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Search of human proteins with 239752220
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo ... 647 0.0
gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo ... 608 e-174
gi|57864582 hornerin [Homo sapiens] 36 0.048
gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo sap... 35 0.063
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens] 35 0.083
gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Hom... 35 0.083
gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo ... 35 0.11
gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo ... 33 0.31
gi|239508997 PREDICTED: hypothetical protein [Homo sapiens] 33 0.31
gi|153070260 myristoylated alanine-rich protein kinase C substra... 33 0.41
gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo sapi... 33 0.41
gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo sapi... 33 0.41
gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [H... 32 0.54
gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [H... 32 0.54
gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [H... 32 0.54
gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Ho... 32 0.54
gi|148727255 microtubule associated serine/threonine kinase fami... 32 0.54
gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo ... 32 0.70
gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo ... 32 0.70
gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo ... 31 1.2
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 31 1.2
gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo ... 31 1.6
gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo ... 31 1.6
gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo ... 31 1.6
gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens] 31 1.6
gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens] 31 1.6
gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo sap... 30 2.0
gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo sapi... 30 2.0
gi|239752740 PREDICTED: hypothetical protein [Homo sapiens] 30 2.0
gi|239747278 PREDICTED: hypothetical protein XP_002346415 [Homo ... 30 2.0
>gi|239752220 PREDICTED: hypothetical protein XP_002348149 [Homo
sapiens]
Length = 305
Score = 647 bits (1669), Expect = 0.0
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG
Sbjct: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
Query: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS
Sbjct: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
Query: 121 RKCSGWKRKGFSQTASSFSTDDRLVMSVAYLRDAEALYFDVTGCHMGHTQGDDVPKALHL 180
RKCSGWKRKGFSQTASSFSTDDRLVMSVAYLRDAEALYFDVTGCHMGHTQGDDVPKALHL
Sbjct: 121 RKCSGWKRKGFSQTASSFSTDDRLVMSVAYLRDAEALYFDVTGCHMGHTQGDDVPKALHL 180
Query: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVGGKEKP 240
VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVGGKEKP
Sbjct: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVGGKEKP 240
Query: 241 KIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLCS 300
KIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLCS
Sbjct: 241 KIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLCS 300
Query: 301 RHAGP 305
RHAGP
Sbjct: 301 RHAGP 305
>gi|239746741 PREDICTED: hypothetical protein XP_002343822 [Homo
sapiens]
Length = 306
