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Search of human proteins with 239751601
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo
sapiens]
(282 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo ... 593 e-170
gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo ... 593 e-170
gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens] 487 e-138
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens] 38 0.011
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens] 38 0.011
gi|60097902 filaggrin [Homo sapiens] 36 0.043
gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo ... 35 0.057
gi|169173184 PREDICTED: hypothetical protein [Homo sapiens] 35 0.074
gi|169214154 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|169213511 PREDICTED: hypothetical protein [Homo sapiens] 34 0.13
gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens] 34 0.16
gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens] 33 0.22
gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo ... 33 0.28
gi|239508743 PREDICTED: hypothetical protein [Homo sapiens] 33 0.28
gi|163965366 nascent polypeptide-associated complex alpha subuni... 33 0.37
gi|239751430 PREDICTED: hypothetical protein [Homo sapiens] 32 0.48
gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo ... 32 0.48
gi|239757152 PREDICTED: hypothetical protein [Homo sapiens] 32 0.63
gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo ... 32 0.63
gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens] 32 0.63
gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo s... 32 0.82
gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 32 0.82
gi|89059963 PREDICTED: FERM and PDZ domain containing 3 [Homo sa... 32 0.82
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 32 0.82
gi|239753721 PREDICTED: hypothetical protein [Homo sapiens] 31 1.1
gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo ... 31 1.1
gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo ... 31 1.1
gi|81174549 hypothetical protein LOC84792 [Homo sapiens] 31 1.1
gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo ... 31 1.4
gi|32171205 EF-hand domain family, member A2 [Homo sapiens] 31 1.4
>gi|239751601 PREDICTED: hypothetical protein XP_002347933 [Homo
sapiens]
Length = 282
Score = 593 bits (1530), Expect = e-170
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MALSERTFRKLGVFSMGTSGLLEICCDSHEGHTQARGIPGDLCGGECVRWEQQEAASPLP 60
MALSERTFRKLGVFSMGTSGLLEICCDSHEGHTQARGIPGDLCGGECVRWEQQEAASPLP
Sbjct: 1 MALSERTFRKLGVFSMGTSGLLEICCDSHEGHTQARGIPGDLCGGECVRWEQQEAASPLP 60
Query: 61 PCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLR 120
PCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLR
Sbjct: 61 PCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLR 120
Query: 121 SMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLR 180
SMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLR
Sbjct: 121 SMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLR 180
Query: 181 RPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGA 240
RPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGA
Sbjct: 181 RPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGA 240
Query: 241 FWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY 282
FWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY
Sbjct: 241 FWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY 282
>gi|239746116 PREDICTED: hypothetical protein XP_002344200 [Homo
sapiens]
Length = 282
Score = 593 bits (1530), Expect = e-170
