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Search of human proteins with 239752008
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239752008 PREDICTED: hypothetical protein XP_002348065 [Homo
sapiens]
(355 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239752008 PREDICTED: hypothetical protein XP_002348065 [Homo ... 718 0.0
gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo ... 568 e-162
gi|239754717 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|239749265 PREDICTED: hypothetical protein [Homo sapiens] 35 0.13
gi|239743362 PREDICTED: hypothetical protein XP_002342841 [Homo ... 35 0.13
gi|239509054 PREDICTED: similar to RAB19, member RAS oncogene fa... 35 0.13
gi|20373175 musashi 2 isoform a [Homo sapiens] 34 0.23
gi|4505255 musashi 1 [Homo sapiens] 33 0.51
gi|239754979 PREDICTED: hypothetical protein [Homo sapiens] 33 0.51
gi|41281808 harmonin isoform b3 [Homo sapiens] 32 0.87
gi|26051204 calcium/calmodulin-dependent protein kinase II beta ... 32 1.1
gi|157743257 POU domain, class 6, transcription factor 2 [Homo s... 32 1.1
gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens] 32 1.1
gi|224589135 RGM domain family, member B [Homo sapiens] 31 1.5
gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo ... 31 1.5
gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo ... 31 1.5
gi|239753975 PREDICTED: hypothetical protein [Homo sapiens] 31 1.5
gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo ... 31 1.5
gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo ... 31 1.5
gi|167614488 TBC1 domain family, member 10B [Homo sapiens] 31 1.5
gi|16306552 semaphorin Y [Homo sapiens] 31 1.5
gi|163965366 nascent polypeptide-associated complex alpha subuni... 31 1.5
gi|239753123 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens] 31 1.9
gi|169179422 PREDICTED: hypothetical protein [Homo sapiens] 31 1.9
gi|239747686 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens] 31 1.9
gi|239741555 PREDICTED: kelch repeat and BTB (POZ) domain contai... 31 1.9
gi|40806175 diacylglycerol kinase, theta [Homo sapiens] 31 1.9
gi|21687188 hypothetical protein LOC146325 [Homo sapiens] 31 1.9
gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens] 31 1.9
gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo ... 30 2.5
>gi|239752008 PREDICTED: hypothetical protein XP_002348065 [Homo
sapiens]
Length = 355
Score = 718 bits (1854), Expect = 0.0
Identities = 355/355 (100%), Positives = 355/355 (100%)
Query: 1 MSSVRPCPITIQPLVPYIVTPPRKRDLERDLEVALFGGGDTERAFEGGTGSGELERDWLL 60
MSSVRPCPITIQPLVPYIVTPPRKRDLERDLEVALFGGGDTERAFEGGTGSGELERDWLL
Sbjct: 1 MSSVRPCPITIQPLVPYIVTPPRKRDLERDLEVALFGGGDTERAFEGGTGSGELERDWLL 60
Query: 61 DLDFDFISPFPFSLGDRDRDLLRDFSYSSLDLLRECEWEPRSDLGLDLLFDLDFLPFDRE 120
DLDFDFISPFPFSLGDRDRDLLRDFSYSSLDLLRECEWEPRSDLGLDLLFDLDFLPFDRE
Sbjct: 61 DLDFDFISPFPFSLGDRDRDLLRDFSYSSLDLLRECEWEPRSDLGLDLLFDLDFLPFDRE 120