Score = 608 bits (1567), Expect = e-174
Identities = 288/306 (94%), Positives = 293/306 (95%), Gaps = 1/306 (0%)
Query: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG
Sbjct: 1 MVLAGLLSLMWAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAG 60
Query: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS
Sbjct: 61 QGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWAS 120
Query: 121 RKCSGWKRKGFSQTASSFSTDDRLVMSVAYLRDAEALYFDVTGCHMGHTQGDDVPKALHL 180
RKCSGWKRKGF QTASSFSTDDRLVMSVAYLRDAEALYFDV GCHMGHTQGDDVPKALHL
Sbjct: 121 RKCSGWKRKGFFQTASSFSTDDRLVMSVAYLRDAEALYFDVMGCHMGHTQGDDVPKALHL 180
Query: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVGGKEKP 240
VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCV E+
Sbjct: 181 VNHGSGVGHVSLVTHLWSPHLPYHVVDLLLDTDWTDMRPHNGSAPRGHSPSSCVQQPEEA 240
Query: 241 KIEI-SNVDGVPALCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC 299
++ + VPA+CPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC
Sbjct: 241 RVVVLEAAPAVPAVCPSAHHPPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKVDTEKRLC 300
Query: 300 SRHAGP 305
SRHAGP
Sbjct: 301 SRHAGP 306
>gi|57864582 hornerin [Homo sapiens]
Length = 2850
Score = 35.8 bits (81), Expect = 0.048
Identities = 42/183 (22%), Positives = 65/183 (35%), Gaps = 12/183 (6%)
Query: 13 GHSTKLVGGWGHQKADDTRVAGPGLSG---GHGEAEVLQQGGEEEEELHAGQGLPEACTA 69
G S+ L +G + + +G G G GH + V H G +C++
Sbjct: 743 GSSSGLSSSYGQHGSGSHQSSGHGRQGSGSGHSPSRVRHGSSSGHSSSHGQHGSGTSCSS 802
Query: 70 ACGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRK 129
+CG E GS Q S G E GS Q ++ G + F+
Sbjct: 803 SCGH----YESGSG----QASGFGQHESGSGQGYSQHGSASGHFSSQGRHGSTSGQSSSS 854
Query: 130 GFSQTASSFSTDDRLVMSVAYLRDAEALYFDVTGCHMGHTQ-GDDVPKALHLVNHGSGVG 188
G ++S S+ S ++ + +G GH Q G ++ HGSG G
Sbjct: 855 GQHDSSSGQSSSYGQHESASHHASGRGRHGSGSGQSPGHGQRGSGSGQSPSYGRHGSGSG 914
Query: 189 HVS 191
S
Sbjct: 915 RSS 917
>gi|154759257 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 [Homo
sapiens]
Length = 666
Score = 35.4 bits (80), Expect = 0.063
Identities = 33/112 (29%), Positives = 44/112 (39%), Gaps = 9/112 (8%)
Query: 28 DDTRVAGP--GLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVI 85
D AGP +G HG A L + + Q P AA +EP +
Sbjct: 13 DAAAAAGPEGAEAGAHGRARALLERLQSRARERQQQREPAQTEAAAS-----TEPATRRR 67
Query: 86 --PLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKGFSQTA 135
P + D EPGSP+AP K RKA G ++ + G G S+ A
Sbjct: 68 RRPRRRRRVNDAEPGSPEAPQGKRRKADGEDAGAESNEEAPGEPSAGSSEEA 119
>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
Length = 1263
Score = 35.0 bits (79), Expect = 0.083
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 5/70 (7%)
Query: 213 DWTDMRPH-----NGSAPRGHSPSSCVGGKEKPKIEISNVDGVPALCPSAHHPPAWSAKA 267
D + PH + +P +SPS+ VG +++ +D P PSAH P +
Sbjct: 828 DQAHLHPHLFSDQSRGSPSSYSPSTGVGFSPTQALKVPPLDQFPTFPPSAHQQPPHYTTS 887
Query: 268 AQRQAASSVT 277
A +QA S T
Sbjct: 888 ALQQALLSPT 897
>gi|78190492 retinitis pigmentosa GTPase regulator isoform C [Homo
sapiens]
Length = 1152
Score = 35.0 bits (79), Expect = 0.083
Identities = 26/87 (29%), Positives = 34/87 (39%), Gaps = 12/87 (13%)
Query: 23 GHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEA----CTAACGEGRGVS 78
G + ++ G G G GE E + G+ EEE G+G E GEG G
Sbjct: 891 GEGEGEEEEGEGEGEEEGEGEGEEEEGEGKGEEEGEEGEGEGEEEEGEGEGEDGEGEGEE 950
