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Search of human proteins with 239752170
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752170 PREDICTED: hypothetical protein [Homo sapiens]
(127 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239757680 PREDICTED: hypothetical protein [Homo sapiens] 268 1e-72
gi|239752170 PREDICTED: hypothetical protein [Homo sapiens] 268 1e-72
gi|239746693 PREDICTED: hypothetical protein [Homo sapiens] 268 1e-72
gi|4504187 glutathione S-transferase theta 2 [Homo sapiens] 33 0.045
gi|124249394 glutathione S-transferase theta 2B [Homo sapiens] 33 0.045
gi|239749957 PREDICTED: hypothetical protein [Homo sapiens] 30 0.65
gi|226371708 exocyst complex component 3-like 2 [Homo sapiens] 29 1.1
gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens] 28 1.9
gi|7662320 leucine-rich repeats and immunoglobulin-like domains ... 28 1.9
gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1 [... 28 2.5
gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2 [... 28 2.5
gi|14043022 methionyl-tRNA synthetase [Homo sapiens] 27 3.2
gi|145309320 forkhead box Q1 [Homo sapiens] 27 4.2
gi|167466164 glutathione S-transferase theta 1 [Homo sapiens] 27 4.2
gi|113416879 PREDICTED: hypothetical protein [Homo sapiens] 27 4.2
gi|116805342 human immunodeficiency virus type I enhancer bindin... 27 4.2
gi|112734870 hypothetical protein LOC57648 [Homo sapiens] 27 4.2
gi|5453754 NCK adaptor protein 1 [Homo sapiens] 27 5.5
gi|16306552 semaphorin Y [Homo sapiens] 27 5.5
gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo ... 26 7.2
gi|194294523 intersectin 2 isoform 3 [Homo sapiens] 26 7.2
gi|194294521 intersectin 2 isoform 1 [Homo sapiens] 26 7.2
gi|194294525 intersectin 2 isoform 2 [Homo sapiens] 26 7.2
gi|124107614 PR domain containing 13 [Homo sapiens] 26 7.2
gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens] 26 7.2
gi|29725635 otopetrin 1 [Homo sapiens] 26 7.2
gi|62865887 G protein-coupled receptor 54 [Homo sapiens] 26 9.4
gi|239753530 PREDICTED: hypothetical protein [Homo sapiens] 26 9.4
gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo ... 26 9.4
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 26 9.4
>gi|239757680 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 268 bits (684), Expect = 1e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI
Sbjct: 1 MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
Query: 61 SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP
Sbjct: 61 SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
Query: 121 YEGCPWY 127
YEGCPWY
Sbjct: 121 YEGCPWY 127
>gi|239752170 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 268 bits (684), Expect = 1e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI
Sbjct: 1 MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
Query: 61 SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP
Sbjct: 61 SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
Query: 121 YEGCPWY 127
YEGCPWY
Sbjct: 121 YEGCPWY 127
>gi|239746693 PREDICTED: hypothetical protein [Homo sapiens]
Length = 127
Score = 268 bits (684), Expect = 1e-72
Identities = 127/127 (100%), Positives = 127/127 (100%)
Query: 1 MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI
Sbjct: 1 MSTWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQI 60
Query: 61 SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP
Sbjct: 61 SLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
Query: 121 YEGCPWY 127
YEGCPWY
Sbjct: 121 YEGCPWY 127
>gi|4504187 glutathione S-transferase theta 2 [Homo sapiens]
