Guide to the Human Genome
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Name: LOC100290729 Sequence: fasta or formatted (285aa) NCBI GI: 239752383
Description:

PREDICTED: hypothetical protein XP_002348219

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         19           1
 C cysteine            3.2          9           1
 D aspartate           3.2          9           1
 E glutamate           6.0         17           2
 F phenylalanine       4.2         12           1
 G glycine            12.3         35           2
 H histidine           0.4          1           1
 I isoleucine          1.1          3           1
 K lysine              4.2         12           1
 L leucine            13.3         38           2
 M methionine          2.1          6           1
 N asparagine          2.8          8           1
 P proline             8.1         23           4
 Q glutamine           4.2         12           1
 R arginine            7.0         20           2
 S serine             11.2         32           2
 T threonine           4.9         14           1
 V valine              1.8          5           2
 W tryptophan          2.5          7           1
 Y tyrosine            1.1          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002348219 
LOC100292203          1.000   PREDICTED: hypothetical protein 
LOC100287881          0.995   PREDICTED: hypothetical protein XP_002343876 
PSORS1C2              0.011   SPR1 protein 
TANC1                 0.009   tetratricopeptide repeat, ankyrin repeat and coiled...
TANC1                 0.009   tetratricopeptide repeat, ankyrin repeat and coiled...
TBC1D5                0.009   TBC1 domain family, member 5 isoform a 
TBC1D5                0.009   TBC1 domain family, member 5 isoform b 
TBC1D5                0.009   TBC1 domain family, member 5 isoform b 
GIGYF1                0.009   PERQ amino acid rich, with GYF domain 1 
APLP1                 0.009   amyloid precursor-like protein 1 isoform 2 precursor ...
APLP1                 0.009   amyloid precursor-like protein 1 isoform 1 precursor...
ADAMTS7               0.009   ADAM metallopeptidase with thrombospondin type 1 mot...
TGM5                  0.009   transglutaminase 5 isoform 1 
BCL2L14               0.007   BCL2-like 14 isoform 1 
BCL2L14               0.007   BCL2-like 14 isoform 1 
BCL2L14               0.007   BCL2-like 14 isoform 2 
LOC100293267          0.007   PREDICTED: hypothetical protein 
OBSCN                 0.005   obscurin, cytoskeletal calmodulin and titin-interac...
SENP7                 0.005   sentrin/SUMO-specific protease 7 isoform 2 
SENP7                 0.005   sentrin/SUMO-specific protease 7 isoform 1 
LOC100290783          0.005   PREDICTED: hypothetical protein XP_002347614 
LOC100288864          0.005   PREDICTED: hypothetical protein XP_002343435 
ODZ3                  0.005   odz, odd Oz/ten-m homolog 3 
SP7                   0.005   osterix 
MIXL1                 0.005   Mix-like homeobox protein 1 
UBE4B                 0.005   ubiquitination factor E4B isoform 1 
PLEKHG5               0.005   pleckstrin homology domain containing family G membe...
PLEKHG5               0.005   pleckstrin homology domain containing family G memb...
PLEKHG5               0.005   pleckstrin homology domain containing family G memb...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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