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Search of human proteins with 118200335
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|118200335 family with sequence similarity 127, member A
[Homo sapiens]
(113 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|118200335 family with sequence similarity 127, member A [Homo... 235 6e-63
gi|118200333 family with sequence similarity 127, member B isofo... 223 2e-59
gi|239757911 PREDICTED: similar to Family with sequence similari... 222 4e-59
gi|118200337 family with sequence similarity 127, member C [Homo... 222 6e-59
gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo sapi... 131 1e-31
gi|197245393 family with sequence similarity 127, member B isofo... 123 3e-29
gi|49355807 leucine zipper, down-regulated in cancer 1-like [Hom... 80 3e-16
gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens] 58 1e-09
gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens] 58 1e-09
gi|199562283 retrotransposon-like 1 [Homo sapiens] 55 1e-08
gi|126157477 hypothetical protein LOC79680 [Homo sapiens] 54 3e-08
gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens] 51 2e-07
gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens] 49 9e-07
gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens] 27 2.7
gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens] 26 6.0
gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo... 26 6.0
gi|38788380 dehydrogenase E1 and transketolase domain containing... 26 7.8
gi|193804850 dehydrogenase/reductase (SDR family) X-linked [Homo... 26 7.8
gi|19923442 transmembrane emp24 protein transport domain contain... 26 7.8
gi|122937187 glycosyltransferase 8 domain containing 4 [Homo sap... 26 7.8
>gi|118200335 family with sequence similarity 127, member A [Homo
sapiens]
Length = 113
Score = 235 bits (599), Expect = 6e-63
Identities = 113/113 (100%), Positives = 113/113 (100%)
Query: 1 MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60
MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS
Sbjct: 1 MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60
Query: 61 DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF
Sbjct: 61 DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
>gi|118200333 family with sequence similarity 127, member B isoform
1 [Homo sapiens]
Length = 113
Score = 223 bits (569), Expect = 2e-59
Identities = 106/113 (93%), Positives = 110/113 (97%)
Query: 1 MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60
MDGRVQL+KALLA P+RPA RRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFS+
Sbjct: 1 MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
Query: 61 DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
DALKVTFLITRLTGPALQWVIPYI+KESPLLNDYRGFLAEMKRVFGWEEDEDF
Sbjct: 61 DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
>gi|239757911 PREDICTED: similar to Family with sequence similarity
127, member B [Homo sapiens]
Length = 113
Score = 222 bits (566), Expect = 4e-59
Identities = 106/113 (93%), Positives = 110/113 (97%)
Query: 1 MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60
MDGRVQL+KALLA P+RPA RRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFS+
Sbjct: 1 MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTCSYMFVDENTFSN 60
Query: 61 DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
DALKVTFLITRLTGPALQWVIPYI+KESPLLNDYRGFLAEMKRVFGWEEDEDF
Sbjct: 61 DALKVTFLITRLTGPALQWVIPYIRKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
>gi|118200337 family with sequence similarity 127, member C [Homo
sapiens]
Length = 113
Score = 222 bits (565), Expect = 6e-59
Identities = 105/113 (92%), Positives = 110/113 (97%)
Query: 1 MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60
