Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 239751436
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|239751436 PREDICTED: hypothetical protein [Homo sapiens]
(121 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|239751436 PREDICTED: hypothetical protein [Homo sapiens] 247 1e-66
gi|239745941 PREDICTED: hypothetical protein [Homo sapiens] 244 1e-65
gi|239756949 PREDICTED: hypothetical protein [Homo sapiens] 243 2e-65
gi|19924099 synapsin I isoform Ia [Homo sapiens] 39 7e-04
gi|19924097 synapsin I isoform Ib [Homo sapiens] 39 7e-04
gi|238908524 hypothetical protein LOC389333 [Homo sapiens] 38 0.002
gi|169163728 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|169163708 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|169163019 PREDICTED: hypothetical protein [Homo sapiens] 38 0.002
gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens] 35 0.013
gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens] 35 0.013
gi|194578898 hypothetical protein LOC100170841 [Homo sapiens] 35 0.013
gi|163965366 nascent polypeptide-associated complex alpha subuni... 34 0.023
gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1 pre... 34 0.030
gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3 pre... 34 0.030
gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2 pre... 34 0.030
gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens] 33 0.039
gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Ho... 33 0.039
gi|33286446 opioid growth factor receptor [Homo sapiens] 33 0.051
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 33 0.051
gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.067
gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.067
gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens] 33 0.067
gi|27886561 nuclear factor of activated T-cells, cytoplasmic, ca... 32 0.087
gi|27886559 nuclear factor of activated T-cells, cytoplasmic, ca... 32 0.087
gi|27886555 nuclear factor of activated T-cells, cytoplasmic, ca... 32 0.087
gi|4758804 nuclear factor of activated T-cells, cytoplasmic, cal... 32 0.087
gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens] 32 0.087
gi|239754940 PREDICTED: hypothetical protein [Homo sapiens] 32 0.11
gi|160707881 formin 2 [Homo sapiens] 32 0.11
>gi|239751436 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 247 bits (631), Expect = 1e-66
Identities = 121/121 (100%), Positives = 121/121 (100%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV
Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
Query: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239745941 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 244 bits (623), Expect = 1e-65
Identities = 120/121 (99%), Positives = 120/121 (99%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQT TSV
Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTRTSV 60
Query: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|239756949 PREDICTED: hypothetical protein [Homo sapiens]
Length = 121
Score = 243 bits (620), Expect = 2e-65
Identities = 119/121 (98%), Positives = 119/121 (98%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV
Sbjct: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
Query: 61 SLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
LTGGPVLAGKLLAKRPRSPPSPNGERGSA SRSPTAAPQQRPRSPVGGRQELTEAAPLP
Sbjct: 61 RLTGGPVLAGKLLAKRPRSPPSPNGERGSAASRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
Query: 121 K 121
K
Sbjct: 121 K 121
>gi|19924099 synapsin I isoform Ia [Homo sapiens]
Length = 705
Score = 39.3 bits (90), Expect = 7e-04
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAA----- 98
P Q A P GQ S + GGP G A RP + PSP + G ++ T+
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574
Query: 99 ---------------PQQRPRSPVGGRQELTEAAPLPK 121
P Q+P P G ++ ++A P+P+
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612
Score = 30.0 bits (66), Expect = 0.43
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRP 103
PP+Q+ P GQ H L+G AG L +R SP S + A +P Q R
Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTS--APQQPASQAAPPTQGQGRQ 532
Query: 104 RSPVGGRQELTEAAPLP 120
PV G AA P
Sbjct: 533 SRPVAGGPGAPPAARPP 549
>gi|19924097 synapsin I isoform Ib [Homo sapiens]
Length = 669
Score = 39.3 bits (90), Expect = 7e-04
Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 23/98 (23%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAA----- 98