Identities = 282/282 (100%), Positives = 282/282 (100%)
Query: 1 MALSERTFRKLGVFSMGTSGLLEICCDSHEGHTQARGIPGDLCGGECVRWEQQEAASPLP 60
MALSERTFRKLGVFSMGTSGLLEICCDSHEGHTQARGIPGDLCGGECVRWEQQEAASPLP
Sbjct: 1 MALSERTFRKLGVFSMGTSGLLEICCDSHEGHTQARGIPGDLCGGECVRWEQQEAASPLP 60
Query: 61 PCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLR 120
PCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLR
Sbjct: 61 PCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLR 120
Query: 121 SMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLR 180
SMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLR
Sbjct: 121 SMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLR 180
Query: 181 RPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGA 240
RPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGA
Sbjct: 181 RPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGA 240
Query: 241 FWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY 282
FWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY
Sbjct: 241 FWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY 282
>gi|239757095 PREDICTED: similar to hCG2005276 [Homo sapiens]
Length = 261
Score = 487 bits (1253), Expect = e-138
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 51 EQQEAASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAA 110
EQQEAASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAA
Sbjct: 30 EQQEAASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAA 89
Query: 111 PGQALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQG 170
PGQALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQG
Sbjct: 90 PGQALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQG 149
Query: 171 TGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRET 230
TGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRET
Sbjct: 150 TGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRET 209
Query: 231 EAGGPAGSGAFWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY 282
EAGGPAGSGAFWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY
Sbjct: 210 EAGGPAGSGAFWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVPRLCYIY 261
>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 37.7 bits (86), Expect = 0.011
Identities = 56/223 (25%), Positives = 79/223 (35%), Gaps = 48/223 (21%)
Query: 45 GECVRWEQQEAASPLPPCGSLEGRRWSGASSAP------AVRPHQGWSQSSHRGDSAHQS 98
G+ +W++ + P P L RRW + P + P G S R SAH
Sbjct: 122 GKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPP 181
Query: 99 PWGSDQILAGAAPGQALSM----------GLRSMQVGARWAQANEPTRRS-PHWAAGPGG 147
GS ++ G QA + S+ A+ A+A P R+ AAG G
Sbjct: 182 GRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRG 241
Query: 148 HQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLL 207
G + RG + + P AR L S A SL S L
Sbjct: 242 RGGAERPAARG------------------SAQQPPLARLLLASAVSLAA--SLARSPPPL 281
Query: 208 AP-LGASAPPQSWVPVS----------PLNRRETEAGGPAGSG 239
P LG+++PP+ P++ P R PAG G
Sbjct: 282 QPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHG 324
>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
Length = 520
Score = 37.7 bits (86), Expect = 0.011
Identities = 56/223 (25%), Positives = 79/223 (35%), Gaps = 48/223 (21%)
Query: 45 GECVRWEQQEAASPLPPCGSLEGRRWSGASSAP------AVRPHQGWSQSSHRGDSAHQS 98
G+ +W++ + P P L RRW + P + P G S R SAH
Sbjct: 122 GKTGQWKEGRGSHPTPEPQRLAARRWLHSPREPTPPGRLSAPPRHGPHPQSFRRPSAHPP 181
Query: 99 PWGSDQILAGAAPGQALSM----------GLRSMQVGARWAQANEPTRRS-PHWAAGPGG 147
GS ++ G QA + S+ A+ A+A P R+ AAG G
