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Search of human proteins with 239752579
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo
sapiens]
(240 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo ... 489 e-139
gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo ... 375 e-104
gi|239758117 PREDICTED: hypothetical protein [Homo sapiens] 332 2e-91
gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo ... 315 2e-86
gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo ... 300 1e-81
gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo ... 268 4e-72
gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo ... 245 2e-65
gi|239756562 PREDICTED: hypothetical protein [Homo sapiens] 242 2e-64
gi|239754599 PREDICTED: hypothetical protein [Homo sapiens] 229 2e-60
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens] 88 8e-18
gi|4885379 histone cluster 1, H1e [Homo sapiens] 45 7e-05
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 39 0.004
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 39 0.005
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 39 0.005
gi|148746220 spermatogenesis associated, serine-rich 2 [Homo sap... 38 0.007
gi|169207782 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|169207076 PREDICTED: hypothetical protein [Homo sapiens] 38 0.009
gi|39653317 jumonji domain containing 2D [Homo sapiens] 38 0.009
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 37 0.012
gi|239755624 PREDICTED: hypothetical protein XP_002344645 [Homo ... 37 0.015
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 37 0.020
gi|239757126 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|169206171 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|239751639 PREDICTED: hypothetical protein XP_002347942 [Homo ... 36 0.026
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|239750127 PREDICTED: hypothetical protein XP_002347282 [Homo ... 36 0.026
gi|239746151 PREDICTED: hypothetical protein XP_002344288 [Homo ... 36 0.026
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 36 0.026
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 36 0.034
gi|33188443 microfilament and actin filament cross-linker protei... 35 0.044
>gi|239752579 PREDICTED: hypothetical protein XP_002348295 [Homo
sapiens]
Length = 240
Score = 489 bits (1260), Expect = e-139
Identities = 240/240 (100%), Positives = 240/240 (100%)
Query: 1 MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG
Sbjct: 1 MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS
Sbjct: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVM 180
DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVM
Sbjct: 121 DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVM 180
Query: 181 GAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
GAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ
Sbjct: 181 GAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
>gi|239758008 PREDICTED: hypothetical protein XP_002346266 [Homo
sapiens]
Length = 316
Score = 375 bits (963), Expect = e-104
Identities = 199/264 (75%), Positives = 212/264 (80%), Gaps = 24/264 (9%)
Query: 1 MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEPNPGPRPRYLH PYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG
Sbjct: 1 MSSPVLEPNPGPRPRYLHSPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS
Sbjct: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGR------ 174
DPRHCISQDASRSGSRVCRSRPQTRG GGKK R++ + AA K+ G+ + GR
Sbjct: 121 DPRHCISQDASRSGSRVCRSRPQTRGGGGKKPRRQKDAAAGAKSRGGKKPRRGRKPRRRG 180
Query: 175 QKAAVMGAKSRGGRGKKP--QKAAAAGAKSCNG-------GGKKLGRWGKKP-------- 217
QK+ GAKSRG GKKP QK AAAGAKS G G KK GRWG++
Sbjct: 181 QKSTAAGAKSRGEGGKKPRQQKPAAAGAKSGLGDKKSRRWGRKKPGRWGQEAVAGETCGG 240
Query: 218 -GRRGQKAAVTGAKSRKKPQRRGQ 240
G++ QKAA GAKS KKP+R+ Q
Sbjct: 241 GGKKPQKAAAPGAKSHKKPRRQWQ 264
>gi|239758117 PREDICTED: hypothetical protein [Homo sapiens]
Length = 465
Score = 332 bits (851), Expect = 2e-91
Identities = 181/256 (70%), Positives = 198/256 (77%), Gaps = 17/256 (6%)
Query: 1 MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEP+PGPR YLHGPYLLLGEVLGHSALGAQ AQ ANGDADELLELPALLQ P G
Sbjct: 1 MSSPVLEPSPGPRSPYLHGPYLLLGEVLGHSALGAQHAQPANGDADELLELPALLQHPTG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDSRVTPATALL LSHRGRAQRRS+ AAAAQE+S GRGCLGKEPP++ESWTRS
Sbjct: 61 CDPCASLRDSRVTPATALLLLSHRGRAQRRSIQAAAAQEQSTGRGCLGKEPPSQESWTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGR--QKAA 178
DPR C+SQDA RSGSRVCRSRPQTRG GGK+ R++ A K+ G KKP R QKAA
Sbjct: 121 DPRRCLSQDAVRSGSRVCRSRPQTRGGGGKQPRRQKAAVAGAKSRGGEGKKPQRRGQKAA 180
Query: 179 VMGAKSRGG-----RGKKPQKA--AAAGAKSCNGGGKKLGRWGKKPGRRG-------QKA 224
GAKSRGG GKK ++ AAGAK C GGGK+ R G+K + G QKA
Sbjct: 181 TAGAKSRGGGVRSLGGKKMRRGQKGAAGAKRC-GGGKQPRRRGQKASKSGGVRCQTPQKA 239
Query: 225 AVTGAKSRKKPQRRGQ 240
A G KSRKK ++RGQ
Sbjct: 240 AAQGVKSRKKLRQRGQ 255
Score = 78.6 bits (192), Expect = 5e-15
Identities = 72/184 (39%), Positives = 87/184 (47%), Gaps = 43/184 (23%)
Query: 86 RAQRRSMHAAAAQERSLGRGC--LGKEPPNRESWTRSDPRHC--------ISQDASRSGS 135
+ QRR AA A +S G G LG + R + + C Q AS+SG
Sbjct: 171 KPQRRGQKAATAGAKSRGGGVRSLGGKKMRRGQKGAAGAKRCGGGKQPRRRGQKASKSGG 230
Query: 136 RVCRSRPQTRGSGG----KKLRQRGEKAAAV-------KTCSGRS--------KKPGRQK 176