Query: 121 RDRPLLRDLELDKERPIFSILMSFNKLPGSASRVRSPMACAWLIFNKPNISAIYFCAIQF 180
RDRPLLRDLELDKERPIFSILMSFNKLPGSASRVRSPMACAWLIFNKPNISAIYFCAIQF
Sbjct: 121 RDRPLLRDLELDKERPIFSILMSFNKLPGSASRVRSPMACAWLIFNKPNISAIYFCAIQF 180
Query: 181 VQSTLHVRVGAKLNYTLICSFLVGIRIGYFTCLSHKILKDKIGNSHLVQINQFCLTLGIL 240
VQSTLHVRVGAKLNYTLICSFLVGIRIGYFTCLSHKILKDKIGNSHLVQINQFCLTLGIL
Sbjct: 181 VQSTLHVRVGAKLNYTLICSFLVGIRIGYFTCLSHKILKDKIGNSHLVQINQFCLTLGIL 240
Query: 241 TITLRLMAKGCCRHGFRQRGSGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGL 300
TITLRLMAKGCCRHGFRQRGSGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGL
Sbjct: 241 TITLRLMAKGCCRHGFRQRGSGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGL 300
Query: 301 TAASVAVAVAIATRAPGVLYDHALAAELLAVQLVNGVVGVAGVLELHEAARLTHF 355
TAASVAVAVAIATRAPGVLYDHALAAELLAVQLVNGVVGVAGVLELHEAARLTHF
Sbjct: 301 TAASVAVAVAIATRAPGVLYDHALAAELLAVQLVNGVVGVAGVLELHEAARLTHF 355
>gi|239746493 PREDICTED: hypothetical protein XP_002343745 [Homo
sapiens]
Length = 529
Score = 568 bits (1465), Expect = e-162
Identities = 290/311 (93%), Positives = 292/311 (93%), Gaps = 13/311 (4%)
Query: 47 GGTGSGELE-RDW-LLDLDFDFISPFPFSLGDRDRDLLRDFSYSSLDLLRECEWEPRSDL 104
GG G+ ELE R W +L GDRDRDLLRDFSYSSLDLLRECEWEPRSDL
Sbjct: 230 GGAGTAELEERAWRATELS-----------GDRDRDLLRDFSYSSLDLLRECEWEPRSDL 278
Query: 105 GLDLLFDLDFLPFDRERDRPLLRDLELDKERPIFSILMSFNKLPGSASRVRSPMACAWLI 164
GLDLLFDLDFLPFDRERDRPLLRDLELDKERPIFSILMSFNKLPGSASRVRSPMACAWLI
Sbjct: 279 GLDLLFDLDFLPFDRERDRPLLRDLELDKERPIFSILMSFNKLPGSASRVRSPMACAWLI 338
Query: 165 FNKPNISAIYFCAIQFVQSTLHVRVGAKLNYTLICSFLVGIRIGYFTCLSHKILKDKIGN 224
FNKPNISAIYFCAIQFVQSTLHVRVGAKLNYTLICSFLVGIRIGYFTCLSHKILKDKIGN
Sbjct: 339 FNKPNISAIYFCAIQFVQSTLHVRVGAKLNYTLICSFLVGIRIGYFTCLSHKILKDKIGN 398
Query: 225 SHLVQINQFCLTLGILTITLRLMAKGCCRHGFRQRGSGTPKSNDPRPSRLPGLGGPTPPT 284
SHLVQINQFCLTLGILTITLRLMAKGCCRHGFRQRGSGTPKSNDPRPSRLPGLGGPTPPT
Sbjct: 399 SHLVQINQFCLTLGILTITLRLMAKGCCRHGFRQRGSGTPKSNDPRPSRLPGLGGPTPPT 458
Query: 285 PAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVLYDHALAAELLAVQLVNGVVGVAGVL 344
PAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVLYDHALAAELLAVQLVNGVVGVAGVL
Sbjct: 459 PAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVLYDHALAAELLAVQLVNGVVGVAGVL 518
Query: 345 ELHEAARLTHF 355
ELHEAARLTHF
Sbjct: 519 ELHEAARLTHF 529
>gi|239754717 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 270 RPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVL 319
+P LP L P PP PAPR GA G+G+ A A AVA A AP V+
Sbjct: 61 QPPPLPSL--PPPPPPAPR--DGAVTVGIGVGEA--AAAVAAAAPAPDVV 104
>gi|239749265 PREDICTED: hypothetical protein [Homo sapiens]
Length = 229
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 270 RPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVL 319
+P LP L P PP PAPR GA G+G+ A A AVA A AP V+
Sbjct: 61 QPPPLPSL--PPPPPPAPR--DGAVTVGIGVGEA--AAAVAAAAPAPDVV 104
>gi|239743362 PREDICTED: hypothetical protein XP_002342841 [Homo