Sbjct: 182 GRGSGRVPRGQPEQQAWEQRSSHFLAPEGSVASLLPSAKPARAPRPAPRAREEAAAGSRG 241
Query: 148 HQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLL 207
G + RG + + P AR L S A SL S L
Sbjct: 242 RGGAERPAARG------------------SAQQPPLARLLLASAVSLAA--SLARSPPPL 281
Query: 208 AP-LGASAPPQSWVPVS----------PLNRRETEAGGPAGSG 239
P LG+++PP+ P++ P R PAG G
Sbjct: 282 QPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHG 324
>gi|60097902 filaggrin [Homo sapiens]
Length = 4061
Score = 35.8 bits (81), Expect = 0.043
Identities = 53/210 (25%), Positives = 80/210 (38%), Gaps = 27/210 (12%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
S + RWSG++S R H+G +Q R S H + D+ G + + G +
Sbjct: 3549 SEDSERWSGSAS----RNHRGSAQEQSRDGSRHPTSHHEDRAGHGHSAESSRQSGTHHAE 3604
Query: 124 --VGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTG-GLRSRSLR 180
G + A ++E R S G H +A+S+R G G G S ++R
Sbjct: 3605 NSSGGQAASSHEQARSSA--GERHGSHHQQSADSSR----------HSGIGHGQASSAVR 3652
Query: 181 RPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGA 240
R S S A S ++ G + P Q S R AG SG+
Sbjct: 3653 DSGHRGSSGSQASDSEGHSEDSDTQSVSAHGQAGPHQQSHQESTRGR---SAGRSGRSGS 3709
Query: 241 FWQRRATKSRLAAAGVWFSEAKAGVGTQGR 270
F + +T + +A +AG T GR
Sbjct: 3710 FLYQVSTHEQSESA-----HGRAGPSTGGR 3734
Score = 33.5 bits (75), Expect = 0.22
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
S + RWSG++S R H G +Q R S H D+ G + + G R Q
Sbjct: 2577 SEDSERWSGSAS----RNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQ 2632
Query: 124 V--GARWAQANEPTRRSPHWAAGPGGHQGLAAESTR 157
G + A ++E R S G H +A+S+R
Sbjct: 2633 TSSGGQAASSHEQARSSA--GERHGSHHQQSADSSR 2666
Score = 33.5 bits (75), Expect = 0.22
Identities = 28/96 (29%), Positives = 41/96 (42%), Gaps = 8/96 (8%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
S + RWSG++S R H G +Q R S H D+ G + + G R Q
Sbjct: 2901 SEDSERWSGSAS----RNHHGSAQEQLRDGSRHPRSHQEDRAGHGHSADSSRQSGTRHTQ 2956
Query: 124 V--GARWAQANEPTRRSPHWAAGPGGHQGLAAESTR 157
G + A ++E R S G H +A+S+R
Sbjct: 2957 TSSGGQAASSHEQARSSA--GERHGSHHQQSADSSR 2990
Score = 33.5 bits (75), Expect = 0.22
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 25/149 (16%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
S + RWSG++S R H+G Q R S H D+ G + ++ G R +
Sbjct: 3225 SEDSERWSGSAS----RNHRGSVQEQSRHGSRHPRSHHEDRAGHGHSADRSRQSGTRHAE 3280
Query: 124 V--GARWAQANEPTRRSP--------HWAAGPGGHQGL----AAESTRGRRLWLGTCPRQ 169
G + A ++E R SP +A H G+ A+ + R R W
Sbjct: 3281 TSSGGQAASSHEQARSSPGERHGSRHQQSADSSRHSGIPRGQASSAVRDSRHW------- 3333
Query: 170 GTGGLRSRSLRRPWARSSLESWAPRGASG 198
G+ G ++ S +S + G +G
Sbjct: 3334 GSSGSQASDSEGHSEESDTQSVSGHGQAG 3362
Score = 32.0 bits (71), Expect = 0.63
Identities = 38/138 (27%), Positives = 54/138 (39%), Gaps = 25/138 (18%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
S + RWSG++S R H G +Q R S H D+ G + + G R Q
Sbjct: 631 SEDSERWSGSAS----RNHHGSAQEQSRDGSRHPRSHHEDRAGHGHSADSSRKSGTRHTQ 686
Query: 124 --VGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLRR 181
+ A ++E R S G HQ +A+S+R GTG
Sbjct: 687 NSSSGQAASSHEQARSSAGERHG-SRHQLQSADSSR----------HSGTG--------H 727
Query: 182 PWARSSLESWAPRGASGS 199
A S++ RG+SGS
Sbjct: 728 GQASSAVRDSGHRGSSGS 745
Score = 30.8 bits (68), Expect = 1.4
Identities = 37/138 (26%), Positives = 54/138 (39%), Gaps = 26/138 (18%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
S + R SG++S R H G + R S H D+ G + + G R +
Sbjct: 307 SEDSERHSGSAS----RNHHGSAWEQSRDGSRHPRSHDEDRASHGHSADSSRQSGTRHAE 362
Query: 124 VGAR--WAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRSRSLRR 181