C++ PQ + G KKLRQRG+KAAA KTC G KKP R+
Sbjct: 231 VRCQT-PQKAAAQGVKSRKKLRQRGQKAAAAGQEAAAGKTCGGGGEKHRGGGDKKPLRKN 289
Query: 177 AAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQ 236
+ G K+ GKKPQKAAAAG + KKL R QKAAV AKS KKP+
Sbjct: 290 SRWRGQKAAAAGGKKPQKAAAAGGER----RKKL---------RRQKAAVARAKSPKKPR 336
Query: 237 RRGQ 240
RGQ
Sbjct: 337 WRGQ 340
>gi|239758151 PREDICTED: hypothetical protein XP_002346314 [Homo
sapiens]
Length = 321
Score = 315 bits (807), Expect = 2e-86
Identities = 177/254 (69%), Positives = 191/254 (75%), Gaps = 17/254 (6%)
Query: 1 MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEP+PGP+ YLHG YLLLGEVLGHSALGAQ AQ ANGDADELLELPALLQ AG
Sbjct: 1 MSSPVLEPSPGPQSPYLHGLYLLLGEVLGHSALGAQHAQPANGDADELLELPALLQHLAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDS VTPATALL LSHRG+ QRRSM AAAAQE+SLGRGCLGKEPP ES TRS
Sbjct: 61 CDPCASLRDSCVTPATALLLLSHRGQVQRRSMQAAAAQEQSLGRGCLGKEPPKWESSTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAA---------AVKTCSGRSKK 171
PR C+SQDASRSGSRVCRSRPQTRG GGKK R RG+KAA V++ G+ +
Sbjct: 121 GPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPR-RGQKAATAGAKSRGGGVRSRGGKKIR 179
Query: 172 PGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPG-----RRGQKAAV 226
QKAA GAKS GG GKKPQKA A GA+ G KKL R GKK + G+K
Sbjct: 180 RRGQKAAAAGAKSCGGGGKKPQKARAVGAR--RRGWKKLRRRGKKAAAAGGEKAGKKLRQ 237
Query: 227 TGAKSRKKPQRRGQ 240
G K RKKP+RRGQ
Sbjct: 238 QGEKGRKKPRRRGQ 251
Score = 43.1 bits (100), Expect = 2e-04
Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 29/146 (19%)
Query: 86 RAQRRSMHAAAAQERSLGRGCLGKEPPN-------RESWT--RSDPRHCISQDASRSGSR 136
+ +RR AAAA +S G G GK+P R W R + + ++G +
Sbjct: 177 KIRRRGQKAAAAGAKSCGGG--GKKPQKARAVGARRRGWKKLRRRGKKAAAAGGEKAGKK 234
Query: 137 VC------RSRPQTRG-----SGGKKLRQ-RGEKAAAVKTCSGRSKKPGRQ--KAAVMGA 182
+ R +P+ RG +GG++ ++ R +KAAAV S KKP R+ +A +GA
Sbjct: 235 LRQQGEKGRKKPRRRGQKAAAAGGERCKKPRRQKAAAVSAKS--PKKPRRRVLNSARLGA 292
Query: 183 KSRGGRGKKPQKAAAAGAKSCNGGGK 208
+SR ++ QK+ A AKS G GK
Sbjct: 293 ESRKNPQRRGQKSMA--AKSRVGSGK 316
>gi|239752632 PREDICTED: hypothetical protein XP_002347697 [Homo
sapiens]
Length = 231
Score = 300 bits (767), Expect = 1e-81
Identities = 167/234 (71%), Positives = 179/234 (76%), Gaps = 12/234 (5%)
Query: 1 MSSPVLEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAG 60
MSSPVLEP+PGP+ YLHG YLLLGEVLGHSALGAQ AQ ANGDADELLELPALLQ AG
Sbjct: 1 MSSPVLEPSPGPQSPYLHGLYLLLGEVLGHSALGAQHAQPANGDADELLELPALLQHLAG 60
Query: 61 CDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRS 120
CDPCASLRDS VTPATALL LSHRG+ QRRSM AAAAQE+SLGRGCLGKEPP ES TRS
Sbjct: 61 CDPCASLRDSCVTPATALLLLSHRGQVQRRSMQAAAAQEQSLGRGCLGKEPPKWESSTRS 120
Query: 121 DPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAA---------AVKTCSGRSKK 171
PR C+SQDASRSGSRVCRSRPQTRG GGKK R RG+KAA V++ G+ +
Sbjct: 121 GPRRCLSQDASRSGSRVCRSRPQTRGGGGKKPR-RGQKAATAGAKSRGGGVRSRGGKKIR 179
Query: 172 PGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAA 225
QKAA GAKS GG GKKPQKA A GA+ G KKL R GKK G + A
Sbjct: 180 RRGQKAAAAGAKSCGGGGKKPQKARAVGAR--RRGWKKLRRRGKKAAAAGGEKA 231
>gi|239741651 PREDICTED: hypothetical protein XP_002342270 [Homo
sapiens]
Length = 337
Score = 268 bits (684), Expect = 4e-72
Identities = 164/271 (60%), Positives = 178/271 (65%), Gaps = 49/271 (18%)
Query: 19 GPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATAL 78
GPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQ PAG PCASLRDSRVTPATAL
Sbjct: 12 GPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQRPAGRGPCASLRDSRVTPATAL 71
Query: 79 LPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVC 138
L LSH RAQRRSM AAAAQERS GR LGKEP RESWTRS P C+SQDA R+GS+VC
Sbjct: 72 LLLSHCSRAQRRSMRAAAAQERSPGRRRLGKEPLIRESWTRSAPWRCLSQDAGRAGSQVC 131
Query: 139 RSRPQTRGSGGKKLRQR----------------GEKA--AAVKTCSGRSKKPGRQKAAVM 180
S PQTRG GGKKL+++ G+KA A K+ G KKPG++K A
Sbjct: 132 GSSPQTRGGGGKKLQRQKATVMGAKSRKKPQHWGQKAATAGAKSPGGGGKKPGQEKPAAT 191
Query: 181 G-----AKSRGGRGKKP--QKAAAAGA----KSCNGGGKKLGRWGKKPGRRGQKAAVTGA 229
G AKSRGG GKKP +K AAAGA K+ G K G+KP RGQKA GA
Sbjct: 192 GEKTRAAKSRGGGGKKPRREKPAAAGAKNPQKAAAAGAKFREAGGRKPRWRGQKATEAGA 251
Query: 230 KSR--------------------KKPQRRGQ 240
KSR KKP+RRGQ
Sbjct: 252 KSRGGGGIKPQKPAAAGAKIHGGKKPRRRGQ 282
>gi|239753329 PREDICTED: hypothetical protein XP_002345623 [Homo
sapiens]
Length = 351
Score = 245 bits (626), Expect = 2e-65
Identities = 155/253 (61%), Positives = 165/253 (65%), Gaps = 35/253 (13%)
Query: 19 GPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATAL 78
GPYLLLGE +GHSALGAQP QAA GDADELLELPALLQ PAG PCA+LR +TPA AL
Sbjct: 12 GPYLLLGEAVGHSALGAQPVQAAEGDADELLELPALLQRPAGRGPCATLRSHPITPAPAL 71
Query: 79 LPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVC 138
L LSH AQRRSM A A+ S GRG LGKEP RESWTRS PR C QDASR+GSRVC
Sbjct: 72 LLLSHSLPAQRRSMQATVAKAGSPGRGRLGKEPRRRESWTRSAPRRCPYQDASRAGSRVC 131
Query: 139 RSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKS------RGGR---- 188
RSRPQ RG G KK R+RG+KAA K+ G KKP QKAA GAK RG R
Sbjct: 132 RSRPQNRGGGDKKPRRRGQKAA--KSRGGGGKKPRGQKAAGAGAKKHRKPRRRGERAAAA 189
Query: 189 -GKKPQKAAAAGAKSCNGGGKK-LGRWGKKPGRR-----------------GQKAAVTGA 229
GKK QKAAA AKS GGGKK GKKP RR QKAA+TG
Sbjct: 190 GGKKLQKAAA--AKSRGGGGKKTAAAGGKKPRRRRGQKAAKSRGGGDKKLERQKAALTGV 247
Query: 230 KSR--KKPQRRGQ 240