Length = 244
Score = 33.5 bits (75), Expect = 0.045
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 29 QLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVKLSYPPALGGTLGMG 88
++ER + ALQ L+ L RPFLA +Q++L DL+ E +L P ALG L G
Sbjct: 131 KVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALE----ELMQPVALGYELFEG 186
>gi|124249394 glutathione S-transferase theta 2B [Homo sapiens]
Length = 244
Score = 33.5 bits (75), Expect = 0.045
Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 29 QLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVKLSYPPALGGTLGMG 88
++ER + ALQ L+ L RPFLA +Q++L DL+ E +L P ALG L G
Sbjct: 131 KVERNRTAMDQALQWLEDKFLGDRPFLAGQQVTLADLMALE----ELMQPVALGYELFEG 186
>gi|239749957 PREDICTED: hypothetical protein [Homo sapiens]
Length = 707
Score = 29.6 bits (65), Expect = 0.65
Identities = 29/127 (22%), Positives = 45/127 (35%), Gaps = 21/127 (16%)
Query: 1 MSTWRGSMSPSSCLPP-MSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAM-E 58
M WR + + PP ++ C R P + L GG + +L + +
Sbjct: 1 MGAWRATETSPPVRPPGLAACCR----------------PVQEVLVGGAVAGLLYLGLGD 44
Query: 59 QISLEDLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVT 118
+ + E + PP G L L+P+ S +P CR P R G +
Sbjct: 45 ALEMPLSFSPEAIAPPAPRPPPCRGPLDRDLAPSRSGGSWPQPCRLRSPAAR---RGEIC 101
Query: 119 GPYEGCP 125
P G P
Sbjct: 102 APRGGSP 108
>gi|226371708 exocyst complex component 3-like 2 [Homo sapiens]
Length = 409
Score = 28.9 bits (63), Expect = 1.1
Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 5 RGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLED 64
RG + SS R DAAQL+RL RL LD V P LA E + LED
Sbjct: 241 RGRLRCSSARTRSRVAGRLREDAAQLQRLFRRLESQASWLDAVV----PHLA-EVMQLED 295
Query: 65 L--VLTEVMQVKLSYP 78
+ EV + YP
Sbjct: 296 TPSIQVEVGVLVRDYP 311
>gi|38569491 serine/threonine-protein kinase QSK [Homo sapiens]
Length = 1263
Score = 28.1 bits (61), Expect = 1.9
Identities = 25/94 (26%), Positives = 41/94 (43%), Gaps = 9/94 (9%)
Query: 10 PSSCLPPMSTCARQPADAAQLERLLGRLTPAL------QHLDGGVLVARPFLAMEQISLE 63
PS+ PPMS+ QP AA + G + + ++ VA L M+Q +
Sbjct: 687 PSNSPPPMSSAMIQPHGAASSSQFQGLPSRSAIFQQQPENCSSPPNVALTCLGMQQPAQS 746
Query: 64 DLVLTEVMQ---VKLSYPPALGGTLGMGLSPNPS 94
V +V + + + P G+ G G+S +PS
Sbjct: 747 QQVTIQVQEPVDMLSNMPGTAAGSSGRGISISPS 780
>gi|7662320 leucine-rich repeats and immunoglobulin-like domains 2
[Homo sapiens]
Length = 1065
Score = 28.1 bits (61), Expect = 1.9
Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 7/69 (10%)
Query: 9 SPSSCLPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLT 68
+P SC P+ C+R+ A L G L P LD + L+ ISLE L
Sbjct: 45 APCSCRIPLLDCSRRKLPAPSWRALSGLLPPDTAILD----FSHNRLSNWNISLESQTLQ 100
Query: 69 EVMQVKLSY 77
E VK++Y
Sbjct: 101 E---VKMNY 106
>gi|157738615 coiled-coil alpha-helical rod protein 1 isoform 1
[Homo sapiens]
Length = 871
Score = 27.7 bits (60), Expect = 2.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 4 WRGSMSPSSCLPPMSTCARQPADAAQLER 32
WR P C+PP S AR D L R
Sbjct: 43 WRWRSRPLHCVPPFSPLARSSRDHRNLRR 71
>gi|157738613 coiled-coil alpha-helical rod protein 1 isoform 2
[Homo sapiens]
Length = 835
Score = 27.7 bits (60), Expect = 2.5
Identities = 12/29 (41%), Positives = 13/29 (44%)
Query: 4 WRGSMSPSSCLPPMSTCARQPADAAQLER 32
WR P C+PP S AR D L R
Sbjct: 43 WRWRSRPLHCVPPFSPLARSSRDHRNLRR 71
>gi|14043022 methionyl-tRNA synthetase [Homo sapiens]
Length = 900
Score = 27.3 bits (59), Expect = 3.2
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 31 ERLLGRLTPALQHLDGGVLVAR-PFLAMEQISLEDLVLTEVMQVKLSYPPAL 81
E +LG + AL H+D + PFLA E SL D+VL + L P L