P Q A P GQ S + GGP G A RP + PSP + G ++ T+
Sbjct: 518 PASQAAPPTQGQGRQSRPVAGGP---GAPPAARPPASPSPQRQAGPPQATRQTSVSGPAP 574
Query: 99 ---------------PQQRPRSPVGGRQELTEAAPLPK 121
P Q+P P G ++ ++A P+P+
Sbjct: 575 PKASGAPPGGQQRQGPPQKPPGPAGPTRQASQAGPVPR 612
Score = 30.0 bits (66), Expect = 0.43
Identities = 26/77 (33%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRP 103
PP+Q+ P GQ H L+G AG L +R SP S + A +P Q R
Sbjct: 479 PPLQQRPPPQGQQH----LSGLGPPAGSPLPQRLPSPTS--APQQPASQAAPPTQGQGRQ 532
Query: 104 RSPVGGRQELTEAAPLP 120
PV G AA P
Sbjct: 533 SRPVAGGPGAPPAARPP 549
>gi|238908524 hypothetical protein LOC389333 [Homo sapiens]
Length = 1015
Score = 37.7 bits (86), Expect = 0.002
Identities = 37/120 (30%), Positives = 52/120 (43%), Gaps = 9/120 (7%)
Query: 4 VPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHL-PPIQKARPHPGQTHTSVSL 62
VPD + SP G ++S ++ V G G+ S P +A P PG +
Sbjct: 769 VPDGDGRTSPLGGARSSS-----QRSPV--GPAGVRSPRPGSPQMQASPSPGIAPKPKTP 821
Query: 63 TGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQR-PRSPVGGRQELTEAAPLPK 121
P A + A PR P + G A+ R+ +A P R P+SP G + AAPL K
Sbjct: 822 PTAPEPAAAVQAPLPREPLALAGRTAPAQPRAASAPPTDRSPQSPSQGARRQPGAAPLGK 881
>gi|169163728 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.7 bits (86), Expect = 0.002
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVL 68
R PSP + + RR+G L G + P AR P + + ++ P
Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAV---PAR 83
Query: 69 AGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
A + KRP + E S E RS P++ RPR G R+ L EAAPL
Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140
>gi|169163708 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.7 bits (86), Expect = 0.002
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVL 68
R PSP + + RR+G L G + P AR P + + ++ P
Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAV---PAR 83
Query: 69 AGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
A + KRP + E S E RS P++ RPR G R+ L EAAPL
Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140
>gi|169163019 PREDICTED: hypothetical protein [Homo sapiens]
Length = 237
Score = 37.7 bits (86), Expect = 0.002
Identities = 35/117 (29%), Positives = 48/117 (41%), Gaps = 17/117 (14%)
Query: 9 RKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVL 68
R PSP + + RR+G L G + P AR P + + ++ P
Sbjct: 35 RPPSP--------VGRARRRGTWLRVLRGPRAPSPAPALPARARPPRENRKRAV---PAR 83
Query: 69 AGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQ------RPRSPVGGRQELTEAAPL 119
A + KRP + E S E RS P++ RPR G R+ L EAAPL
Sbjct: 84 AARGPPKRPAGGQTGGVEAASGEERSQPRRPRRPPPAPRRPRPAPGRRKSLYEAAPL 140
>gi|219804203 rabphilin 3A homolog isoform 1 [Homo sapiens]
Length = 694
Score = 35.0 bits (79), Expect = 0.013
Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 16 GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLAGKLLAK 75
G + S + LRR V S P A P PGQ T GP AG+ +
Sbjct: 258 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 313
Query: 76 RPRSPPS-------PNGER-GSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
+P PS P ER G A + R P G + + AAP P
Sbjct: 314 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 366
>gi|45267837 rabphilin 3A homolog isoform 2 [Homo sapiens]
Length = 690
Score = 35.0 bits (79), Expect = 0.013
Identities = 33/113 (29%), Positives = 41/113 (36%), Gaps = 12/113 (10%)
Query: 16 GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLAGKLLAK 75
G + S + LRR V S P A P PGQ T GP AG+ +
Sbjct: 254 GDSSRSPAGLRRANSVQASRPAPGSVQSP----APPQPGQPGTPGGSRPGPGPAGRFPDQ 309
Query: 76 RPRSPPS-------PNGER-GSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
+P PS P ER G A + R P G + + AAP P
Sbjct: 310 KPEVAPSDPGTTAPPREERTGGVGGYPAVGAREDRMSHPSGPYSQASAAAPQP 362
>gi|194578898 hypothetical protein LOC100170841 [Homo sapiens]
Length = 379
Score = 35.0 bits (79), Expect = 0.013
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 18/103 (17%)
Query: 11 PSPHIGQETTSISKLRRKGEVAGG----LTGLNSCHLPPIQKARPHPGQTHTSVSLTGGP 66
P+ G++ + RR E GG G+ SC P A PHP ++ TS +
Sbjct: 100 PNTAAGEDADVAACPRRGEEEEGGGGFPHFGVRSCAPPGRCPAPPHPRESTTSFA----- 154
Query: 67 VLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGG 109
+ PR P +RG A S P P RP SP G
Sbjct: 155 -------SAPPRPAPGLEPQRGPAAS--PPQEPSSRPPSPPAG 188
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 34.3 bits (77), Expect = 0.023
Identities = 30/123 (24%), Positives = 44/123 (35%), Gaps = 8/123 (6%)