KSR KKP R G+
Sbjct: 248 KSRGDKKPLRGGK 260
Score = 55.5 bits (132), Expect = 4e-08
Identities = 44/118 (37%), Positives = 58/118 (49%), Gaps = 16/118 (13%)
Query: 89 RRSMHAAAAQERSLG----RGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQT 144
++ AAAA+ R G GK+P R + R D + + ++
Sbjct: 192 KKLQKAAAAKSRGGGGKKTAAAGGKKPRRRRGQKAAKSRG--GGDKKLERQKAALTGVKS 249
Query: 145 RGS-----GGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAA 197
RG GGKK R+RG+ K+ G +KP QKAA GAKSRGGRG+KPQKA A
Sbjct: 250 RGDKKPLRGGKKQRERGQNT---KSRGGGGEKP--QKAAAAGAKSRGGRGEKPQKAEA 302
>gi|239756562 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 242 bits (618), Expect = 2e-64
Identities = 141/232 (60%), Positives = 161/232 (69%), Gaps = 25/232 (10%)
Query: 6 LEPNPGPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCA 65
L N GP YL GPYLLLGEV+GHSALGAQPAQAA DE+LELPALLQ PAG PCA
Sbjct: 3 LRQNRGPHTPYLQGPYLLLGEVVGHSALGAQPAQAA----DEVLELPALLQRPAGRRPCA 58
Query: 66 SLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHC 125
S R R+TPATALL LSHRGRA+RRSM AAAA+ S GR +GK PP+RESWTRS P+ C
Sbjct: 59 SHRGRRITPATALLLLSHRGRAERRSMQAAAAKAGSPGRRRVGKGPPSRESWTRSAPQRC 118
Query: 126 ISQDASRSGSRVCRSRPQTRGS-------------GGKKLRQRGEKAAAVKTCSGRS-KK 171
SQDA R+GSRVCRSRPQ+RG GGK+ R++ AA K+ G+S KK
Sbjct: 119 PSQDAGRAGSRVCRSRPQSRGGQKAAASGAKRRGVGGKEPRRQKPAAAGAKSRGGKSHKK 178
Query: 172 PGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQK 223
P R+ AK+ GG G KPQKAAAAGAK+ GGG GKKP RRG++
Sbjct: 179 PRRRGQKAAPAKNSGGGGNKPQKAAAAGAKNRGGGG------GKKP-RRGRR 223
>gi|239754599 PREDICTED: hypothetical protein [Homo sapiens]
Length = 294
Score = 229 bits (583), Expect = 2e-60
Identities = 135/227 (59%), Positives = 151/227 (66%), Gaps = 22/227 (9%)
Query: 19 GPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATAL 78
GPYLLLGEV+GHSALGAQPAQAANGDADELLEL ALLQ AG PCA+L +TPATAL
Sbjct: 12 GPYLLLGEVVGHSALGAQPAQAANGDADELLELSALLQPRAGRGPCATLSGRCITPATAL 71
Query: 79 LPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVC 138
L LSHR RAQ R M A AA+ S G G LGKEPP+RESWT S PR C QDASR+GS VC
Sbjct: 72 LLLSHRLRAQCRPMQATAAEAGSPGLGRLGKEPPSRESWTGSAPRRCPCQDASRAGSGVC 131
Query: 139 RSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAK-----SRGGRGKKPQ 193
RSRPQ+RG G +K R++ AA K+ G KKP RQK A G K SR G GKKP+
Sbjct: 132 RSRPQSRGGGSRKPRRQKAAAAQAKSLGGGGKKPRRQKCAAAGQKAAAEESRRGGGKKPR 191
Query: 194 KAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
+ GG K +G KKP QKAA G K+ P+RR Q
Sbjct: 192 R----------GGQKAVGAGAKKP----QKAAAAGTKT---PRRRRQ 221
>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
Length = 819
Score = 87.8 bits (216), Expect = 8e-18
Identities = 69/171 (40%), Positives = 85/171 (49%), Gaps = 19/171 (11%)
Query: 84 RGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQ 143
RG+ RR +AA + G G R R PR Q+ R + ++P
Sbjct: 364 RGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRW---QNPRRRAQKAPAAKP- 419
Query: 144 TRGSGGKKLRQRGEKAAAV---KTCSGRSKKP------GRQKAAVMGAKSRGGRGKKPQK 194
RG G KK R+RG KAA K+ SG KKP RQKAA GA+SRG + + QK
Sbjct: 420 -RGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESRGDKKQGRQK 478
Query: 195 AAAAGAKSCNGG-----GKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
A+AAG KS GG GK L R G+K G+KA GAKSR + Q R Q
Sbjct: 479 ASAAGTKSRGGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQ 529
Score = 83.6 bits (205), Expect = 1e-16
Identities = 64/163 (39%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 90 RSMHAAAAQERSLGRGCL-GKEPPNRESWTRSDPRHCISQDA-SRSGSRVCRSRPQTRGS 147
R+ +AAA ++ G G +S P+ + A SRSG + R ++RG
Sbjct: 141 RAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGD 200
Query: 148 GGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGG- 206
KK RQR K+ KT GR KK R K A GAKSR G GKKPQK G K+ GG
Sbjct: 201 EDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGK 260
Query: 207 ---GKKLGRWGKKPGRRGQKAAVTGAKSR------KKPQRRGQ 240
GK G KK R+GQ AA+ GAK R +KP +G+
Sbjct: 261 SRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAKGR 303
Score = 79.0 bits (193), Expect = 3e-15
Identities = 63/166 (37%), Positives = 79/166 (47%), Gaps = 19/166 (11%)
Query: 82 SHRGR-AQRRSMHAAAAQERSLGRGCL--GKEPPNRESWTRSDPRHCISQDASRSGSRVC 138
SH G+ RR A AA E++ G G++ P R+ + + + SR +
Sbjct: 493 SHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQRQKAV 552
Query: 139 RS---------RPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRG 189
+ Q+RG GG K RQ G+ AAA KT G K+PG QKAA KSR G G
Sbjct: 553 AAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDG 612
Query: 190 KKP---QKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSR 232
K QKAA GAKS KK R G+K +KA TGA SR
Sbjct: 613 GKKAWRQKAAGTGAKS----RKKPWRRGQKDAAAAEKAWATGATSR 654
Score = 78.6 bits (192), Expect = 5e-15
Identities = 76/228 (33%), Positives = 91/228 (39%), Gaps = 58/228 (25%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQ-- 128
R A A P + RR AA R GK+P R R ++
Sbjct: 410 RAQKAPAAKPRGGGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQKARQKAAEAGAESR 469
Query: 129 -DASRSGSRVCRSRPQTRGSG------------GKKLRQRGEKAAAVKTCSGRSKKPGRQ 175
D + + + ++RG G G+K GEKA A S K+P RQ
Sbjct: 470 GDKKQGRQKASAAGTKSRGGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQ 529
Query: 176 KAAVMGAKSR--GGRGKKPQKAAAAGAKSCNGGGKKLGR---------WG---------- 214
