Guide to the Human Genome
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Name: ARHGEF16 Sequence: fasta or formatted (709aa) NCBI GI: 163792208
Description:

Rho guanine exchange factor 16

Referenced in:

Rho and Rac

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.3         52           2
 C cysteine            0.7          5           1
 D aspartate           5.1         36           3
 E glutamate           8.3         59           2
 F phenylalanine       3.5         25           2
 G glycine             5.5         39           3
 H histidine           3.0         21           3
 I isoleucine          3.4         24           1
 K lysine              5.4         38           3
 L leucine            11.6         82           3
 M methionine          2.3         16           1
 N asparagine          2.0         14           1
 P proline             5.9         42           2
 Q glutamine           6.9         49           2
 R arginine            7.8         55           2
 S serine              8.7         62           3
 T threonine           4.1         29           1
 V valine              5.8         41           2
 W tryptophan          1.0          7           1
 Y tyrosine            1.8         13           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rho guanine exchange factor 16 
SGEF                  0.352   Src homology 3 domain-containing guanine nucleotide...
NGEF                  0.217   neuronal guanine nucleotide exchange factor isoform...
NGEF                  0.217   neuronal guanine nucleotide exchange factor isoform...
ARHGEF5               0.194   rho guanine nucleotide exchange factor 5 
ARHGEF19              0.178   Rho guanine nucleotide exchange factor (GEF) 19 [Hom...
ARHGEF15              0.162   Rho guanine exchange factor 15 
ITSN2                 0.061   intersectin 2 isoform 3 
ITSN2                 0.061   intersectin 2 isoform 1 
ITSN1                 0.060   intersectin 1 isoform ITSN-l 
C9orf100              0.051   hypothetical protein LOC84904 
FGD4                  0.049   FYVE, RhoGEF and PH domain containing 4 
FGD1                  0.044   faciogenital dysplasia protein 
PLEKHG5               0.044   pleckstrin homology domain containing family G membe...
PLEKHG5               0.044   pleckstrin homology domain containing family G memb...
PLEKHG5               0.044   pleckstrin homology domain containing family G memb...
PLEKHG5               0.044   pleckstrin homology domain containing family G memb...
PLEKHG5               0.044   pleckstrin homology domain containing family G memb...
ARHGEF12              0.043   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
ARHGEF2               0.037   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF11              0.036   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.036   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
PLEKHG6               0.036   pleckstrin homology domain-containing family G memb...
PLEKHG6               0.036   pleckstrin homology domain-containing family G memb...
PLEKHG6               0.036   pleckstrin homology domain-containing family G memb...
ARHGEF1               0.036   Rho guanine nucleotide exchange factor 1 isoform 1 [...
ARHGEF1               0.036   Rho guanine nucleotide exchange factor 1 isoform 3 [...
ARHGEF1               0.036   Rho guanine nucleotide exchange factor 1 isoform 2 [...
PREX1                 0.036   phosphatidylinositol-3,4,5-trisphosphate-dependent R...
ARHGEF2               0.035   Rho/Rac guanine nucleotide exchange factor 2 isofor...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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