Guide to the Human Genome
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Name: ABAT Sequence: fasta or formatted (500aa) NCBI GI: 188536080
Description:

4-aminobutyrate aminotransferase precursor

Referenced in:

GABA and Glycine

Other entries for this name:
alt mRNA [500aa] 4-aminobutyrate aminotransferase precursor
alt mRNA [500aa] 4-aminobutyrate aminotransferase precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2         36           3
 C cysteine            2.4         12           1
 D aspartate           5.6         28           2
 E glutamate           5.8         29           2
 F phenylalanine       6.0         30           2
 G glycine             7.0         35           3
 H histidine           3.2         16           2
 I isoleucine          6.2         31           2
 K lysine              6.0         30           4
 L leucine             9.8         49           3
 M methionine          3.0         15           2
 N asparagine          4.4         22           2
 P proline             5.2         26           2
 Q glutamine           4.2         21           2
 R arginine            6.0         30           1
 S serine              6.4         32           2
 T threonine           3.4         17           2
 V valine              4.8         24           2
 W tryptophan          1.0          5           1
 Y tyrosine            2.4         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   4-aminobutyrate aminotransferase precursor 
ABAT                  1.000   4-aminobutyrate aminotransferase precursor 
ABAT                  1.000   4-aminobutyrate aminotransferase precursor 
AGXT2L1               0.068   alanine-glyoxylate aminotransferase 2-like 1 isoform...
AGXT2L1               0.062   alanine-glyoxylate aminotransferase 2-like 1 isofor...
AGXT2L1               0.061   alanine-glyoxylate aminotransferase 2-like 1 isofor...
AGXT2                 0.056   alanine-glyoxylate aminotransferase 2 precursor [Hom...
AGXT2L2               0.055   alanine-glyoxylate aminotransferase 2-like 2 
OAT                   0.044   ornithine aminotransferase precursor 
PIP4K2B               0.008   phosphatidylinositol-5-phosphate 4-kinase, type II, b...
C17orf66              0.005   hypothetical protein LOC256957 
UBE2Q2                0.005   ubiquitin-conjugating enzyme E2Q 2 isoform 2 
UBE2Q2                0.005   ubiquitin-conjugating enzyme E2Q 2 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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