+R A ++E R SP G G Q +A+S+R TG R
Sbjct: 363 TSSRGQTASSHEQARSSPGERHGSGHQQ--SADSSR----------HSATG--------R 402
Query: 182 PWARSSLESWAPRGASGS 199
A S++ RG+SGS
Sbjct: 403 GQASSAVSDRGHRGSSGS 420
Score = 28.9 bits (63), Expect = 5.3
Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 7/96 (7%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
S + RWSG++S R H G + R S H D+ G + + G R +
Sbjct: 1928 SEDSERWSGSAS----RNHLGSAWEQSRDGSRHPGSHHEDRAGHGHSADSSRQSGTRHTE 1983
Query: 124 VGARW--AQANEPTRRSPHWAAGPGGHQGLAAESTR 157
+R A ++E R S G HQ +A+S+R
Sbjct: 1984 SSSRGQAASSHEQARSSAGERHG-SHHQLQSADSSR 2018
>gi|239757942 PREDICTED: hypothetical protein XP_002346387 [Homo
sapiens]
Length = 239
Score = 35.4 bits (80), Expect = 0.057
Identities = 44/160 (27%), Positives = 60/160 (37%), Gaps = 30/160 (18%)
Query: 117 MGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGLRS 176
+ LRS +V R A R+ W G GH + +TR RL G+
Sbjct: 47 LSLRSPEVVGRVASR----ARARTWEGGKEGHAAVPQPATRSGRL-----------GVWG 91
Query: 177 RSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPA 236
LR WA ++ RG G G S P + P S +R A G
Sbjct: 92 GPLRHSWAPRPRQASQTRGGGG------------GPSLPGPAGRP-SGRSRSRVGARGRL 138
Query: 237 GSGAFWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDVP 276
SG + +S LAAA W + A+ +G G P + P
Sbjct: 139 PSGGSHLPQPPRS-LAAASAWQAVARE-LGLSGPRPTEAP 176
>gi|169173184 PREDICTED: hypothetical protein [Homo sapiens]
Length = 1230
Score = 35.0 bits (79), Expect = 0.074
Identities = 45/186 (24%), Positives = 64/186 (34%), Gaps = 20/186 (10%)
Query: 70 WSGASSAPAVRPHQ-GWSQSSHRGDSAHQSPWGSDQILAGAAPGQA----LSMGLRSMQV 124
W+ S++ A P GW+ S G S + W S + P + S S
Sbjct: 100 WASPSASGASIPSDSGWASPSVSGASIPSAFWASPSASGASTPSDSGWASPSASWASTSS 159
Query: 125 GARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRR----LWLGTCPRQGTG----GLRS 176
+ WA + + SP + G + S G W+ + G S
Sbjct: 160 DSGWASPSA-SWTSPSASCASSSASGASTPSDSGWASPSVFWVSPSTSWASSPSDFGWAS 218
Query: 177 RSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPA 236
WA SS +P ASG+ T S G ++P SWV S + G A
Sbjct: 219 TPSDSGWASSSASCISP-SASGASTSSD-----SGWASPSASWVSTSTSRASTSSDSGWA 272
Query: 237 GSGAFW 242
S A W
Sbjct: 273 SSSASW 278
>gi|169214154 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.13
Identities = 55/185 (29%), Positives = 66/185 (35%), Gaps = 32/185 (17%)
Query: 106 LAGAAPGQALSMGLRSMQVGARWAQANEPTRRSPH------------WAAGPGGHQGLAA 153
L GA PG A S R Q R +P PH + P H L
Sbjct: 500 LRGARPGPAASAATRMWQGSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQPPSH-NLFV 558
Query: 154 ESTRGRRLWLGTCPRQGTGGLRSRSLRRPWA----RSSLESWAPRGASGSLTLSQWLLAP 209
E RG R L G + R+LRR R+ S AP ASGS+ S
Sbjct: 559 EELRGARAAL------ARGWMLPRALRRQLCPIDPRARPGSVAPAAASGSIESSS----- 607
Query: 210 LGASAPPQSWVPVSPLNRRETEAGGP--AGS--GAFWQRRATKSRLAAAGVWFSEAKAGV 265
L A + RR TEAG P AG GA R R+A A F ++
Sbjct: 608 LSGRAARLALGKHRACLRRGTEAGRPRLAGERRGAGDGRARDFRRIALAAPQFPHLESNT 667
Query: 266 GTQGR 270
+GR
Sbjct: 668 LGRGR 672
>gi|169213511 PREDICTED: hypothetical protein [Homo sapiens]
Length = 737
Score = 34.3 bits (77), Expect = 0.13
Identities = 55/185 (29%), Positives = 66/185 (35%), Gaps = 32/185 (17%)
Query: 106 LAGAAPGQALSMGLRSMQVGARWAQANEPTRRSPH------------WAAGPGGHQGLAA 153
L GA PG A S R Q R +P PH + P H L
Sbjct: 500 LRGARPGPAASAATRMWQGSGRRRPGPDPQELDPHCKLSFPRLPLTPTESQPPSH-NLFV 558
Query: 154 ESTRGRRLWLGTCPRQGTGGLRSRSLRRPWA----RSSLESWAPRGASGSLTLSQWLLAP 209
E RG R L G + R+LRR R+ S AP ASGS+ S
Sbjct: 559 EELRGARAAL------ARGWMLPRALRRQLCPIDPRARPGSVAPAAASGSIESSS----- 607