M+GRVQL+KALLA P+RPA RRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFS+
Sbjct: 1 MEGRVQLMKALLARPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
Query: 61 DALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDEDF 113
DALKVTFLITRLTGPALQWVIPYIKKESPLL+DYRGFLAEMKRVFGWEEDEDF
Sbjct: 61 DALKVTFLITRLTGPALQWVIPYIKKESPLLSDYRGFLAEMKRVFGWEEDEDF 113
>gi|6912480 leucine zipper, down-regulated in cancer 1 [Homo
sapiens]
Length = 146
Score = 131 bits (330), Expect = 1e-31
Identities = 61/104 (58%), Positives = 80/104 (76%), Gaps = 4/104 (3%)
Query: 9 KALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFL 68
+A L +RP + P+PFPETF+G++ RLPEFIVQT SYM V+EN F +DA+KV FL
Sbjct: 37 RASLLRQVRPPSC----PVPFPETFNGESSRLPEFIVQTASYMLVNENRFCNDAMKVAFL 92
Query: 69 ITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVFGWEEDED 112
I+ LTG A +WV+PYI+ +SP+L DYR FL EMK+ FGW++DED
Sbjct: 93 ISLLTGEAEEWVVPYIEMDSPILGDYRAFLDEMKQCFGWDDDED 136
>gi|197245393 family with sequence similarity 127, member B
isoform 2 [Homo sapiens]
Length = 83
Score = 123 bits (309), Expect = 3e-29
Identities = 58/64 (90%), Positives = 61/64 (95%)
Query: 1 MDGRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSS 60
MDGRVQL+KALLA P+RPA RRWRNPIPFPETFDGDTDRLPEFIVQT SYMFVDENTFS+
Sbjct: 1 MDGRVQLMKALLAGPLRPAARRWRNPIPFPETFDGDTDRLPEFIVQTSSYMFVDENTFSN 60
Query: 61 DALK 64
DALK
Sbjct: 61 DALK 64
>gi|49355807 leucine zipper, down-regulated in cancer 1-like [Homo
sapiens]
Length = 239
Score = 80.1 bits (196), Expect = 3e-16
Identities = 35/80 (43%), Positives = 53/80 (66%)
Query: 26 PIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIK 85
P PE F GD RL F++Q +M + F +A +V FL++RLTG A +W IP+++
Sbjct: 98 PTSLPEPFSGDPGRLAGFLMQMDRFMIFQASRFPGEAERVAFLVSRLTGEAEKWAIPHMQ 157
Query: 86 KESPLLNDYRGFLAEMKRVF 105
+SPL N+Y+GFLAE++R +
Sbjct: 158 PDSPLRNNYQGFLAELRRTY 177
>gi|94421473 paternally expressed 10 isoform RF1 [Homo sapiens]
Length = 325
Score = 58.2 bits (139), Expect = 1e-09
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 26 PIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIK 85
P PE FDG+ D L F+ Q +M FS D ++V F+ + +TG A +W ++
Sbjct: 79 PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138
Query: 86 KESPLLNDYRGFLAEMKRVF 105
+ L+++Y F+ EMK VF
Sbjct: 139 RSHYLMHNYPAFMMEMKHVF 158
>gi|94421475 paternally expressed 10 isoform RF1/2 [Homo sapiens]
Length = 708
Score = 58.2 bits (139), Expect = 1e-09
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 26 PIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIK 85
P PE FDG+ D L F+ Q +M FS D ++V F+ + +TG A +W ++
Sbjct: 79 PEDLPEKFDGNPDMLAPFMAQCQIFMEKSTRDFSVDRVRVCFVTSMMTGRAARWASAKLE 138
Query: 86 KESPLLNDYRGFLAEMKRVF 105
+ L+++Y F+ EMK VF
Sbjct: 139 RSHYLMHNYPAFMMEMKHVF 158
>gi|199562283 retrotransposon-like 1 [Homo sapiens]
Length = 1358
Score = 55.1 bits (131), Expect = 1e-08
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 27 IPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKK 86
+P P+ F GD EFIV + F +D L+V ++I L+G AL+W +++
Sbjct: 200 LPAPKHFSGDRREFHEFIVLCQLTLQSYPRMFYNDRLRVGYVINHLSGLALEWAKALLQE 259
Query: 87 ESPLLNDYRGFLAEMKRVFGWEE 109
SPL+ D+ FL M VF + +
Sbjct: 260 NSPLIGDFPAFLEAMSEVFEYRQ 282
>gi|126157477 hypothetical protein LOC79680 [Homo sapiens]
Length = 364
Score = 53.9 bits (128), Expect = 3e-08
Identities = 27/75 (36%), Positives = 38/75 (50%)
Query: 30 PETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIKKESP 89
P TFDG L F+ Q G YM + + +V ++ RLTG A W PY+ + P
Sbjct: 104 PGTFDGSPWLLDRFLAQLGDYMSFHFEHYQDNISRVCEILRRLTGRAQAWAAPYLDGDLP 163
Query: 90 LLNDYRGFLAEMKRV 104
L +DY F ++K V
Sbjct: 164 LPDDYELFCQDLKEV 178
>gi|22749387 zinc finger, CCHC domain containing 5 [Homo sapiens]
Length = 475
Score = 51.2 bits (121), Expect = 2e-07