sapiens]
Length = 229
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 270 RPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVL 319
+P LP L P PP PAPR GA G+G+ A A AVA A AP V+
Sbjct: 61 QPPPLPSL--PPPPPPAPR--DGAVTVGIGVGEA--AAAVAAAAPAPDVV 104
>gi|239509054 PREDICTED: similar to RAB19, member RAS oncogene
family [Homo sapiens]
Length = 339
Score = 34.7 bits (78), Expect = 0.13
Identities = 24/50 (48%), Positives = 28/50 (56%), Gaps = 6/50 (12%)
Query: 270 RPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVL 319
+P LP L P PP PAPR GA G+G+ A A AVA A AP V+
Sbjct: 171 QPPPLPSL--PPPPPPAPR--DGAVTVGIGVGEA--AAAVAAAAPAPDVV 214
>gi|20373175 musashi 2 isoform a [Homo sapiens]
Length = 328
Score = 33.9 bits (76), Expect = 0.23
Identities = 24/78 (30%), Positives = 32/78 (41%), Gaps = 12/78 (15%)
Query: 259 RGSGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAPGV 318
RGSG SN RP PG P P A+ G + V ++ A+ PG
Sbjct: 261 RGSG---SNPARPGGFPGANSPGPV---------ADLYGPASQDSGVGNYISAASPQPGS 308
Query: 319 LYDHALAAELLAVQLVNG 336
+ H +A L+A NG
Sbjct: 309 GFGHGIAGPLIATAFTNG 326
>gi|4505255 musashi 1 [Homo sapiens]
Length = 362
Score = 32.7 bits (73), Expect = 0.51
Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
Query: 271 PSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAPGVLYDHALAAELLA 330
PSR G G T P P AE G + V+ ++ A+ AP + H+L L+A
Sbjct: 301 PSRTGGFLGTTSPGPM------AELYGAANQDSGVSSYISAASPAPSTGFGHSLGGPLIA 354
Query: 331 VQLVNG 336
NG
Sbjct: 355 TAFTNG 360
>gi|239754979 PREDICTED: hypothetical protein [Homo sapiens]
Length = 780
Score = 32.7 bits (73), Expect = 0.51
Identities = 29/84 (34%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 275 PGLGGPTPPTPAPR------VPKGAERAGVGLTAASVAVAVAIATRAPGVLYDHALAAE- 327
P GP PP P P VP G+E G A + V AP L + AL A
Sbjct: 483 PSRSGPLPPLPGPGTGTLPLVPVGSELREAGPGAQGEVIRVRETRAAPAKLLEQALRARR 542
Query: 328 --------LLAVQLVNGVVGVAGV 343
LL V+LV V VAG+
Sbjct: 543 RELRVPLVLLLVELV--TVEVAGL 564
>gi|41281808 harmonin isoform b3 [Homo sapiens]
Length = 899
Score = 32.0 bits (71), Expect = 0.87
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 9/91 (9%)
Query: 254 HGFRQRGSGTP------KSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAV 307
H FR +G P K++ +P+ P PPTP P G G++ S V
Sbjct: 633 HPFRTGDTGNPVEDWEAKNHSGKPTNSPVPEQSFPPTPKTFCPSPQPPRGPGVSTISKPV 692
Query: 308 AVAIATRAPGVLYDHALAAELLAVQLVNGVV 338
V + P +Y A+ +E+L +++ +V
Sbjct: 693 MV---HQEPNFIYRPAVKSEVLPQEMLKRMV 720
>gi|26051204 calcium/calmodulin-dependent protein kinase II beta
isoform 1 [Homo sapiens]
Length = 666
Score = 31.6 bits (70), Expect = 1.1
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 258 QRGSGTPKSNDPRPSRLPGLGGPTPPTPAP 287
+RGSGTP++ P P P PT P P P
Sbjct: 501 RRGSGTPEAEGPSPVGPPPCPSPTIPGPLP 530
Score = 28.5 bits (62), Expect = 9.6
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 258 QRGSGTPKSNDPRPSRLPGLGGPTPPTPAPRV 289
+RGSG P++ P P P P P P+PR+