K AV GAKSR G + ++ QKA AAGA S GGG K R WG
Sbjct: 530 KPAVAGAKSRVGGSKSRQRQKAVAAGATSHGGGGNKQSRGGGGNKPRQWGQTAAAAKTRG 589
Query: 215 ---KKPG-----------RRG--------QKAAVTGAKSRKKPQRRGQ 240
K+PG R G QKAA TGAKSRKKP RRGQ
Sbjct: 590 GGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQ 637
Score = 78.2 bits (191), Expect = 6e-15
Identities = 72/214 (33%), Positives = 91/214 (42%), Gaps = 64/214 (29%)
Query: 86 RAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTR 145
+ +RR AA G+ +GK + R ++ A R G+ +P +
Sbjct: 247 KQRRRGQKAATG-----GKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPAAK 301
Query: 146 GSGG-----------------KKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSR--- 185
G GG KK R+RG+KA + G+QKAAV+G KSR
Sbjct: 302 GRGGRGPKSLGGQNPRWGRGGKKPRRRGQKATKAAAAGTKRGGGGQQKAAVVGVKSRKKQ 361
Query: 186 GGRGKKP--QKAAAAGAKSCNGG-------------GKKLGRW----------------- 213
RGKKP QKA+AAGAKS GG G+K RW
Sbjct: 362 RRRGKKPRRQKASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRG 421
Query: 214 --GKKPGRRGQKAAVT-GAKSR----KKPQRRGQ 240
KKP RRG KAA + G KSR KKP+RRGQ
Sbjct: 422 GGSKKPRRRGPKAAKSRGGKSRSGGGKKPRRRGQ 455
Score = 68.6 bits (166), Expect = 5e-12
Identities = 58/160 (36%), Positives = 74/160 (46%), Gaps = 17/160 (10%)
Query: 81 LSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRS 140
+ +RG Q A LG L + P + + + + GS +
Sbjct: 1 MDYRGHRQCNQAAGRAGPGAPLG-AALARTPVELAAESAAPALSAAAAGVKILGSGDKKL 59
Query: 141 RPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGA 200
R Q +GGKK R RG+K A +G+ + QKAA GA RG QKAAAAG
Sbjct: 60 RRQKAAAGGKKARLRGQKGAV----AGKEARQHWQKAA--GAGGAENRGGGEQKAAAAGT 113
Query: 201 KSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
KS LG G+KP RRGQKAA TG+ KKP+ R Q
Sbjct: 114 KS-------LGGRGRKPRRRGQKAAATGS---KKPRWRAQ 143
Score = 62.4 bits (150), Expect = 3e-10
Identities = 65/182 (35%), Positives = 92/182 (50%), Gaps = 43/182 (23%)
Query: 72 VTPATALLPLSHRGRAQRRSMHAAAAQERSLGRG----CLGKEPPNRESWTRS------D 121
++ A A + + G + R AAA +++ RG GKE R+ W ++ +
Sbjct: 42 LSAAAAGVKILGSGDKKLRRQKAAAGGKKARLRGQKGAVAGKEA--RQHWQKAAGAGGAE 99
Query: 122 PRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPG--RQKAAV 179
R Q A+ +G++ + G G+K R+RG+KAAA SKKP QK+A
Sbjct: 100 NRGGGEQKAAAAGTK-------SLGGRGRKPRRRGQKAAATG-----SKKPRWRAQKSAA 147
Query: 180 MGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSR--KKPQR 237
G+K+RG +K AAAAG KS + G+KP QKAA GAKSR KKP+R
Sbjct: 148 AGSKNRGAGAQKA--AAAAGVKS---------QGGEKP----QKAAAAGAKSRSGKKPRR 192
Query: 238 RG 239
RG
Sbjct: 193 RG 194
Score = 55.8 bits (133), Expect = 3e-08
Identities = 55/177 (31%), Positives = 75/177 (42%), Gaps = 30/177 (16%)
Query: 84 RGRAQRRSMHAAAAQERS-----LGRGCLGKEPPNRE---SWTRSDPRHCISQDASRSGS 135
R + RR AAA E++ RG GK+P ++ + + S + Q+A +
Sbjct: 629 RKKPWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAAGSESSAAAAVGQEAE-ARK 687
Query: 136 RVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKP---------GRQKAAVMGAKSRG 186
+ R R ++RG GG+ A + R KKP G + GAKSRG
Sbjct: 688 KPRRRRAKSRGDGGQNA------AVGINPWQRRGKKPRLGKSRGGGGAKSRGSGGAKSRG 741
Query: 187 GRGKKPQKA-AAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTG-----AKSRKKPQR 237
G K + AA +KS GGG K R G R G+KA G A KKP R
Sbjct: 742 SGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSRSGEKAVTAGGQKAAAAGGKKPPR 798
Score = 52.4 bits (124), Expect = 4e-07
Identities = 44/96 (45%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 143 QTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKS 202
++RGSGG K R G+KAAA K+ G K R GAKSR G + A G K+
Sbjct: 738 KSRGSGGAKSRS-GKKAAASKSHGGGGAKRRRGG----GAKSRSGE----KAVTAGGQKA 788
Query: 203 CNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRR 238
GGKK R K G RGQKAA G KKP RR
Sbjct: 789 AAAGGKKPPRV-KSRGGRGQKAAAGG----KKPLRR 819
>gi|4885379 histone cluster 1, H1e [Homo sapiens]
Length = 219
Score = 44.7 bits (104), Expect = 7e-05
Identities = 35/95 (36%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Query: 143 QTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKS 202
QT+G+G + +KAA SG +K P +KA AK G KKP+K A GA +
Sbjct: 95 QTKGTGASGSFKLNKKAA-----SGEAK-PKAKKAGAAKAKKPAGAAKKPKK--ATGAAT 146
Query: 203 CNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQR 237
KK + KKP AA GAK K P++
Sbjct: 147 PKKSAKKTPKKAKKP------AAAAGAKKAKSPKK 175
Score = 37.0 bits (84), Expect = 0.015
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 147 SGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQK-AAAAGAKSCNG 205
SG K + + AA K +G +KKP + A KS KK +K AAAAGAK
Sbjct: 113 SGEAKPKAKKAGAAKAKKPAGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKS 172
Query: 206 GGKKLGRWGKKPGRRGQKAAVTGAKSRK 233
K KK + KA K+ K
Sbjct: 173 PKKAKAAKPKKAPKSPAKAKAVKPKAAK 200
Score = 28.5 bits (62), Expect = 5.4
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 9/92 (9%)
Query: 147 SGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKS----RGGRGKKPQKAAAAGAKS 202
+G K ++ AA K + ++ K ++ AA GAK + + KP+KA + AK+
Sbjct: 132 AGAAKKPKKATGAATPKKSAKKTPKKAKKPAAAAGAKKAKSPKKAKAAKPKKAPKSPAKA 191
Query: 203 CNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKK 234
K + KP KAA + KK
Sbjct: 192 -----KAVKPKAAKPKTAKPKAAKPKKAAAKK 218
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 38.9 bits (89), Expect = 0.004
Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 20/173 (11%)
Query: 73 TPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASR 132
+PAT S + RS A+ RS R P R S +R+ R R
Sbjct: 566 SPATRGRSRSRTPARRGRSRSRTPARRRSRSR-----TPTRRRSRSRTPARR------GR 614
Query: 133 SGSRV-CRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKK 191
S SR R R +TR ++ R R + A ++ RS+ P R+ + +R GR +
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSR---SPARRSGRSRSRTPARRGRSRSRTPARRGRSRS 671
Query: 192 PQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVT----GAKSRKKPQRRGQ 240
A +G ++ GR + RRG+ + + G + PQRRG+
Sbjct: 672 RTPARRSGRSRSRTPARR-GRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGR 723
Score = 35.0 bits (79), Expect = 0.058
Identities = 35/174 (20%), Positives = 65/174 (37%), Gaps = 13/174 (7%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPP------NRESWTRSDPRH 124
R +P+ + + + R+ RR A++ + ++ R P +R R R
Sbjct: 1725 RRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRT 1784
Query: 125 CISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKS 184
+D S S R R ++R R+RG S+ P RQ+++ ++
Sbjct: 1785 TRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGY-------HSRSPARQESSRTSSRR 1837
Query: 185 RGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRR 238
R GR + P + + K R P + + T SR++ + R
Sbjct: 1838 RRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSR 1891
Score = 31.6 bits (70), Expect = 0.64
Identities = 40/172 (23%), Positives = 63/172 (36%), Gaps = 15/172 (8%)
Query: 73 TPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASR 132
+P A P SHR + + ++ RS GR K + S R + R
Sbjct: 440 SPKPAPAPGSHREISS-----SPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAKRGR 494
Query: 133 SGSRVCRSRPQTRGSGGKKLRQRGEKA---AAVKTCSGRSKKPGRQKAAVMGAKSRGGRG 189
S SR R +R + R R + + GRS+ P R + R GR
Sbjct: 495 SRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRS 554
Query: 190 KKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKK---PQRR 238
+ ++ + G + + P RRG+ + T A+ R + P RR
Sbjct: 555 RSARRGRSHSRSPATRGRSR----SRTPARRGRSRSRTPARRRSRSRTPTRR 602
Score = 29.3 bits (64), Expect = 3.2
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 24/150 (16%)
Query: 37 PAQAANGDADELLELP-ALLQLPAGCDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAA 95
P ++ +G + E+ + P A + +G D + PA LP RRS +
Sbjct: 1593 PRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPK----APAPRALP--------RRSRSGS 1640
Query: 96 AAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQR 155
+++ GRG P S T S P H SR+ R RS P+ + R+R
Sbjct: 1641 SSK----GRG----PSPEGSSSTESSPEH---PPKSRTARRGSRSSPEPKTKSRTPPRRR 1689
Query: 156 GEKAAAVKTCSGRSKKPGRQKAAVMGAKSR 185
+++ T R + R ++ +SR
Sbjct: 1690 SSRSSPELTRKARLSRRSRSASSSPETRSR 1719
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 38.5 bits (88), Expect = 0.005
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 139 RSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKA---AVMGAKSRGGRGKKPQKA 195
RSR ++RG G +K +++ K + + S++ +QKA + S +
Sbjct: 134 RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
Query: 196 AAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
+++ + S + G KK G++ K RR +K K RKK +++G+
Sbjct: 194 SSSSSSSSSDGRKKRGKY--KDKRRKKK------KKRKKLKKKGK 230
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 146 GSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNG 205
G+ +L R A ++ C+ R+ +A G + G RG P A+A G ++ +G
Sbjct: 12 GAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDG 71
Query: 206 --GGKKLGRWGKKPGRRGQKAA 225
G + G P R +AA
Sbjct: 72 TWGVRTKGSGAALPSRPASRAA 93
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 38.5 bits (88), Expect = 0.005
Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 11/105 (10%)
Query: 139 RSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKA---AVMGAKSRGGRGKKPQKA 195
RSR ++RG G +K +++ K + + S++ +QKA + S +
Sbjct: 134 RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
Query: 196 AAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
+++ + S + G KK G++ K RR +K K RKK +++G+
Sbjct: 194 SSSSSSSSSDGRKKRGKY--KDKRRKKK------KKRKKLKKKGK 230
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 146 GSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNG 205
G+ +L R A ++ C+ R+ +A G + G RG P A+A G ++ +G
Sbjct: 12 GAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDG 71
Query: 206 --GGKKLGRWGKKPGRRGQKAA 225
G + G P R +AA
Sbjct: 72 TWGVRTKGSGAALPSRPASRAA 93
>gi|148746220 spermatogenesis associated, serine-rich 2 [Homo
sapiens]
Length = 545
Score = 38.1 bits (87), Expect = 0.007
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 129 DASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGR 188
DAS + S C S P S KK GE AA+ SG+ +P R+ V+ RGG+
Sbjct: 397 DASAASSSTCASPPSLT-SANKKNFAPGETPAAIANSSGQPYQPLRE---VLPGNRRGGQ 452
Query: 189 GKKPQ 193
G +PQ
Sbjct: 453 GYRPQ 457
>gi|169207782 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 37.7 bits (86), Expect = 0.009
Identities = 57/210 (27%), Positives = 74/210 (35%), Gaps = 20/210 (9%)
Query: 11 GPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDS 70
GPRP L G A G+ A +D PA +L P +L
Sbjct: 52 GPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSD-----PATSRLGGSRGPHPTLPPG 106
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDA 130