Sbjct: 111 EDVLGSVRRALTHIDHSLSRQNCPFLAGETESLADIVLWGALYPLLQDPAYL 162
>gi|145309320 forkhead box Q1 [Homo sapiens]
Length = 403
Score = 26.9 bits (58), Expect = 4.2
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 64 DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFP-----AHCRWLRPL 108
D +L + + + A G TL G +P P P FP A CR L PL
Sbjct: 274 DSILRKPFRSRRLRDTAPGTTLQWGAAPCPPLPAFPALLPAAPCRALLPL 323
>gi|167466164 glutathione S-transferase theta 1 [Homo sapiens]
Length = 240
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 23 QPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLV-LTEVM 71
+P L L L LQ L+ L + FL ISL DLV +TE+M
Sbjct: 126 EPVSPQTLAATLAELDVTLQLLEDKFLQNKAFLTGPHISLADLVAITELM 175
>gi|113416879 PREDICTED: hypothetical protein [Homo sapiens]
Length = 175
Score = 26.9 bits (58), Expect = 4.2
Identities = 16/48 (33%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 78 PPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGPYEGCP 125
PP G G P P+ P CR P P AG + GP+ P
Sbjct: 45 PPRPGEEPGNRHPPPPAARTHPGSCRARCPSP---AAGGLRGPWTAAP 89
>gi|116805342 human immunodeficiency virus type I enhancer binding
protein 1 [Homo sapiens]
Length = 2718
Score = 26.9 bits (58), Expect = 4.2
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 24 PADAAQLERL-----LGRL-TPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVKLSY 77
PA A+L + +G++ P LQ+L L + P L+ME +++ L T + +
Sbjct: 2454 PAGVAELSSVVPCIPIGQIRVPGLQNLSTPGLQSLPSLSMETVNIVGLANTNM--APQVH 2511
Query: 78 PPALG-GTLGMG-LSPNPSCPVFPA 100
PP L +G+ L+ NPS PA
Sbjct: 2512 PPGLALNAVGLQVLTANPSSQSSPA 2536
>gi|112734870 hypothetical protein LOC57648 [Homo sapiens]
Length = 1094
Score = 26.9 bits (58), Expect = 4.2
Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 7/49 (14%)
Query: 72 QVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGP 120
Q +L PP GG+ G G +P CP PA+ W +P L+ GS P
Sbjct: 530 QPQLPRPPTTGGSEGAGAAP---CPPNPAN-SW---VPGLSPGGSRRPP 571
>gi|5453754 NCK adaptor protein 1 [Homo sapiens]
Length = 377
Score = 26.6 bits (57), Expect = 5.5
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 14/43 (32%)
Query: 85 LGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGPYEGCPWY 127
L GL P+P C ++RP S+TG + G PWY
Sbjct: 255 LTSGLEPSPP------QCDYIRP--------SLTGKFAGNPWY 283
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 26.6 bits (57), Expect = 5.5
Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 4/109 (3%)
Query: 15 PPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVK 74
PP C Q + LE LL L G A P + +L ++
Sbjct: 752 PPPPGCPGQAVEVTTLEELLRYLHGPQPPRKG----AEPPAPLTSRALPPEPAPALLGGP 807
Query: 75 LSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPLPRLALAGSVTGPYEG 123
P L + + P C PA P PRL + G P+ G
Sbjct: 808 SPRPHECASPLRLDVPPEGRCASAPARPALSAPAPRLGVGGGRRLPFSG 856
>gi|148762969 myeloid/lymphoid or mixed-lineage leukemia 2 [Homo
sapiens]
Length = 5537
Score = 26.2 bits (56), Expect = 7.2
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 5/62 (8%)
Query: 53 PFLAMEQISLEDLVLTEVMQVKLSYPPALGGT-----LGMGLSPNPSCPVFPAHCRWLRP 107
PF A E + +++ +S PP T M L P+P PV PA + P
Sbjct: 960 PFGAKGDSDPESPLAAPILETPISPPPEANCTDPEPVPPMILPPSPGSPVGPASPILMEP 1019
Query: 108 LP 109
LP
Sbjct: 1020 LP 1021
>gi|194294523 intersectin 2 isoform 3 [Homo sapiens]
Length = 1670
Score = 26.2 bits (56), Expect = 7.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 55 LAMEQISLE------DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPL 108
+AM+ I L+ +VL +M+ + P + GMG PN S P +PL
Sbjct: 81 IAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIP---------QPL 131