Sbjct: 420 RRGSGAPEAEGPLPCPSPAPFSPL-PAPSPRI 450
>gi|157743257 POU domain, class 6, transcription factor 2 [Homo
sapiens]
Length = 691
Score = 31.6 bits (70), Expect = 1.1
Identities = 27/90 (30%), Positives = 46/90 (51%), Gaps = 8/90 (8%)
Query: 261 SGTPKSNDP--RPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAPGV 318
S T +S+ P +PS+ PG G P+P TP P + L + + A A A+++ A
Sbjct: 264 SPTQQSSSPPQKPSQSPGHGLPSPLTP----PNPLQLVNNPLASQAAAAAAAMSSIASSQ 319
Query: 319 LYDHALAA-ELLAVQLVNGVVG-VAGVLEL 346
+ +AL++ + + QLV G + G + L
Sbjct: 320 AFGNALSSLQGVTGQLVTNAQGQIIGTIPL 349
>gi|116008442 zinc finger CCCH-type containing 13 [Homo sapiens]
Length = 1564
Score = 31.6 bits (70), Expect = 1.1
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
Query: 23 RKRDLERDLEVALFGGGDTERAFEGGTGSGELERDWLLDLDFDFISPFPFSLG-DRDRDL 81
R+R+ +RD + D +R E E ERD DLD + S+ DRDRD
Sbjct: 1319 RQREWDRDADKDWPRNRDRDRLRER---ERERERDKRRDLDRERERLISDSVERDRDRDR 1375
Query: 82 LRDFSYSSLDLLRECEWEPRSDLGLDL-LFDLDFLPFDRER 121
R F S ++ ++ CE + + DL D L D+ER
Sbjct: 1376 DRTFESSQIESVKRCEAKLEGEHERDLESTSRDSLALDKER 1416
>gi|224589135 RGM domain family, member B [Homo sapiens]
Length = 478
Score = 31.2 bits (69), Expect = 1.5
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 11/66 (16%)
Query: 257 RQRGSGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIA---- 312
R G +S+ PRP+ P PP+P P P G+GL AA + A A A
Sbjct: 8 RSAPPGPCRSHGPRPATAPA----PPPSPEPTRPAW---TGMGLRAAPSSAAAAAAEVEQ 60
Query: 313 TRAPGV 318
R+PG+
Sbjct: 61 RRSPGL 66
>gi|110347459 MYC-associated zinc finger protein isoform 2 [Homo
sapiens]
Length = 493
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 280 PTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAP 316
P PP P P V A A +AA++A A A A AP
Sbjct: 131 PAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAP 167
>gi|110347461 MYC-associated zinc finger protein isoform 1 [Homo
sapiens]
Length = 477
Score = 31.2 bits (69), Expect = 1.5
Identities = 16/37 (43%), Positives = 19/37 (51%)
Query: 280 PTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAP 316
P PP P P V A A +AA++A A A A AP
Sbjct: 131 PAPPPPPPPVSAPAAEAAPPASAATIAAAAATAVVAP 167
>gi|239753975 PREDICTED: hypothetical protein [Homo sapiens]
Length = 389
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 271 PSRLPGLGGPTPPT--PAPRV--------PKGAERAGVGLTAASVAVAVAIATRAPGVLY 320
P+ P GG T P+ PAPR+ G R G A AP L
Sbjct: 308 PAAFPLQGGATLPSSLPAPRLHLGSLLPSSSGGARLGDAAGTTHFQPAHLSHAAAPASLT 367
Query: 321 DHALAAELLAVQLVNGVVG 339
DH+ A L+ L +GV G
Sbjct: 368 DHSFARPLVTEHLAHGVSG 386
>gi|239748510 PREDICTED: hypothetical protein XP_002346712 [Homo
sapiens]
Length = 336
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 271 PSRLPGLGGPTPPT--PAPRV--------PKGAERAGVGLTAASVAVAVAIATRAPGVLY 320
P+ P GG T P+ PAPR+ G R G A AP L
Sbjct: 255 PAAFPLQGGATLPSSLPAPRLHLGSLLPSSSGGARLGDAAGTTHFQPAHLSHAAAPASLT 314
Query: 321 DHALAAELLAVQLVNGVVG 339