PA +L+ RG Q R A+ RG ++ S RS R C A
Sbjct: 107 ---PAGSLVFPERRGSLQDRLGRASRPGCPPSPRG--SRQERGANSPGRSGARGCGGAAA 161
Query: 131 SRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGK 190
+ R RP+ G+ G R A + S +PGR+ A G RG
Sbjct: 162 LQQEPTNFRGRPRP-GARGTDPPGRTLPAPLARP----STQPGRRPGLGRAASPLGPRG- 215
Query: 191 KPQKAAAAGAKSCNGGGKKLGRWGKKPGRR 220
A GA GG+ GRWG+ RR
Sbjct: 216 ----AGVTGAGPATQGGRDRGRWGRWVRRR 241
>gi|169207076 PREDICTED: hypothetical protein [Homo sapiens]
Length = 330
Score = 37.7 bits (86), Expect = 0.009
Identities = 57/210 (27%), Positives = 74/210 (35%), Gaps = 20/210 (9%)
Query: 11 GPRPRYLHGPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDS 70
GPRP L G A G+ A +D PA +L P +L
Sbjct: 52 GPRPPQTIPTLFLAGVFSETEAPGSSTHVGAGNSSD-----PATSRLGGSRGPHPTLPPG 106
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDA 130
PA +L+ RG Q R A+ RG ++ S RS R C A
Sbjct: 107 ---PAGSLVFPERRGSLQDRLGRASRPGCPPSPRG--SRQERGANSPGRSGARGCGGAAA 161
Query: 131 SRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGK 190
+ R RP+ G+ G R A + S +PGR+ A G RG
Sbjct: 162 LQQEPTNFRGRPRP-GARGTDPPGRTLPAPLARP----STQPGRRPGLGRAASPLGPRG- 215
Query: 191 KPQKAAAAGAKSCNGGGKKLGRWGKKPGRR 220
A GA GG+ GRWG+ RR
Sbjct: 216 ----AGVTGAGPATQGGRDRGRWGRWVRRR 241
>gi|39653317 jumonji domain containing 2D [Homo sapiens]
Length = 523
Score = 37.7 bits (86), Expect = 0.009
Identities = 27/85 (31%), Positives = 36/85 (42%), Gaps = 7/85 (8%)
Query: 117 WTRSDPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAV----KTCSGRSKKP 172
W R P ++ +R + VC S P+ G + R AAAV K S S P
Sbjct: 381 WARHSPWPMAARSGTRCHTLVCSSLPRRSAVSGTATQPR---AAAVHSSKKPSSTPSSTP 437
Query: 173 GRQKAAVMGAKSRGGRGKKPQKAAA 197
G + + R GRG+ PQK A
Sbjct: 438 GPSAQIIHPSNGRRGRGRPPQKLRA 462
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 37.4 bits (85), Expect = 0.012
Identities = 47/183 (25%), Positives = 72/183 (39%), Gaps = 30/183 (16%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDA 130
R + A LP RA R ++ RG L R R H S+
Sbjct: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGR---ARGAMAHVGSRKR 132
Query: 131 SRSGSRVCRSRPQTRGSGGKKLRQR-------------GEKAAAVKTCSGRSKKPGRQKA 177
SRS RSR + RGS +K + R G KA+ RSK+ R++
Sbjct: 133 SRS-----RSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSKQKARRRT 187
Query: 178 AVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQR 237
+ S ++++ + S + G KK G++ K RR +K K RKK ++
Sbjct: 188 R-SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKY--KDKRRKKK------KKRKKLKK 238
Query: 238 RGQ 240
+G+
Sbjct: 239 KGK 241
Score = 35.8 bits (81), Expect = 0.034
Identities = 52/215 (24%), Positives = 75/215 (34%), Gaps = 20/215 (9%)
Query: 19 GPYLLLGEVLGHSALGAQPAQAANGDADELLELPALLQLPAGCDPCASLRDSRVTPATAL 78
GP LL G A G L PA P P AS + A
Sbjct: 55 GPAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPR---PEASSPPLPLEKARGG 111
Query: 79 LPLSHRGRAQRRSMHAAA-----AQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRS 133
L GRA+ H + ++ RS GRG ++ +R + R+C AS S
Sbjct: 112 LSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSR----KDTSRNC---SASTS 164
Query: 134 GSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQ 193
R + P +K R+R +++ + S S ++ + R RGK
Sbjct: 165 QGRKASTAPGAEERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD 224
Query: 194 KAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTG 228
K K KKL + GK+ Q A+ G
Sbjct: 225 KRRKKKKKR-----KKLKKKGKEKAEAQQVEALPG 254
Score = 30.8 bits (68), Expect = 1.1
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 146 GSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNG 205
G+ +L R A ++ C+ R+ +A G + G RG P A+A G ++ +G
Sbjct: 12 GAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLLASAGGGRARDG 71
Query: 206 --GGKKLGRWGKKPGRRGQKAA 225
G + G P R +AA
Sbjct: 72 TWGVRTKGSGAALPSRPASRAA 93
>gi|239755624 PREDICTED: hypothetical protein XP_002344645 [Homo
sapiens]
Length = 427
Score = 37.0 bits (84), Expect = 0.015
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 13/153 (8%)
Query: 70 SRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGR-GCL---------GKEPPNRESWTR 119
+ V P A LS A +H A R R CL G +PPN TR
Sbjct: 63 TEVPPPPASFNLSELPCAAGVQVHRAGQDVRYPERESCLLSMDMVGGPGLKPPNWPQETR 122
Query: 120 SDPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAV 179
PR +S A + S Q G L G +A A++T + G ++
Sbjct: 123 C-PRSQLS--AGLCSAFHMSSISQLHAEGSDALVAAGRQAGALQTHAHVGVVDGEERGVA 179
Query: 180 MGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGR 212
G GRG ++AAAA +G G++L R
Sbjct: 180 GGRAQGPGRGAGQEEAAAAAVHRVSGPGEELRR 212
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 36.6 bits (83), Expect = 0.020
Identities = 37/164 (22%), Positives = 62/164 (37%), Gaps = 14/164 (8%)
Query: 84 RGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQ 143
RGR+Q +S+ + ++ RS G ++ R + + SRS SR R +
Sbjct: 319 RGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSR 378
Query: 144 TRGSGGKKLRQRGEKAAAVKTCSGRSKKPGR-----QKAAVMGAKSRGGRGKKPQKAAAA 198
RGS +K T +S+ P R ++ A + R GRG+
Sbjct: 379 KRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQ 438
Query: 199 GAKSCNGGGKKLGRWGKKPG----RRGQKAAVTGAKSRKKPQRR 238
+S + K KP R + + + +SR K + R
Sbjct: 439 ETRSRSRSNSK-----SKPNLPSESRSRSKSASKTRSRSKSRSR 477
Score = 27.7 bits (60), Expect = 9.2
Identities = 30/120 (25%), Positives = 48/120 (40%), Gaps = 8/120 (6%)
