Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: LOC100131773 Sequence: fasta or formatted (307aa) NCBI GI: 239753093
Description:

PREDICTED: similar to hCG1782152

Not currently referenced in the text

Other entries for this name:
alt mRNA {307aa} PREDICTED: similar to hCG1782152
alt prot {591aa} PREDICTED: similar to mCG116201
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         17           2
 C cysteine            2.3          7           1
 D aspartate           4.9         15           3
 E glutamate           5.9         18           2
 F phenylalanine       5.2         16           2
 G glycine             6.8         21           2
 H histidine           1.6          5           1
 I isoleucine          4.9         15           1
 K lysine              5.9         18           2
 L leucine            11.1         34           2
 M methionine          2.3          7           1
 N asparagine          3.9         12           1
 P proline             3.9         12           1
 Q glutamine           5.2         16           2
 R arginine            6.8         21           1
 S serine              8.8         27           3
 T threonine           4.6         14           2
 V valine              6.5         20           2
 W tryptophan          2.0          6           1
 Y tyrosine            2.0          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to hCG1782152 
LOC100131773          1.000   PREDICTED: similar to hCG1782152 
LOC100131773          0.445   PREDICTED: similar to mCG116201 
LOC100130097          0.295   PREDICTED: similar to Kinesin-Like Protein family m...
KIF1B                 0.203   kinesin family member 1B isoform alpha 
KIF1B                 0.203   kinesin family member 1B isoform b 
KIF1C                 0.203   kinesin family member 1C 
KIF1A                 0.200   axonal transport of synaptic vesicles 
KIF13B                0.188   kinesin family member 13B 
KIF13A                0.186   kinesin family member 13A isoform d 
KIF13A                0.186   kinesin family member 13A isoform c 
KIF13A                0.186   kinesin family member 13A isoform b 
KIF13A                0.186   kinesin family member 13A isoform a 
KIF16B                0.183   kinesin-like motor protein C20orf23 
KIF17                 0.171   kinesin family member 17 isoform b 
KIF17                 0.171   kinesin family member 17 isoform a 
KIF14                 0.168   kinesin family member 14 
KIF3B                 0.168   kinesin family member 3B 
KIF21B                0.158   kinesin family member 21B 
KIF4B                 0.154   kinesin family member 4B 
KIF3A                 0.153   kinesin family member 3A 
KIF4A                 0.151   kinesin family member 4 
KIF18A                0.149   kinesin family member 18A 
KIF21A                0.146   kinesin family member 21A 
STARD9                0.143   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.143   PREDICTED: StAR-related lipid transfer (START) doma...
STARD9                0.143   PREDICTED: StAR-related lipid transfer (START) doma...
KIF3C                 0.143   kinesin family member 3C 
KIF18B                0.143   kinesin family member 18B 
KIF15                 0.143   kinesin family member 15 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press