DH+ A L+ L +GV G
Sbjct: 315 DHSFARPLVTEHLAHGVSG 333
>gi|239742481 PREDICTED: hypothetical protein XP_002342546 [Homo
sapiens]
Length = 359
Score = 31.2 bits (69), Expect = 1.5
Identities = 25/79 (31%), Positives = 31/79 (39%), Gaps = 10/79 (12%)
Query: 271 PSRLPGLGGPTPPT--PAPRV--------PKGAERAGVGLTAASVAVAVAIATRAPGVLY 320
P+ P GG T P+ PAPR+ G R G A AP L
Sbjct: 278 PAAFPLQGGATLPSSLPAPRLHLGSLLPSSSGGARLGDAAGTTHFQPAHLSHAAAPASLT 337
Query: 321 DHALAAELLAVQLVNGVVG 339
DH+ A L+ L +GV G
Sbjct: 338 DHSFARPLVTEHLAHGVSG 356
>gi|167614488 TBC1 domain family, member 10B [Homo sapiens]
Length = 808
Score = 31.2 bits (69), Expect = 1.5
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 260 GSGTPKSNDPRPSRLPGLGGPT-PPTPAP-RVPKGAERAGVGLT---AASVAVAVAIATR 314
G+ +PK+ + RPS PG G PT PT P R GA A L +VA V +
Sbjct: 129 GADSPKTEEARPSPAPGPGTPTGTPTRTPSRTAPGALTAKPPLAPKPGTTVASGVTARSA 188
Query: 315 APGVLYDHALAA 326
+ V H AA
Sbjct: 189 SGQVTGGHGAAA 200
>gi|16306552 semaphorin Y [Homo sapiens]
Length = 930
Score = 31.2 bits (69), Expect = 1.5
Identities = 17/46 (36%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 246 LMAKGCCRHGFRQRGSGTPKSNDPRPSRLPGL-----GGPTPPTPA 286
L+ CR R+RG PRP L L GGP PP P+
Sbjct: 623 LLVSCACRRAHRRRGKDIETPGLPRPLSLRSLARLHGGGPEPPPPS 668
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 31.2 bits (69), Expect = 1.5
Identities = 14/31 (45%), Positives = 16/31 (51%)
Query: 263 TPKSNDPRPSRLPGLGGPTPPTPAPRVPKGA 293
TP S P+ P G PTPP P PKG+
Sbjct: 1293 TPPSPKGGPATSPPKGAPTPPAATPPSPKGS 1323
Score = 30.4 bits (67), Expect = 2.5
Identities = 14/32 (43%), Positives = 15/32 (46%)
Query: 261 SGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKG 292
+ TP S P P G PTPP P PKG
Sbjct: 1314 AATPPSPKGSPGTPPPKGAPTPPAVTPPSPKG 1345
Score = 28.5 bits (62), Expect = 9.6
Identities = 14/36 (38%), Positives = 17/36 (47%)
Query: 261 SGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERA 296
+ TP S P+ G PTPP P PKG+ A
Sbjct: 990 AATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAA 1025
>gi|239753123 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens]
Length = 875
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 260 GSGTPKSNDPRPSRLP----GLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRA 315
G GT S RP LP PTP T G+ A L A+S A A+ T+A
Sbjct: 40 GGGTASSLSVRPGLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASS---ASAVTTKA 96
Query: 316 PGV 318
PG+
Sbjct: 97 PGI 99
>gi|169179422 PREDICTED: hypothetical protein [Homo sapiens]
Length = 645
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/41 (41%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Query: 257 RQRGSGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAG 297
R+ GS T PRP R+PG G + P P GAE G
Sbjct: 559 RRPGSATA----PRPLRVPGRGAQSAEPGTPPSPPGAEHGG 595
>gi|239747686 PREDICTED: kelch-like 29 (Drosophila) [Homo sapiens]
Length = 702