Query: 127 SQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRG 186
S+ SRS SR SR SG K ++ + RSK R ++ K +
Sbjct: 188 SRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKS 247
Query: 187 ---GRGKKPQKAAAAG---AKSCNGGGKKLGRWGK--KPGRRGQKAAVTGAKSRKKPQRR 238
+ K ++ +AG +KS + +K+ KP R + +KSR + Q R
Sbjct: 248 RSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQER 307
>gi|239757126 PREDICTED: hypothetical protein [Homo sapiens]
Length = 181
Score = 36.2 bits (82), Expect = 0.026
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 33 LGAQPAQAANGDADELLELPAL-LQLPAGCDPCASLRDSRVTPATALL--PLSHRGRAQR 89
+G +P +L PAL L G +P L + LL PL +
Sbjct: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
Query: 90 RSMHAAAAQERSLGRGCLGKE-PPNRESWT--RSDPRHCISQDASRSGSRVCRS-----R 141
A + E LGRGC G + PP + T R PR + +RSG+ RS
Sbjct: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
Query: 142 PQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGR 188
P+ R + G +AA V+ G S +P Q AA A+ R R
Sbjct: 121 PRVRAAPG--------RAAGVR-APGHSSRPRTQSAATWTARVRPER 158
>gi|169206171 PREDICTED: hypothetical protein [Homo sapiens]
Length = 466
Score = 36.2 bits (82), Expect = 0.026
Identities = 47/196 (23%), Positives = 67/196 (34%), Gaps = 34/196 (17%)
Query: 58 PAGCD-----PCASLRDSRVTPATALL---PLSHRGRAQRRSMHAAAAQERSLGRG--CL 107
PAG D P SL R A P R ++ R+ R+ G G C
Sbjct: 62 PAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCA 121
Query: 108 GKEPPNRESWTRSDP-------RHCISQDASRSGSRVCRSRPQT-RGSGGKKLRQRGEKA 159
G P + + P R DAS G R S P+ GG+ R +
Sbjct: 122 GSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRASHSGPRAGTPGGGRSSRAGARRK 181
Query: 160 AAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGR 219
+ C + +K ++ +G+ S GG G P A W + G
Sbjct: 182 TPLSLCPLKLRKGSSRRCQGLGS-SWGGSGTPPPPRAL---------------WNRHGGA 225
Query: 220 RGQKAAVTGAKSRKKP 235
G +A V G++ R P
Sbjct: 226 AGARAQVRGSEKRACP 241
Score = 30.4 bits (67), Expect = 1.4
Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 37/163 (22%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDA 130
R TP + L PL R + RR ++ G G PP R W R
Sbjct: 180 RKTPLS-LCPLKLRKGSSRRCQGLGSSW------GGSGTPPPPRALWNRHG--------- 223
Query: 131 SRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGK 190
G+ G + + RG + A C G + P A +G ++RG G
Sbjct: 224 ---------------GAAGARAQVRGSEKRA---CPGSTLPPSSVLAGCVGTRARGHGGV 265
Query: 191 KPQKAAAAGAKSCNGGGKKLGRWGK-KPGRRGQKAAVTGAKSR 232
+ Q+ +A + S G + L + +PG+ + + A+ R
Sbjct: 266 QRQRFSAPSSHST--GARTLPTPSRARPGKPAPRGSAPPARLR 306
>gi|239751639 PREDICTED: hypothetical protein XP_002347942 [Homo
sapiens]
Length = 181
Score = 36.2 bits (82), Expect = 0.026
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 33 LGAQPAQAANGDADELLELPAL-LQLPAGCDPCASLRDSRVTPATALL--PLSHRGRAQR 89
+G +P +L PAL L G +P L + LL PL +
Sbjct: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
Query: 90 RSMHAAAAQERSLGRGCLGKE-PPNRESWT--RSDPRHCISQDASRSGSRVCRS-----R 141
A + E LGRGC G + PP + T R PR + +RSG+ RS
Sbjct: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
Query: 142 PQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGR 188
P+ R + G +AA V+ G S +P Q AA A+ R R
Sbjct: 121 PRVRAAPG--------RAAGVR-APGHSSRPRTQSAATWTARVRPER 158
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.026
Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 34/159 (21%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDA 130
R TP + L PL R + RR ++ G G PP R W R
Sbjct: 180 RKTPLS-LCPLKLRKGSSRRCQGLGSSW------GGSGTPPPPRALWNRHG--------- 223
Query: 131 SRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGK 190
G+ G + + RG + A C G + P A +G ++RG G
Sbjct: 224 ---------------GAAGARAQVRGSEKRA---CPGSTLPPSSVLAGCVGTRARGHGGV 265
Query: 191 KPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGA 229
+ Q+ +A + S +GG R ++P KAA A
Sbjct: 266 QRQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASA 304
Score = 29.6 bits (65), Expect = 2.4
Identities = 46/198 (23%), Positives = 67/198 (33%), Gaps = 38/198 (19%)
Query: 58 PAGCD-----PCASLRDSRVTPATALL---PLSHRGRAQRRSMHAAAAQERSLGRG--CL 107
PAG D P SL R A P R ++ R+ R+ G G C
Sbjct: 62 PAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCA 121
Query: 108 GKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSG 167
G P + + P A S R ++ G GG RG +
Sbjct: 122 GSAPAPSGAQSCGGP-------APASALRRPLTQWDASGGGG-----RGSHSGP------ 163
Query: 168 RSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLG----------RWGKKP 217
R+ PG +++ GA+ + P K ++ C G G G W +
Sbjct: 164 RAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHG 223
Query: 218 GRRGQKAAVTGAKSRKKP 235
G G +A V G++ R P
Sbjct: 224 GAAGARAQVRGSEKRACP 241
>gi|239750127 PREDICTED: hypothetical protein XP_002347282 [Homo
sapiens]
Length = 457
Score = 36.2 bits (82), Expect = 0.026
Identities = 43/153 (28%), Positives = 59/153 (38%), Gaps = 13/153 (8%)
Query: 70 SRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGR-GCL---------GKEPPNRESWTR 119
+ V P A LS A +H A R R CL G +PPN TR
Sbjct: 93 TEVPPPPASFNLSELPCAAGVQVHRAGQDVRYPERESCLLSMDMVGGPGLKPPNWPQETR 152
Query: 120 SDPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAV 179
PR +S A + S Q G L G +A A++T + G ++
Sbjct: 153 C-PRSQLS--AGLCSAFHMSSISQLHAEGPDALVAAGRQAGALQTHAHVGVVDGEERGVA 209