Query: 109 PRLALAGSVTGPYEG 123
P A S++ G
Sbjct: 132 PPAAPITSLSSATSG 146
>gi|194294521 intersectin 2 isoform 1 [Homo sapiens]
Length = 1697
Score = 26.2 bits (56), Expect = 7.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 55 LAMEQISLE------DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPL 108
+AM+ I L+ +VL +M+ + P + GMG PN S P +PL
Sbjct: 81 IAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIP---------QPL 131
Query: 109 PRLALAGSVTGPYEG 123
P A S++ G
Sbjct: 132 PPAAPITSLSSATSG 146
>gi|194294525 intersectin 2 isoform 2 [Homo sapiens]
Length = 1249
Score = 26.2 bits (56), Expect = 7.2
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 15/75 (20%)
Query: 55 LAMEQISLE------DLVLTEVMQVKLSYPPALGGTLGMGLSPNPSCPVFPAHCRWLRPL 108
+AM+ I L+ +VL +M+ + P + GMG PN S P +PL
Sbjct: 81 IAMKLIKLKLQGQQLPVVLPPIMKQPPMFSPLISARFGMGSMPNLSIP---------QPL 131
Query: 109 PRLALAGSVTGPYEG 123
P A S++ G
Sbjct: 132 PPAAPITSLSSATSG 146
>gi|124107614 PR domain containing 13 [Homo sapiens]
Length = 707
Score = 26.2 bits (56), Expect = 7.2
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 86 GMGLSPNPSCPVF--PAHCRWLRPLP 109
G+GLSP P P F P+ LRP P
Sbjct: 187 GLGLSPKPPAPDFAAPSQAGTLRPHP 212
>gi|93102358 cell death-inducing DFFA-like effector b [Homo sapiens]
Length = 219
Score = 26.2 bits (56), Expect = 7.2
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 17 MSTCARQPADAAQLERLL--GRLTPALQHLDGGVLVARPFLAMEQISLEDLVLTEVMQVK 74
++ RQ A LE LL G LT L+ DG + + F + LED V+Q
Sbjct: 51 LTAATRQELLAKALETLLLNGVLTLVLEE-DGTAVDSEDFFQL----LEDDTCLMVLQSG 105
Query: 75 LSYPPALGGTLGMGL 89
S+ P G L GL
Sbjct: 106 QSWSPTRSGVLSYGL 120
>gi|29725635 otopetrin 1 [Homo sapiens]
Length = 612
Score = 26.2 bits (56), Expect = 7.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 6 GSMSPSSCLPPMSTCARQPADAA 28
GS P++C PP S+ R P A
Sbjct: 21 GSSGPAACSPPSSSAPRSPESPA 43
>gi|62865887 G protein-coupled receptor 54 [Homo sapiens]
Length = 398
Score = 25.8 bits (55), Expect = 9.4
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 14 LPPMSTCARQPADAAQLERLLGRLTPALQHLDGGVLVARPFLAMEQIS 61
LP ++TCA A L R+ R PA L G VL R ++S
Sbjct: 215 LPLLATCACYAAMLRHLGRVAVRPAPADSALQGQVLAERAGAVRAKVS 262
>gi|239753530 PREDICTED: hypothetical protein [Homo sapiens]
Length = 340
Score = 25.8 bits (55), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 2 STWRGSMSPSSCLPPMSTCARQP 24
ST+RG M +SCLP M + P
Sbjct: 114 STYRGDMVTNSCLPLMGSYGPDP 136
>gi|239742029 PREDICTED: hypothetical protein XP_002342375 [Homo
sapiens]
Length = 340
Score = 25.8 bits (55), Expect = 9.4
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 2 STWRGSMSPSSCLPPMSTCARQP 24
ST+RG M +SCLP M + P
Sbjct: 114 STYRGDMVTNSCLPLMGSYGPDP 136
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 25.8 bits (55), Expect = 9.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 2 STWRGSMSPSSCLPPMSTCARQPADAAQLERLLGRLTPA 40
ST S SPS+ LP T + A+++++ + PA
Sbjct: 553 STGPSSRSPSTLLPKKPTAIKTEGKPAEVKKMTAKSVPA 591
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.451
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,965,957
Number of Sequences: 37866
Number of extensions: 266763
Number of successful extensions: 786
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 768
Number of HSP's gapped (non-prelim): 39
length of query: 127
length of database: 18,247,518
effective HSP length: 90
effective length of query: 37
effective length of database: 14,839,578
effective search space: 549064386
effective search space used: 549064386
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.