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 260 GSGTPKSNDPRPSRLP----GLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRA 315
G GT S RP LP PTP T G+ A L A+S A A+ T+A
Sbjct: 40 GGGTASSLSVRPGLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASS---ASAVTTKA 96
Query: 316 PGV 318
PG+
Sbjct: 97 PGI 99
>gi|239741555 PREDICTED: kelch repeat and BTB (POZ) domain
containing 9 [Homo sapiens]
Length = 875
Score = 30.8 bits (68), Expect = 1.9
Identities = 23/63 (36%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
Query: 260 GSGTPKSNDPRPSRLP----GLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRA 315
G GT S RP LP PTP T G+ A L A+S A A+ T+A
Sbjct: 40 GGGTASSLSVRPGLLPLPVVPSRLPTPATAPAPCTTGSSEAITSLVASS---ASAVTTKA 96
Query: 316 PGV 318
PG+
Sbjct: 97 PGI 99
>gi|40806175 diacylglycerol kinase, theta [Homo sapiens]
Length = 942
Score = 30.8 bits (68), Expect = 1.9
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 260 GSGTPKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGV 298
G G+P+ P S + G GG P P P G ERAGV
Sbjct: 14 GGGSPRPGSPACSPVLGSGGRARPGPGP--GPGPERAGV 50
>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
Length = 571
Score = 30.8 bits (68), Expect = 1.9
Identities = 16/40 (40%), Positives = 17/40 (42%)
Query: 264 PKSNDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAA 303
P+ DP PG GP P P VP E G LT A
Sbjct: 372 PEDGDPGGPETPGPEGPLPLQPRGPVPGSPEHVGEDLTRA 411
>gi|39930517 sterile alpha motif domain containing 1 [Homo sapiens]
Length = 538
Score = 30.8 bits (68), Expect = 1.9
Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
Query: 258 QRGSGTPKS-NDPRPSRLPGLGGPTPPTPAPRVPKGAERAGVGLTAASVAVAVAIATRAP 316
+RG+ P PR + PPTPAP P A A A A A A +P
Sbjct: 103 RRGATPPAPPRAPRGAPAAAAAAAPPPTPAPPPPPAPVAAAAPARAPRAAAAAATAPPSP 162
Query: 317 G 317
G
Sbjct: 163 G 163
>gi|239757337 PREDICTED: hypothetical protein XP_002345251 [Homo
sapiens]
Length = 330
Score = 30.4 bits (67), Expect = 2.5
Identities = 27/80 (33%), Positives = 31/80 (38%), Gaps = 27/80 (33%)
Query: 260 GSGTPKSNDPRPS--------RLPGLG----GPTPPTPAPRVPKGA--------ERAGVG 299
GSG P+ DPRP + G G GP P P PR P ER G
Sbjct: 204 GSGDPRWGDPRPGEGFTARFLQPRGCGREFSGPFPSRPGPRTPVPTAPYLAVLPERGGRA 263
Query: 300 LTAASVAVAVAIATRAPGVL 319
LT ++A R PG L
Sbjct: 264 LTTPALA-------RTPGSL 276
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.325 0.143 0.441
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,146,001
Number of Sequences: 37866
Number of extensions: 812795
Number of successful extensions: 6193
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 94
Number of HSP's that attempted gapping in prelim test: 5888
Number of HSP's gapped (non-prelim): 353
length of query: 355
length of database: 18,247,518
effective HSP length: 103
effective length of query: 252
effective length of database: 14,347,320
effective search space: 3615524640
effective search space used: 3615524640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.