Query: 210 LGASAPPQSWVPVSPLNRRETEAGGP--AGS--GAFWQRRATKSRLAAAGVWFSEAKAGV 265
L A + RR TEAG P AG GA R R+A A F ++
Sbjct: 608 LSGRAARLALGKHRACLRRGTEAGRPRLAGERRGAGDGRARDFRRIALAAPQFPHLESNT 667
Query: 266 GTQGR 270
+GR
Sbjct: 668 LGRGR 672
>gi|24308382 leukocyte receptor cluster member 8 [Homo sapiens]
Length = 800
Score = 33.9 bits (76), Expect = 0.16
Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 6/126 (4%)
Query: 65 LEGRRWSGASSAPAVRPHQGW-SQSSHRGDSAHQSPWGSDQILAGAAPGQALSM--GLRS 121
+ G S P+ HQG +Q G S Q L A P Q + G +
Sbjct: 119 MAGSYGSATPQQPSAPQHQGTLNQPPVPGMDESMSYQAPPQQLPSAQPPQPSNPPHGAHT 178
Query: 122 MQVGAR--WAQANEPTRRSPHWAAGPGGHQGLA-AESTRGRRLWLGTCPRQGTGGLRSRS 178
+ G + A A + ++ P G H A+ +G++LW P GTGGL+
Sbjct: 179 LNSGPQPGTAPATQHSQAGPATGQAYGPHTYTEPAKPKKGQQLWNRMKPAPGTGGLKFNI 238
Query: 179 LRRPWA 184
+RP+A
Sbjct: 239 QKRPFA 244
>gi|31377595 zinc finger CCCH-type containing 18 [Homo sapiens]
Length = 953
Score = 33.5 bits (75), Expect = 0.22
Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 43/227 (18%)
Query: 57 SPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQ------SPWGSDQILAGAA 110
SP PP E + A++ P V+ W R S + SP + + +A
Sbjct: 487 SPQPPSRQAEPPKKEAATTGPQVKRADEWKDPWRRSKSPKKKLGVSVSPSRARRRRKTSA 546
Query: 111 PGQALSMGLRSMQVGARWAQANEPTRRS-----PHWAAGPGGHQGLAAESTRGRRLWLGT 165
+ S RS + ++ + RS +++ H + +R R
Sbjct: 547 SSASASNSSRSSSRSSSYSGSGSSRSRSRSSSYSSYSSRSSRHSSFSGSRSRSRSFSSSP 606
Query: 166 CPRQGTGGLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPL 225
P + S RP R+ E P G +G ++ + P APPQ+ +P+
Sbjct: 607 SPSP------TPSPHRPSIRTKGEPAPPPGKAGEKSVKK----PAPPPAPPQATKTTAPV 656
Query: 226 ----------------------NRRETEAGGPAGSGAFWQRRATKSR 250
RR T +G +GSG+ + +++SR
Sbjct: 657 PEPTKPGDPREARRKERPARTPPRRRTLSGSGSGSGSSYSGSSSRSR 703
>gi|239749065 PREDICTED: hypothetical protein XP_002346903 [Homo
sapiens]
Length = 128
Score = 33.1 bits (74), Expect = 0.28
Identities = 36/119 (30%), Positives = 39/119 (32%), Gaps = 28/119 (23%)
Query: 60 PPCGSLEGRRWSGASSAPA---------VRP-----HQGWSQSSHRGDSAHQSPWGSDQI 105
PP G RR G SS P RP GW + RG A P GS
Sbjct: 9 PPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPVGSHS- 67
Query: 106 LAGAAPGQALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLG 164
AP + G A + P SPH PGG G A S R L G
Sbjct: 68 ---GAPRVCRAEG----------AASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAG 113
>gi|239508743 PREDICTED: hypothetical protein [Homo sapiens]
Length = 128
Score = 33.1 bits (74), Expect = 0.28
Identities = 36/119 (30%), Positives = 39/119 (32%), Gaps = 28/119 (23%)
Query: 60 PPCGSLEGRRWSGASSAPA---------VRP-----HQGWSQSSHRGDSAHQSPWGSDQI 105
PP G RR G SS P RP GW + RG A P GS
Sbjct: 9 PPPGDTASRRLGGVSSRPGRIRRRGLGRERPPPTVTEVGWGREVRRGFEACARPVGSHS- 67
Query: 106 LAGAAPGQALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLG 164
AP + G A + P SPH PGG G A S R L G
Sbjct: 68 ---GAPRVCRAEG----------AASPGPPSSSPHLTRRPGGPWGSAPRSASLRALSAG 113
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 32.7 bits (73), Expect = 0.37
Identities = 43/184 (23%), Positives = 59/184 (32%), Gaps = 36/184 (19%)
Query: 55 AASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQA 114
AA+P P G L GA + PA P S +G A P G+ A P
Sbjct: 1107 AATPPSPKGGLATPPHKGAPTTPAATP------PSPKGGLATPPPKGAPTTPAATPP--- 1157
Query: 115 LSMGLRSMQVGARWAQANEPTRRSPHWAAG--PGGHQGLAAESTRGRRLWLGTCPRQGTG 172
+ A P + +P A P GLA S +G P G
Sbjct: 1158 ----------SPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKG 1207
Query: 173 GLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEA 232