Query: 79 EPGSWVIPLQDSTEGDREPGSPQAPAE 105
E G W EG+ E G + E
Sbjct: 951 EEGEW--------EGEEEEGEGEGEEE 969
Score = 33.1 bits (74), Expect = 0.31
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 1/92 (1%)
Query: 21 GWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEP 80
G G +K + V G + G GE E ++ GE EEE G+ GEG+G E
Sbjct: 803 GRGEEKEEGGEVEGGEVEEGKGEREEEEEEGEGEEEEGEGEEEEGEGEEEEGEGKG-EEE 861
Query: 81 GSWVIPLQDSTEGDREPGSPQAPAEKGRKASG 112
G ++ EG+ E + E + G
Sbjct: 862 GEEGEGEEEGEEGEGEGEEEEGEGEGEEEGEG 893
Score = 30.0 bits (66), Expect = 2.7
Identities = 27/89 (30%), Positives = 38/89 (42%), Gaps = 7/89 (7%)
Query: 20 GGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSE 79
G G + ++ G G G GE E + GE EEE G+G E GEG+G E
Sbjct: 871 GEEGEGEGEEEEGEGEGEEEGEGEGEEEEGEGEGEEE-GEGEGEEEE-----GEGKGEEE 924
Query: 80 PGSWV-IPLQDSTEGDREPGSPQAPAEKG 107
++ EG+ E G + E+G
Sbjct: 925 GEEGEGEGEEEEGEGEGEDGEGEGEEEEG 953
Score = 28.9 bits (63), Expect = 5.9
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 40 GHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGS 99
G GE E + GE EEE +G E GEG G E V + EG+ E G
Sbjct: 977 GEGEGEEEEGEGEGEEEEGEEEGEEEGEGEEEGEGEGEEEEEGEVEGEVEGEEGEGE-GE 1035
Query: 100 PQAPAEKGRK 109
+ E+G +
Sbjct: 1036 EEEGEEEGEE 1045
>gi|239751471 PREDICTED: hypothetical protein XP_002347846 [Homo
sapiens]
Length = 870
Score = 34.7 bits (78), Expect = 0.11
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 13/75 (17%)
Query: 23 GHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGS 82
G + RVAG SG G ++ G L G+G+P GEGRG SEP
Sbjct: 467 GRLRGRPGRVAGA--SGRRGASQARGGTGRAPARLRRGRGMPGRVGNGVGEGRGASEP-- 522
Query: 83 WVIPLQDSTEGDREP 97
EG+ EP
Sbjct: 523 ---------EGEPEP 528
>gi|239743315 PREDICTED: hypothetical protein XP_002342820 [Homo
sapiens]
Length = 248
Score = 33.1 bits (74), Expect = 0.31
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 22 WGHQKADDTRVAGPGLSGGHGEAEVLQQ---GGEEEEELHAGQGLPEACTAACGEGR-GV 77
W + AG G+ + E L + GGEE + AG G CG R GV
Sbjct: 42 WTAWSQQEQGAAGAGVRVALPQVEELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGV 101
Query: 78 SE---PGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKGFSQT 134
+ PGS +PL + + S +PA GR + WA K S +RK + +
Sbjct: 102 PQTRAPGS-PLPLGSVPDPRCDTASLPSPAGGGRTSC------WAPGKRSRTRRKSWRKV 154
Query: 135 A 135
A
Sbjct: 155 A 155
>gi|239508997 PREDICTED: hypothetical protein [Homo sapiens]
Length = 248
Score = 33.1 bits (74), Expect = 0.31
Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 14/121 (11%)
Query: 22 WGHQKADDTRVAGPGLSGGHGEAEVLQQ---GGEEEEELHAGQGLPEACTAACGEGR-GV 77
W + AG G+ + E L + GGEE + AG G CG R GV
Sbjct: 42 WTAWSQQEQGAAGAGVRVALPQVEELGRHDGGGEEAQAQEAGDGDERYILEGCGRARAGV 101
Query: 78 SE---PGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKGFSQT 134
+ PGS +PL + + S +PA GR + WA K S +RK + +
Sbjct: 102 PQTRAPGS-PLPLGSVPDPRCDTASLPSPAGGGRTSC------WAPGKRSRTRRKSWRKV 154
Query: 135 A 135
A
Sbjct: 155 A 155
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 32.7 bits (73), Expect = 0.41
Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 42 GEAEVLQQGG-----EEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDS--TEGD 94
G E LQ G ++EE AG G A GE + P + P++ EG+
Sbjct: 53 GAKEELQANGSAPAADKEEPAAAGSGAASPSAAEKGEPAAAAAPEAGASPVEKEAPAEGE 112
