNSKSNGFFLAPETEP 193
S +HS SN P P
Sbjct: 101 SHNHSALHSSNSHSSNPSNNP 121
>gi|9945320 cyclin L1 [Homo sapiens]
Length = 526
Score = 31.6 bits (70), Expect = 1.0
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 12/82 (14%)
Query: 108 SPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHS-------FSGVQRF 160
SP+ +SR++ S S SRS + S SR+H+P ++ +S R
Sbjct: 374 SPYNGVRKDSKRSRNSRSAS-RSRSRTRSR----SRSHTPRRHYNNRRSRSGTYSSRSRS 428
Query: 161 NISSHNQSPKRHSISHSPNSKS 182
SH++SP+RH SP+ K+
Sbjct: 429 RSRSHSESPRRHHNHGSPHLKA 450
>gi|133922600 splicing factor, arginine/serine-rich 16 [Homo
sapiens]
Length = 674
Score = 31.6 bits (70), Expect = 1.0
Identities = 24/62 (38%), Positives = 31/62 (50%)
Query: 89 SSSLTAHLRSLSKGDSPVISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPA 148
SSS + SLS S ++ R++S SQSRS S S SPS + A SPA
Sbjct: 490 SSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREKLTRPAASPA 549
Query: 149 LG 150
+G
Sbjct: 550 VG 551
>gi|154146223 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 31.6 bits (70), Expect = 1.0
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 106 VISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSH 165
V+ P + + Q RS S S S S S ++ S S + S SG R SS
Sbjct: 492 VLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSS-SYSSSSGSSR--TSSR 548
Query: 166 NQSPKR---HSISHSPNSKS 182
+ SPKR HS S SP K+
Sbjct: 549 SSSPKRKKRHSRSRSPTIKA 568
>gi|115647981 glutamine and serine rich 1 [Homo sapiens]
Length = 1735
Score = 31.6 bits (70), Expect = 1.0
Identities = 32/128 (25%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 87 ATSSSLTAHLRSLSKGDS------PVISPFRNYSSIHS----QSRSTSSPSLHSRSPSIS 136
A+ SLT SLS + P SP +NY S+HS Q++ +SSP P++
Sbjct: 461 ASGESLTLTAPSLSYSSASRAQNLPDSSPTQNYISMHSSQNVQTQESSSPQSQKFLPAVQ 520
Query: 137 NMAALSRAHSPALGVHSFSGVQRFNISS---HNQSPKRHSISHSPNSKSNGFFLAPETEP 193
+ + S H L + NI+S + + ++ P+SK F E +
Sbjct: 521 SSSFASSTHCQTL---------QNNITSPDPKSYAERKLDSDVYPSSKQEDGFPMQELQV 571
Query: 194 IVPELCID 201
+ P+ ++
Sbjct: 572 LQPQASLE 579
Score = 31.2 bits (69), Expect = 1.3
Identities = 35/136 (25%), Positives = 59/136 (43%), Gaps = 15/136 (11%)
Query: 70 ENVVLKFSEHGGTPRNVATSSSLTAHLRSLSKGDSPVISPFRNYSSIHSQSRSTSSPSLH 129
EN L +S + + T+ + A R LS +S ++YSS HSQ S S +
Sbjct: 388 ENQTLNYSSNQQEVLSSVTNENYPAQTRDLSS-----VSQSQSYSSGHSQGLSPVSQTQV 442
Query: 130 SRSPSISNMAALSRAHSPALGVH--------SFSGVQRFNISSHNQSPKRHSIS-HSPNS 180
S S ++ +S + S A G S+S R + + SP ++ IS HS +
Sbjct: 443 SYSSQSQVLSVVSLSESYASGESLTLTAPSLSYSSASRAQ-NLPDSSPTQNYISMHSSQN 501
Query: 181 KSNGFFLAPETEPIVP 196
+P+++ +P
Sbjct: 502 VQTQESSSPQSQKFLP 517
>gi|154146193 splicing factor, arginine/serine-rich 130 [Homo
sapiens]
Length = 805
Score = 31.6 bits (70), Expect = 1.0
Identities = 28/80 (35%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 106 VISPFRNYSSIHSQSRSTSSPSLHSRSPSISNMAALSRAHSPALGVHSFSGVQRFNISSH 165
V+ P + + Q RS S S S S S ++ S S + S SG R SS
Sbjct: 492 VLEPKKEHKEKEKQGRSRSGSSSSGSSSSNSRTSSTSSTVSSS-SYSSSSGSSR--TSSR 548
Query: 166 NQSPKR---HSISHSPNSKS 182
+ SPKR HS S SP K+
Sbjct: 549 SSSPKRKKRHSRSRSPTIKA 568
>gi|224548936 hypothetical protein LOC100170229 [Homo sapiens]
Length = 715
Score = 31.2 bits (69), Expect = 1.3
Identities = 23/66 (34%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 117 HSQSRSTSSPSLHSRSPSISNMAALSRAHSPAL-GVHSFSGVQRFNISSHNQSPKRHSIS 175
HS+SRS + S +SR + S A SR+ +P+ G HS S SS P + ++
Sbjct: 593 HSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQS-----RTSSKESDPSQSTVP 647
Query: 176 HSPNSK 181
SP+ K
Sbjct: 648 RSPDWK 653
Score = 29.3 bits (64), Expect = 5.1
Identities = 31/103 (30%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
Query: 84 RNVATSSSLTAHLRSLSKGDSPVISPFRNYSS--IHSQSRSTSSPSLHSRSPSISNMAAL 141
R +SS H RS S S R S HS+SR+ S HS+S + S +
Sbjct: 582 RQSRSSSEERDHSRSRSPNKQSGYSRPRASSKEKAHSRSRTPSKEGNHSQSRTSSKESDP 641
Query: 142 SRAHSPALGVHSFSGVQRFNISSHNQSPKRHSISHSPNSKSNG 184
S++ P S + ++ S N++P + S SHSP++ +G
Sbjct: 642 SQSTVPRSPDWKRSPTRTSSL-SQNRTPSKTS-SHSPSTFPSG 682
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.315 0.129 0.374
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,382,587
Number of Sequences: 37866
Number of extensions: 652011
Number of successful extensions: 2770
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 72
Number of HSP's that attempted gapping in prelim test: 2588
Number of HSP's gapped (non-prelim): 232
length of query: 331
length of database: 18,247,518
effective HSP length: 103
effective length of query: 228
effective length of database: 14,347,320
effective search space: 3271188960
effective search space used: 3271188960
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.