GL + S + + +P+G G + P P +P +
Sbjct: 1208 GLATPSPKGAPTTPAATPPSPKG---------------GLATPSPKGAPTTPAATPPSPK 1252
Query: 233 GGPA 236
GGPA
Sbjct: 1253 GGPA 1256
>gi|239751430 PREDICTED: hypothetical protein [Homo sapiens]
Length = 303
Score = 32.3 bits (72), Expect = 0.48
Identities = 55/209 (26%), Positives = 71/209 (33%), Gaps = 46/209 (22%)
Query: 52 QQEAASPLPPCGSLEGRRWSGASSAPAVRPH-QGWSQSSHRGDSAHQSPWGSDQILAGAA 110
Q AA+P PP S A P RP G + + G W + + AG
Sbjct: 102 QVAAAAPAPPA--------SWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAG-- 151
Query: 111 PGQALSMGLRSMQVGARWAQANEPTRRSPHWAAGPG-GHQGLAAESTRGRRLWLGTCPRQ 169
PG++ + A WA P AAGP GH AA+ R G +
Sbjct: 152 PGRSAPQ----REPRAAWAACPA----GPSSAAGPERGHVSCAADEPGTERS--GAAAAR 201
Query: 170 GTGGL--RSRSLRRPWARSSL------ESWAPR--GASGSLTLS--------------QW 205
G+ G R R WAR S W + GA G+ Q
Sbjct: 202 GSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQS 261
Query: 206 LLAPLGASAPPQSWVPVSPLNRRETEAGG 234
L PL + +P SPL+R E G
Sbjct: 262 LRGPLAGAQSRPDLLPASPLSRLGEEGKG 290
>gi|239745934 PREDICTED: hypothetical protein XP_002343619 [Homo
sapiens]
Length = 303
Score = 32.3 bits (72), Expect = 0.48
Identities = 55/209 (26%), Positives = 71/209 (33%), Gaps = 46/209 (22%)
Query: 52 QQEAASPLPPCGSLEGRRWSGASSAPAVRPH-QGWSQSSHRGDSAHQSPWGSDQILAGAA 110
Q AA+P PP S A P RP G + + G W + + AG
Sbjct: 102 QVAAAAPAPPA--------SWAPPQPGRRPTCPGCCRGAASGAPRWVRTWAAAAVAAG-- 151
Query: 111 PGQALSMGLRSMQVGARWAQANEPTRRSPHWAAGPG-GHQGLAAESTRGRRLWLGTCPRQ 169
PG++ + A WA P AAGP GH AA+ R G +
Sbjct: 152 PGRSAPQ----REPRAAWAACPA----GPSSAAGPERGHVSCAADEPGTERS--GAAAAR 201
Query: 170 GTGGL--RSRSLRRPWARSSL------ESWAPR--GASGSLTLS--------------QW 205
G+ G R R WAR S W + GA G+ Q
Sbjct: 202 GSAGASSRGRGALGAWARHSAVRLDSGRGWRGKTPGAGGAAERGAQLAKCPASKAFGDQS 261
Query: 206 LLAPLGASAPPQSWVPVSPLNRRETEAGG 234
L PL + +P SPL+R E G
Sbjct: 262 LRGPLAGAQSRPDLLPASPLSRLGEEGKG 290
>gi|239757152 PREDICTED: hypothetical protein [Homo sapiens]
Length = 235
Score = 32.0 bits (71), Expect = 0.63
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 42 LCGGECVRWEQQ--EAASPLPPCGSLEGRRWSGASSAPAVRPHQ------GWSQSSHRGD 93
+C VRW + E A P PPCG L G G S A RP GW+ S G
Sbjct: 131 VCWPGVVRWGRGCLELAGPGPPCGRLRG---LGPSPPRAARPSVPAAAGCGWAGSRDSGR 187
Query: 94 SAHQSP----WGSDQILAGAAP 111
P G + +L +AP
Sbjct: 188 PVPSLPVDCGLGPEALLCSSAP 209
>gi|239751653 PREDICTED: hypothetical protein XP_002347960 [Homo
sapiens]
Length = 235
Score = 32.0 bits (71), Expect = 0.63
Identities = 27/82 (32%), Positives = 33/82 (40%), Gaps = 15/82 (18%)
Query: 42 LCGGECVRWEQQ--EAASPLPPCGSLEGRRWSGASSAPAVRPHQ------GWSQSSHRGD 93
+C VRW + E A P PPCG L G G S A RP GW+ S G
Sbjct: 131 VCWPGVVRWGRGCLELAGPGPPCGRLRG---LGPSPPRAARPSVPAAAGCGWAGSRDSGR 187
Query: 94 SAHQSP----WGSDQILAGAAP 111
P G + +L +AP
Sbjct: 188 PVPSLPVDCGLGPEALLCSSAP 209
>gi|239747812 PREDICTED: ankyrin repeat domain 36 [Homo sapiens]
Length = 753
Score = 32.0 bits (71), Expect = 0.63
Identities = 19/56 (33%), Positives = 22/56 (39%), Gaps = 10/56 (17%)
Query: 141 WAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGGL--------RSRSLRRPWARSSL 188
W GP G G ST W P +GT + R R L RPW R+ L
Sbjct: 215 WGCGPSG--GTRRRSTTQPHPWAAEGPARGTPSVGSLWKRRARGRQLNRPWGRARL 268
>gi|239757877 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1662
Score = 31.6 bits (70), Expect = 0.82
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
+L+ S +P+ +PH S RG S P G + + AA Q +M R ++
Sbjct: 1017 ALQSPSCQSRSHSPSCQPHGHSPSSQSRGQSPSCQPRGQSPLRSQAASRQVSTMPSRKLE 1076