Query: 95 -REPGSPQAPAEKGRKASGFTKWPWA 119
EPGSP A + A+ T P A
Sbjct: 113 AAEPGSPTAAEGEAASAASSTSSPKA 138
>gi|190014636 hypothetical protein LOC286262 isoform 2 [Homo
sapiens]
Length = 678
Score = 32.7 bits (73), Expect = 0.41
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 209 LLDTDWTDMRPHNGSAPR--GHSPSSCVGGKEKPKIEISNVD-------GVPALCPSAHH 259
LL + P G A R G P S G+ KPK+E + G P+ P++
Sbjct: 159 LLSNGHSAPEPRAGPANRLAGSPPGS---GQWKPKVESGDPSLHPPPSPGTPSATPAS-- 213
Query: 260 PPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKV 292
PPA SA +QRQ S+ T + F RP + V
Sbjct: 214 PPA-SATPSQRQCVSAATSTNDSFEIRPAPKPV 245
>gi|190014638 hypothetical protein LOC286262 isoform 1 [Homo
sapiens]
Length = 650
Score = 32.7 bits (73), Expect = 0.41
Identities = 31/93 (33%), Positives = 42/93 (45%), Gaps = 15/93 (16%)
Query: 209 LLDTDWTDMRPHNGSAPR--GHSPSSCVGGKEKPKIEISNVD-------GVPALCPSAHH 259
LL + P G A R G P S G+ KPK+E + G P+ P++
Sbjct: 159 LLSNGHSAPEPRAGPANRLAGSPPGS---GQWKPKVESGDPSLHPPPSPGTPSATPAS-- 213
Query: 260 PPAWSAKAAQRQAASSVTHCSSDFLPRPKLRKV 292
PPA SA +QRQ S+ T + F RP + V
Sbjct: 214 PPA-SATPSQRQCVSAATSTNDSFEIRPAPKPV 245
>gi|28559065 DNA cytosine-5 methyltransferase 3 beta isoform 6 [Homo
sapiens]
Length = 845
Score = 32.3 bits (72), Expect = 0.54
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 198 SPHLPYHVVDLLLDTDWTDMRPHNGSAPRGH-SPSSCVGGKEKPKIEISNVDG 249
SP Y +DL DT+ T P + S P + S GG E P++E + DG
Sbjct: 172 SPPSSYLTIDLTDDTEDTHGTPQSSSTPYARLAQDSQQGGMESPQVEADSGDG 224
>gi|28559063 DNA cytosine-5 methyltransferase 3 beta isoform 3 [Homo
sapiens]
Length = 770
Score = 32.3 bits (72), Expect = 0.54
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 198 SPHLPYHVVDLLLDTDWTDMRPHNGSAPRGH-SPSSCVGGKEKPKIEISNVDG 249
SP Y +DL DT+ T P + S P + S GG E P++E + DG
Sbjct: 160 SPPSSYLTIDLTDDTEDTHGTPQSSSTPYARLAQDSQQGGMESPQVEADSGDG 212
>gi|28559061 DNA cytosine-5 methyltransferase 3 beta isoform 2 [Homo
sapiens]
Length = 833
Score = 32.3 bits (72), Expect = 0.54
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 198 SPHLPYHVVDLLLDTDWTDMRPHNGSAPRGH-SPSSCVGGKEKPKIEISNVDG 249
SP Y +DL DT+ T P + S P + S GG E P++E + DG
Sbjct: 160 SPPSSYLTIDLTDDTEDTHGTPQSSSTPYARLAQDSQQGGMESPQVEADSGDG 212
>gi|5901940 DNA cytosine-5 methyltransferase 3 beta isoform 1 [Homo
sapiens]
Length = 853
Score = 32.3 bits (72), Expect = 0.54
Identities = 19/53 (35%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Query: 198 SPHLPYHVVDLLLDTDWTDMRPHNGSAPRGH-SPSSCVGGKEKPKIEISNVDG 249
SP Y +DL DT+ T P + S P + S GG E P++E + DG
Sbjct: 160 SPPSSYLTIDLTDDTEDTHGTPQSSSTPYARLAQDSQQGGMESPQVEADSGDG 212
>gi|148727255 microtubule associated serine/threonine kinase family
member 4 isoform a [Homo sapiens]
Length = 2434
Score = 32.3 bits (72), Expect = 0.54
Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 16/89 (17%)
Query: 36 GLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDR 95
GLS H E + G E G+G PEA G+G PG P + TE D+
Sbjct: 2201 GLSFVHSENRLK---GAERPAAGVGKGFPEA------RGKG---PG----PQKPPTEADK 2244
Query: 96 EPGSPQAPAEKGRKASGFTKWPWASRKCS 124
G ++P+ G+ + T P S CS
Sbjct: 2245 PNGMKRSPSATGQSSFRSTALPEKSLSCS 2273
>gi|239752303 PREDICTED: hypothetical protein XP_002348193 [Homo
sapiens]
Length = 258
Score = 32.0 bits (71), Expect = 0.70