Identities = 27/80 (33%), Positives = 44/80 (55%)
Query: 26 PIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTGPALQWVIPYIK 85
P+ + TF GD+ +LPEF+VQ SYM V + + ++A V+F+ +G A W +
Sbjct: 237 PLQYTLTFSGDSQKLPEFLVQLYSYMRVRGHLYPTEAALVSFVGNCFSGRAGWWFQLLLD 296
Query: 86 KESPLLNDYRGFLAEMKRVF 105
+SPLL F+ ++ F
Sbjct: 297 IQSPLLEQCESFIPVLQDTF 316
>gi|66792814 retrotransposon gag domain containing 4 [Homo sapiens]
Length = 569
Score = 48.9 bits (115), Expect = 9e-07
Identities = 31/91 (34%), Positives = 46/91 (50%), Gaps = 6/91 (6%)
Query: 15 PIRPATRRWRNPIPFPETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLTG 74
P+ P R P E F GD L EF++Q +++ E F A +V FLI+ TG
Sbjct: 144 PLAPLER------PEIEPFSGDPVYLAEFLMQLETFIADHEVHFPGGAERVAFLISFFTG 197
Query: 75 PALQWVIPYIKKESPLLNDYRGFLAEMKRVF 105
A W I ++ SPL ++ FL E+++ F
Sbjct: 198 EAKDWAISVTQEGSPLHANFPRFLDEIRKEF 228
>gi|24308215 retrotransposon gag domain containing 1 [Homo sapiens]
Length = 1388
Score = 27.3 bits (59), Expect = 2.7
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 58 FSSDALKVTFLITRLTGPALQWVIPYIKKESPLLNDYRGFLAEMKRVF 105
F D+ ++ FL++ G A +W I ++ PL ++ + FL + ++
Sbjct: 1179 FLDDSERMAFLVSLHLGAAERWFILQMEVGEPLSHENKSFLRRSQGIY 1226
>gi|157502199 CUB and Sushi multiple domains 1 [Homo sapiens]
Length = 3565
Score = 26.2 bits (56), Expect = 6.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)
Query: 31 ETFDGDTDRLPEFIVQTGSYMFVDENTFSSDALKVTFLITRLT---GPALQWVIPYIKKE 87
E FDG + + P +V +G++ T S+ L + + T G +++ PY
Sbjct: 2377 EVFDGSSGQSPLLVVLSGNHTEQSNFTSRSNQLYLRWSTDHATSKKGFKIRYAAPYCSLT 2436
Query: 88 SPLLN 92
PL N
Sbjct: 2437 HPLKN 2441
>gi|11321577 2'-5'-oligoadenylate synthetase-like isoform a [Homo
sapiens]
Length = 514
Score = 26.2 bits (56), Expect = 6.0
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 79 WVIPYIKKESPLLNDYRGFLAEMKRVFGW----EEDEDF 113
W Y+K SP N + E+ ++ W EEDE+F
Sbjct: 216 WYQQYVKARSPRANLPPLYALELLTIYAWEMGTEEDENF 254
>gi|38788380 dehydrogenase E1 and transketolase domain containing 1
[Homo sapiens]
Length = 919
Score = 25.8 bits (55), Expect = 7.8
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 3 GRVQLIKALLALPIRPATRRWRNPIPFPETFDGDTDRL 40
GR+ L+ LL P R+ R FPE F D L
Sbjct: 225 GRLNLLTGLLQFPPELMFRKMRGLSEFPENFSATGDVL 262
>gi|193804850 dehydrogenase/reductase (SDR family) X-linked [Homo
sapiens]
Length = 330
Score = 25.8 bits (55), Expect = 7.8
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 3/73 (4%)
Query: 37 TDRLPEFIVQTGSYM---FVDENTFSSDALKVTFLITRLTGPALQWVIPYIKKESPLLND 93
T L + GS++ VD ++D K F TRL L W++ E +
Sbjct: 219 TYHLQRLLAAEGSHVTANVVDPGVVNTDVYKHVFWATRLAKKLLGWLLFKTPDEGAWTSI 278
Query: 94 YRGFLAEMKRVFG 106
Y E++ V G
Sbjct: 279 YAAVTPELEGVGG 291
>gi|19923442 transmembrane emp24 protein transport domain containing
5 [Homo sapiens]
Length = 229
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 46 QTGSYMFVDENTFSSDALKVTF 67
+ G YMF +NTFS+ + KV F
Sbjct: 100 EVGDYMFCFDNTFSTISEKVIF 121
>gi|122937187 glycosyltransferase 8 domain containing 4 [Homo
sapiens]
Length = 443
Score = 25.8 bits (55), Expect = 7.8
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 13 ALPIRPATRRWRNPIPFPETFDG 35
ALP RPA+ R+P P P + G
Sbjct: 34 ALPARPASAPQRHPAPVPARWPG 56
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.142 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,651,727
Number of Sequences: 37866
Number of extensions: 188712
Number of successful extensions: 312
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 21
length of query: 113
length of database: 18,247,518
effective HSP length: 83
effective length of query: 30
effective length of database: 15,104,640
effective search space: 453139200
effective search space used: 453139200
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.