Query: 124 VGARWAQANEPTRRSPHWAAGP 145
A + P + GP
Sbjct: 1077 TTLNGAHSTSEGPAKPKSSRGP 1098
>gi|89060961 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 31.6 bits (70), Expect = 0.82
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
+L+ S +P+ +PH S RG S P G + + AA Q +M R ++
Sbjct: 1165 ALQSPSCQSRSHSPSCQPHGHSPSSQSRGQSPSCQPRGQSPLRSQAASRQVSTMPSRKLE 1224
Query: 124 VGARWAQANEPTRRSPHWAAGP 145
A + P + GP
Sbjct: 1225 TTLNGAHSTSEGPAKPKSSRGP 1246
>gi|89059963 PREDICTED: FERM and PDZ domain containing 3 [Homo
sapiens]
Length = 1810
Score = 31.6 bits (70), Expect = 0.82
Identities = 20/82 (24%), Positives = 32/82 (39%)
Query: 64 SLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAAPGQALSMGLRSMQ 123
+L+ S +P+ +PH S RG S P G + + AA Q +M R ++
Sbjct: 1165 ALQSPSCQSRSHSPSCQPHGHSPSSQSRGQSPSCQPRGQSPLRSQAASRQVSTMPSRKLE 1224
Query: 124 VGARWAQANEPTRRSPHWAAGP 145
A + P + GP
Sbjct: 1225 TTLNGAHSTSEGPAKPKSSRGP 1246
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 31.6 bits (70), Expect = 0.82
Identities = 56/217 (25%), Positives = 79/217 (36%), Gaps = 27/217 (12%)
Query: 51 EQQEAASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSHRGDSAHQSPWGSDQILAGAA 110
E++ P G+ R + S+APA P S HR +A + P S + A +
Sbjct: 461 EREAETEPERGAGTEPERIGTEPSTAPAPSPPAPKSCLKHRPAAASEGPAASPPLAAAES 520
Query: 111 PGQALSMGLRSMQVGA----RWAQANEP----TRRSPHWAAGPGGHQGLAAESTRGRRLW 162
P G + A + +A P R +P A GG AE ++
Sbjct: 521 PPVEPGPGSLDAEAAAPERPKAERAEAPPAGAERAAPERKAERGG-----AELRGAKKFS 575
Query: 163 LGTC---PRQGTG-GLRSRSLRRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQS 218
+ +C PR G L S R P ARS W A L Q L P A P+
Sbjct: 576 VSSCRARPRPGVSRPLERASGRLPLARSG-PVWRSEAALDDL---QGLPEPQHAKPGPRK 631
Query: 219 WVPVSPLNRRETEAGGPAGSGAFWQRRATKSRLAAAG 255
P + + A PAG R++ + AA G
Sbjct: 632 LAERGPQDSGD-RAASPAG-----PRKSPQEAAAAPG 662
>gi|239753721 PREDICTED: hypothetical protein [Homo sapiens]
Length = 342
Score = 31.2 bits (69), Expect = 1.1
Identities = 62/228 (27%), Positives = 78/228 (34%), Gaps = 29/228 (12%)
Query: 55 AASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSH-RGDSAHQSPWGSDQILAGAAPGQ 113
A PL G+ G R S R ++H R + + GS G A G
Sbjct: 82 APGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREGDAAGW 141
Query: 114 ALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGG 173
L+ GL G R + P SP AA PG + + T RR+ L P G
Sbjct: 142 LLAPGLGPRLRGGRGGWSPAPKAGSP-MAAAPG--RTCEGKRTAPRRMLLPDSPYAGRPQ 198
Query: 174 LRSRSL------RRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNR 227
SL RRP A + APRG L + A + S L
Sbjct: 199 RARTSLCAAPASRRPPAPTVA---APRGLETRPALPRRAGAAVHGS---------EGLAL 246
Query: 228 RETEAGGPAGSGAFWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDV 275
R AGSGA R +S W A AG+G L + V
Sbjct: 247 RAKRRDANAGSGARRCRELPES-------WILRAAAGLGPMFLLSERV 287
>gi|239748254 PREDICTED: hypothetical protein XP_002346600 [Homo
sapiens]
Length = 342
Score = 31.2 bits (69), Expect = 1.1
Identities = 62/228 (27%), Positives = 78/228 (34%), Gaps = 29/228 (12%)
Query: 55 AASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSH-RGDSAHQSPWGSDQILAGAAPGQ 113
A PL G+ G R S R ++H R + + GS G A G
Sbjct: 82 APGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREGDAAGW 141
Query: 114 ALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGG 173
L+ GL G R + P SP AA PG + + T RR+ L P G
Sbjct: 142 LLAPGLGPRLRGGRGGWSPAPKAGSP-MAAAPG--RTCEGKRTAPRRMLLPDSPYAGRPQ 198
Query: 174 LRSRSL------RRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNR 227
SL RRP A + APRG L + A + S L