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 52 EEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSP---------QA 102
EEE E A P+ ++ RG P + P + ++ G PG P A
Sbjct: 69 EEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPA 128
Query: 103 PAEKGRKASGFTKWPW---------ASRKCS-GWKRKGFSQTASSFSTDDR 143
P+ + +WPW R C+ G +G +Q A S ST R
Sbjct: 129 PSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPR 179
>gi|239746814 PREDICTED: hypothetical protein XP_002343855 [Homo
sapiens]
Length = 258
Score = 32.0 bits (71), Expect = 0.70
Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 19/111 (17%)
Query: 52 EEEEELHAGQGLPEACTAACGEGRGVSEPGSWVIPLQDSTEGDREPGSP---------QA 102
EEE E A P+ ++ RG P + P + ++ G PG P A
Sbjct: 69 EEEAEAAAATRSPQPSSSGSSSSRGGGAPVARPEPGRAASPGSMVPGPPAPPPSGDQQPA 128
Query: 103 PAEKGRKASGFTKWPW---------ASRKCS-GWKRKGFSQTASSFSTDDR 143
P+ + +WPW R C+ G +G +Q A S ST R
Sbjct: 129 PSAGSGSTADLPEWPWPLQLLLLLAPGRGCARGRAGEGRAQCAGSPSTAPR 179
>gi|239747556 PREDICTED: hypothetical protein XP_002347648 [Homo
sapiens]
Length = 485
Score = 31.2 bits (69), Expect = 1.2
Identities = 30/128 (23%), Positives = 44/128 (34%), Gaps = 20/128 (15%)
Query: 11 WAGHSTKLVGGWGHQKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAA 70
W GH ++ G W H+ + ++ S ++ LQ GG+ P CTA
Sbjct: 191 WTGHWSQWTGLWYHEPPTGSLISS---SSPGPPSQALQLGGDRYHR------APSLCTAL 241
Query: 71 CGEGRGVSEPGSWVIPLQDSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKG 130
R + G + S G R + P + P A R CS R
Sbjct: 242 PKAMRRPEKTGEGIPATTRSAPGSRSARRREDP-----------RAPGAHRACSSCPRDS 290
Query: 131 FSQTASSF 138
S S+F
Sbjct: 291 PSTLCSAF 298
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 31.2 bits (69), Expect = 1.2
Identities = 27/74 (36%), Positives = 30/74 (40%), Gaps = 13/74 (17%)
Query: 222 GSAPRGHS-----PSSCVGGKEKPKIEISNVDGVPALCPSAHHPPAWSAKAAQRQAAS-- 274
G AP G S PSSC G P S +P P HHPP + AA QA +
Sbjct: 2311 GGAPSGGSGHSGGPSSCGGA---PSTSRSRPSRIPQ--PVRHHPPVLVSSAASSQAEADK 2365
Query: 275 -SVTHCSSDFLPRP 287
S T LP P
Sbjct: 2366 MSGTSTPGPSLPPP 2379
>gi|239756278 PREDICTED: hypothetical protein XP_002344871 [Homo
sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 41 HGEAEVLQQGGEEEEELHAG---------QGLPEAC---TAACGEGRGVSEPGSWVIPLQ 88
H ++ +Q E+++LH G LPE T + G GR V G W P
Sbjct: 37 HNTMKLTEQRAYEDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAP 96
Query: 89 DSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKG 130
+ G E G+P A + G + P + W+ G
Sbjct: 97 VMSHG--EAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPG 136
>gi|239750809 PREDICTED: hypothetical protein XP_002347567 [Homo
sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 41 HGEAEVLQQGGEEEEELHAG---------QGLPEAC---TAACGEGRGVSEPGSWVIPLQ 88
H ++ +Q E+++LH G LPE T + G GR V G W P
Sbjct: 37 HNTMKLTEQRAYEDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAP 96
Query: 89 DSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKG 130
+ G E G+P A + G + P + W+ G
Sbjct: 97 VMSHG--EAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPG 136
>gi|239745169 PREDICTED: hypothetical protein XP_002343388 [Homo
sapiens]
Length = 238
Score = 30.8 bits (68), Expect = 1.6
Identities = 26/102 (25%), Positives = 39/102 (38%), Gaps = 14/102 (13%)
Query: 41 HGEAEVLQQGGEEEEELHAG---------QGLPEAC---TAACGEGRGVSEPGSWVIPLQ 88
H ++ +Q E+++LH G LPE T + G GR V G W P