Query: 180 MGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGR 212
G GRG ++AAAA +G G++L R
Sbjct: 210 GGRAQGPGRGAGQEEAAAAAVHRVSGPGEELRR 242
>gi|239746151 PREDICTED: hypothetical protein XP_002344288 [Homo
sapiens]
Length = 181
Score = 36.2 bits (82), Expect = 0.026
Identities = 48/167 (28%), Positives = 66/167 (39%), Gaps = 20/167 (11%)
Query: 33 LGAQPAQAANGDADELLELPAL-LQLPAGCDPCASLRDSRVTPATALL--PLSHRGRAQR 89
+G +P +L PAL L G +P L + LL PL +
Sbjct: 1 MGTRPNHQCGFHECQLFAFPALNFLLLGGPEPRGYLALQMLNSQVLLLQVPLLLGHLVEE 60
Query: 90 RSMHAAAAQERSLGRGCLGKE-PPNRESWT--RSDPRHCISQDASRSGSRVCRS-----R 141
A + E LGRGC G + PP + T R PR + +RSG+ RS
Sbjct: 61 LLDPAVLSLELCLGRGCEGPQGPPGSQGLTGGRWTPRFPDRRTRTRSGAAPARSADCGCA 120
Query: 142 PQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGR 188
P+ R + G +AA V+ G S +P Q AA A+ R R
Sbjct: 121 PRVRAAPG--------RAAGVR-APGHSSRPRTQSAATWTARVRPER 158
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 36.2 bits (82), Expect = 0.026
Identities = 40/159 (25%), Positives = 59/159 (37%), Gaps = 34/159 (21%)
Query: 71 RVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCISQDA 130
R TP + L PL R + RR ++ G G PP R W R
Sbjct: 180 RKTPLS-LCPLKLRKGSSRRCQGLGSSW------GGSGTPPPPRALWNRHG--------- 223
Query: 131 SRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRGGRGK 190
G+ G + + RG + A C G + P A +G ++RG G
Sbjct: 224 ---------------GAAGARAQVRGSEKRA---CPGSTLPPSSVLAGCVGTRARGHGGV 265
Query: 191 KPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGA 229
+ Q+ +A + S +GG R ++P KAA A
Sbjct: 266 QRQRFSAPSSHSTSGGRPTGERSSREPLLDPSKAARASA 304
Score = 29.6 bits (65), Expect = 2.4
Identities = 46/198 (23%), Positives = 67/198 (33%), Gaps = 38/198 (19%)
Query: 58 PAGCD-----PCASLRDSRVTPATALL---PLSHRGRAQRRSMHAAAAQERSLGRG--CL 107
PAG D P SL R A P R ++ R+ R+ G G C
Sbjct: 62 PAGLDCGPTRPSGSLTTRRPRDAGEAAVSGPSRQRRTSRARTALWGRRSRRAAGPGLDCA 121
Query: 108 GKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSG 167
G P + + P A S R ++ G GG RG +
Sbjct: 122 GSAPAPSGAQSCGGP-------APASALRRPLTQWDASGGGG-----RGSHSGP------ 163
Query: 168 RSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLG----------RWGKKP 217
R+ PG +++ GA+ + P K ++ C G G G W +
Sbjct: 164 RAGTPGGGRSSRAGARRKTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPRALWNRHG 223
Query: 218 GRRGQKAAVTGAKSRKKP 235
G G +A V G++ R P
Sbjct: 224 GAAGARAQVRGSEKRACP 241
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 35.8 bits (81), Expect = 0.034
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 17/174 (9%)
Query: 68 RDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPPNRESWTRSDPRHCIS 127
R +PA A P + G R+ R R KE + S T+ P
Sbjct: 495 RQRSPSPAPAPAPAAAAGPPTRKK------SRRERKRSGEAKEAASSSSGTQPAP----P 544
Query: 128 QDASRSGSRVCRSRPQTRGS-GGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMGAKSRG 186
AS S+ RSR + GS R+R + ++ RS+ R++ ++SR
Sbjct: 545 APASPWDSKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSRE 604
Query: 187 GRGKKPQKAAAAGAKSCNGGGKKLGRWGKKPGRRGQKAAVTGAKSRKKPQRRGQ 240
R ++ + A+ A S + ++ GK G K K +K+ + RG+
Sbjct: 605 KRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSK------KKKKRSRSRGE 652
Score = 27.7 bits (60), Expect = 9.2
Identities = 49/196 (25%), Positives = 73/196 (37%), Gaps = 24/196 (12%)
Query: 42 NGDADELLELPALLQLPAGCDPCASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERS 101
+GD E + PA P+G C RDSR A +P S Q + H A +R+
Sbjct: 655 SGDGSE--KAPAPAPPPSGSTSCGD-RDSRRRGA---VPPS----IQDLTDHDLFAIKRT 704
Query: 102 LGRGCLGKEPPNRESWTRSDPRHCISQDASRSGSRVCRSRPQTRGS--GGKKLRQRGEKA 159
+ G L K SDPR AS V G GGK ++ ++
Sbjct: 705 ITVGRLDK----------SDPRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRS 754
Query: 160 AAVKTCSGRSKKPGRQKAAVMGAKSRGGRGKKPQKAAAAGAKSCNGGGKKLGRWGKKP-- 217
A + S +K R+KA G + R + + ++ A+ G K P
Sbjct: 755 GAASSSSSSREKGSRRKALDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVS 814
Query: 218 GRRGQKAAVTGAKSRK 233
G ++ + SRK
Sbjct: 815 SGSGSSSSSSSCSSRK 830
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 35.4 bits (80), Expect = 0.044
Identities = 33/151 (21%), Positives = 53/151 (35%), Gaps = 13/151 (8%)
Query: 64 CASLRDSRVTPATALLPLSHRGRAQRRSMHAAAAQERSLGRGCLGKEPP--NRESWTRSD 121
C S+ S TPA+ + G +R + SL P R+D
Sbjct: 5795 CTSMPSSPATPASGTKVIPSSGSKLKRPTPTFHSSRTSLAGDTSNSSSPASTGAKTNRAD 5854
Query: 122 PRHCISQDASRSGSRVCRSRPQTRGSGGKKLRQRGEKAAAVKTCSGRSKKPGRQKAAVMG 181
P+ S+ SR+GSR +G + +RG A+ +S +++ G
Sbjct: 5855 PKKSASRPGSRAGSR----------AGSRASSRRGSDASDFDLLETQSACSDTSESSAAG 5904
Query: 182 AKSRGGRG-KKPQKAAAAGAKSCNGGGKKLG 211
+ RG KP K K+ + G
Sbjct: 5905 GQGNSRRGLNKPSKIPTMSKKTTTASPRTPG 5935
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.313 0.130 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,457,553
Number of Sequences: 37866
Number of extensions: 593996
Number of successful extensions: 2844
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 241
Number of HSP's that attempted gapping in prelim test: 2279
Number of HSP's gapped (non-prelim): 469
length of query: 240
length of database: 18,247,518
effective HSP length: 99
effective length of query: 141
effective length of database: 14,498,784
effective search space: 2044328544
effective search space used: 2044328544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.