Sbjct: 199 RARTSLCAAPASRRPPAPTVA---APRGLETRPALPRRAGAAVHGS---------EGLAL 246
Query: 228 RETEAGGPAGSGAFWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDV 275
R AGSGA R +S W A AG+G L + V
Sbjct: 247 RAKRRDANAGSGARRCRELPES-------WILRAAAGLGPMFLLSERV 287
>gi|239742155 PREDICTED: hypothetical protein XP_002342442 [Homo
sapiens]
Length = 342
Score = 31.2 bits (69), Expect = 1.1
Identities = 62/228 (27%), Positives = 78/228 (34%), Gaps = 29/228 (12%)
Query: 55 AASPLPPCGSLEGRRWSGASSAPAVRPHQGWSQSSH-RGDSAHQSPWGSDQILAGAAPGQ 113
A PL G+ G R S R ++H R + + GS G A G
Sbjct: 82 APGPLREQGTRRGCRRSLEQPRERARGQSSLRAAAHHRHNPGRRRGGGSPAAREGDAAGW 141
Query: 114 ALSMGLRSMQVGARWAQANEPTRRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTGG 173
L+ GL G R + P SP AA PG + + T RR+ L P G
Sbjct: 142 LLAPGLGPRLRGGRGGWSPAPKAGSP-MAAAPG--RTCEGKRTAPRRMLLPDSPYAGRPQ 198
Query: 174 LRSRSL------RRPWARSSLESWAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNR 227
SL RRP A + APRG L + A + S L
Sbjct: 199 RARTSLCAAPASRRPPAPTVA---APRGLETRPALPRRAGAAVHGS---------EGLAL 246
Query: 228 RETEAGGPAGSGAFWQRRATKSRLAAAGVWFSEAKAGVGTQGRLPDDV 275
R AGSGA R +S W A AG+G L + V
Sbjct: 247 RAKRRDANAGSGARRCRELPES-------WILRAAAGLGPMFLLSERV 287
>gi|81174549 hypothetical protein LOC84792 [Homo sapiens]
Length = 259
Score = 31.2 bits (69), Expect = 1.1
Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 22/95 (23%)
Query: 100 WGSDQILAGAAPGQALSMGLRSMQVGAR-WAQANEPT--------RRSPHWAAGPGGHQG 150
W + ++ G + +ALS+ +R GA W + P RR+P AA P G
Sbjct: 46 WMNKPVVDGNSQSEALSLEMRKDPSGAGLWLHSGGPVLPYVRESVRRNPASAATPSTAVG 105
Query: 151 LAAESTR-------------GRRLWLGTCPRQGTG 172
L T GRR WLG PR G
Sbjct: 106 LFPAPTECFARVSCSGVEALGRRDWLGGGPRATDG 140
>gi|239744733 PREDICTED: hypothetical protein XP_002343257 [Homo
sapiens]
Length = 659
Score = 30.8 bits (68), Expect = 1.4
Identities = 44/175 (25%), Positives = 65/175 (37%), Gaps = 34/175 (19%)
Query: 32 HTQARGIPGDLCGGECVRW----EQQEAASPLPPCGSLEGRRW-SGASSAPAVRPHQGWS 86
++++RG P C W + + + P C + GRR SG AV W+
Sbjct: 25 NSESRGAP--YLRSRCTGWTPTSQTRPSGRPADACAADSGRRRASGRLGRSAVSSGVLWT 82
Query: 87 QSSHRGDSAHQSPWGSDQILAGAAPGQALSMGL-RSMQVGARWA----------QANEPT 135
S G + P G ++ A G+ + R ++ A W+ +A+ P
Sbjct: 83 DSPEAGPGRIR-PGGVERGFGEPAKGEGFRGPVGRLIKTWASWSPARPRPDGSIKASLPA 141
Query: 136 RRSPHWAAGPGGHQGLAAESTRGRRLWLGTCPRQGTG--GLRSRSLRRPWARSSL 188
R SP P G G LW CPR G G G SL W+ S +
Sbjct: 142 RLSPR----PLGS---------GASLWPFVCPRFGAGREGASPVSLLERWSCSRM 183
>gi|32171205 EF-hand domain family, member A2 [Homo sapiens]
Length = 530
Score = 30.8 bits (68), Expect = 1.4
Identities = 27/79 (34%), Positives = 32/79 (40%), Gaps = 8/79 (10%)
Query: 191 WAPRGASGSLTLSQWLLAPLGASAPPQSWVPVSPLNRRETEAGGPAGSGAFWQRRATKSR 250
W P S L Q LL P G A +P P + RE E A + A W+RR
Sbjct: 9 WPPPRVSPPLCAHQPLLGPWGRPAVTTLGLPGRPFSSREDEE--RAVAEAAWRRRRRWGE 66
Query: 251 LAAAGVWFSEAKAGVGTQG 269
L+ A A AG G G
Sbjct: 67 LSVA------AAAGGGLVG 79
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.316 0.131 0.434
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,337,669
Number of Sequences: 37866
Number of extensions: 713987
Number of successful extensions: 2724
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 2655
Number of HSP's gapped (non-prelim): 155
length of query: 282
length of database: 18,247,518
effective HSP length: 101
effective length of query: 181
effective length of database: 14,423,052
effective search space: 2610572412
effective search space used: 2610572412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.