Sbjct: 37 HNTMKLTEQRAYEDDDLHGGGELAVQLRLAELPERAAVHTRSLGAGRVVRLAGIWRDPAP 96
Query: 89 DSTEGDREPGSPQAPAEKGRKASGFTKWPWASRKCSGWKRKG 130
+ G E G+P A + G + P + W+ G
Sbjct: 97 VMSHG--EAGTPAPRAARLGAPRGASPPPGEEGRAGAWRSPG 136
>gi|209862765 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 1.6
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 21/118 (17%)
Query: 9 LMWAGHST-KLVGGWGHQKADDTRVAGPGLS-GGHGEAEVLQQGGEEEEELHAGQGLPEA 66
L+ + HST +L G + D A G G G +E GGEEEEE + E
Sbjct: 1198 LLLSAHSTLQLARARGQEGPGDVDRAAQGERVKGVGASE----GGEEEEE---EEETEEV 1250
Query: 67 CTAACGEGRG----VSEPGSWV-------IPLQDSTEGDREP-GSPQAPAEKGRKASG 112
AA G GR + G W + + S EG R P GS + +EK + A G
Sbjct: 1251 AEAAGGSGRARWARGGQAGWWYQLMQSSQVYIDGSIEGSRFPRGSSNSSSEKKKGAGG 1308
>gi|55741719 RUN and SH3 domain containing 2 [Homo sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 1.6
Identities = 38/118 (32%), Positives = 50/118 (42%), Gaps = 21/118 (17%)
Query: 9 LMWAGHST-KLVGGWGHQKADDTRVAGPGLS-GGHGEAEVLQQGGEEEEELHAGQGLPEA 66
L+ + HST +L G + D A G G G +E GGEEEEE + E
Sbjct: 1198 LLLSAHSTLQLARARGQEGPGDVDRAAQGERVKGVGASE----GGEEEEE---EEETEEV 1250
Query: 67 CTAACGEGRG----VSEPGSWV-------IPLQDSTEGDREP-GSPQAPAEKGRKASG 112
AA G GR + G W + + S EG R P GS + +EK + A G
Sbjct: 1251 AEAAGGSGRARWARGGQAGWWYQLMQSSQVYIDGSIEGSRFPRGSSNSSSEKKKGAGG 1308
>gi|195947367 golgi autoantigen, golgin subfamily a, 8B [Homo
sapiens]
Length = 603
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 25 QKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWV 84
+ D + A PG GGH +A Q G E E AG G+ AACG SE
Sbjct: 459 EPGDSAKDASPG--GGHHQAGPGQGGEEGEAAGAAGDGV-----AACG---SYSEGHGKF 508
Query: 85 IPLQDSTEGDREPGSPQAPAEKG 107
+ + + PG+P AP E G
Sbjct: 509 LAAARNPAAEPSPGAP-APQELG 530
>gi|31083099 golgi autoantigen, golgin subfamily a, 8A [Homo
sapiens]
Length = 603
Score = 30.4 bits (67), Expect = 2.0
Identities = 28/83 (33%), Positives = 36/83 (43%), Gaps = 11/83 (13%)
Query: 25 QKADDTRVAGPGLSGGHGEAEVLQQGGEEEEELHAGQGLPEACTAACGEGRGVSEPGSWV 84
+ D + A PG GGH +A Q G E E AG G+ AACG SE
Sbjct: 459 EPGDSAKDASPG--GGHHQAGPGQGGEEGEAAGAAGDGV-----AACG---SYSEGHGKF 508
Query: 85 IPLQDSTEGDREPGSPQAPAEKG 107
+ + + PG+P AP E G
Sbjct: 509 LAAARNPAAEPSPGAP-APQELG 530
>gi|239752740 PREDICTED: hypothetical protein [Homo sapiens]
Length = 75
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 222 GSAPRGHSPSSCVGGKEKPKIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASS 275
G+AP G PS C GG ++ + ++G C HH A K + +A+SS
Sbjct: 23 GAAPAGSRPSHCRGGLS--ELGPTGLEGPAPPCHIHHHLEAVGGKTRRVRASSS 74
>gi|239747278 PREDICTED: hypothetical protein XP_002346415 [Homo
sapiens]
Length = 75
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Query: 222 GSAPRGHSPSSCVGGKEKPKIEISNVDGVPALCPSAHHPPAWSAKAAQRQAASS 275
G+AP G PS C GG ++ + ++G C HH A K + +A+SS
Sbjct: 23 GAAPAGSRPSHCRGGLS--ELGPTGLEGPAPPCHIHHHLEAVGGKTRRVRASSS 74
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.132 0.426
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,842,777
Number of Sequences: 37866
Number of extensions: 802320
Number of successful extensions: 2226
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 78
Number of HSP's that attempted gapping in prelim test: 2164
Number of HSP's gapped (non-prelim): 138
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.