Query: 1 MLSVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSV 60
++++P + P+ ++ ++S + A P K P P T
Sbjct: 890 VVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAA-TPP 948
Query: 61 SLTGGPVLAGKLLAKRP--RSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAP 118
S GGP A P +PPSP G + + P P SP GG A P
Sbjct: 949 SPKGGPATPSPKWAPTPPAATPPSPKGGPATPSPKGAPTPPAATPPSPKGG-----PATP 1003
Query: 119 LPK 121
PK
Sbjct: 1004 SPK 1006
Score = 32.3 bits (72), Expect = 0.087
Identities = 35/121 (28%), Positives = 40/121 (33%), Gaps = 9/121 (7%)
Query: 3 SVPDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSL 62
S P + PSP T + K A L P K P P T S
Sbjct: 1033 STPPAATPPSPKGSPAATPLPK-GAPTTPAATLPSPKGGPATPSLKGAPTPPAA-TPPSP 1090
Query: 63 TGGPVLAGKLLAKRP--RSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLP 120
GGP A P +PPSP G + + P P SP GG A P P
Sbjct: 1091 KGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGL-----ATPPP 1145
Query: 121 K 121
K
Sbjct: 1146 K 1146
Score = 32.3 bits (72), Expect = 0.087
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 45 PIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRP--RSPPSPNGERGSAESRSPTAAPQQR 102
P K P+P T S GGP + A P +PPSP G G+ + P
Sbjct: 1281 PPHKGAPNPAVV-TPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGTPPPKGAPTPPAVT 1339
Query: 103 PRSPVG 108
P SP G
Sbjct: 1340 PPSPKG 1345
Score = 29.3 bits (64), Expect = 0.74
Identities = 25/79 (31%), Positives = 28/79 (35%), Gaps = 7/79 (8%)
Query: 45 PIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRP--RSPPSPNGERGSAESRSPTAAPQQR 102
P K P P T S GGP A P +PPSP G + + P
Sbjct: 957 PSPKWAPTPPAA-TPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVT 1015
Query: 103 PRSPVGGRQELTEAAPLPK 121
P SP G A P PK
Sbjct: 1016 PPSPKGS----PAATPFPK 1030
Score = 28.9 bits (63), Expect = 0.97
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 44 PPIQK---ARPHPGQTHTSVSLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAES 92
PP K A P P T+ + T P G L P+ +PPSP G +
Sbjct: 1179 PPSPKGGLATPSPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP 1237
Query: 93 RSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
+ P P SP GG A P PK
Sbjct: 1238 KGAPTTPAATPPSPKGG-----PATPPPK 1261
Score = 28.5 bits (62), Expect = 1.3
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 44 PPIQK---ARPHPGQTHTSVSLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAES 92
PP K A P P T+ + T P G L P+ +PPSP G +
Sbjct: 1156 PPSPKGGLATPPPKGAPTTPAATP-PSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSP 1214
Query: 93 RSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
+ P P SP GG A P PK
Sbjct: 1215 KGAPTTPAATPPSPKGGL-----ATPSPK 1238
Score = 28.1 bits (61), Expect = 1.6
Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 17/89 (19%)
Query: 44 PPIQK---ARPHPGQTHTSVSLTGGPVLAGKLLAKRPR--------SPPSPNGERGSAES 92
PP K A P P T+ + T P G L P+ +PPSP G +
Sbjct: 1133 PPSPKGGLATPPPKGAPTTPAATP-PSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSP 1191
Query: 93 RSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
+ P P SP GG A P PK
Sbjct: 1192 KGAPTTPAATPPSPKGGL-----ATPSPK 1215
Score = 26.9 bits (58), Expect = 3.7
Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 5/43 (11%)
Query: 79 SPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAPLPK 121
+PPSP G + + P P SP GG A P PK
Sbjct: 1132 TPPSPKGGLATPPPKGAPTTPAATPPSPKGGL-----ATPPPK 1169
>gi|41349482 proline-rich protein BstNI subfamily 1 isoform 1
preproprotein [Homo sapiens]
Length = 331
Score = 33.9 bits (76), Expect = 0.030
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 44 PPIQKARPHPGQ----THTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAP 99
PP K + P Q + ++ S G P + P+ PP P G P P
Sbjct: 255 PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQP 314
Query: 100 QQRPRSPVGGR 110
Q PR P GGR
Sbjct: 315 QGPPRPPQGGR 325
Score = 28.9 bits (63), Expect = 0.97
Identities = 24/75 (32%), Positives = 28/75 (37%), Gaps = 13/75 (17%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAESRSPT 96
PP Q G G P GK +P+ PP P +G S S+SP
Sbjct: 161 PPPQGGNQPQGPPPPPGKPQGPPPQGGK----KPQGPPPPGKPQGPPPQGDKSRSSQSPP 216
Query: 97 AAPQQRPRSPVGGRQ 111
PQ P P GG Q
Sbjct: 217 GKPQGPP--PQGGNQ 229
Score = 27.7 bits (60), Expect = 2.2
Identities = 24/75 (32%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAESRSPT 96
PP Q G G P G RP+ PP P +G S RSP
Sbjct: 100 PPPQGGNQPQGPPPPPGKPQGPPPQGGN----RPQGPPPPGKPQGPPPQGDKSRSPRSPP 155
Query: 97 AAPQQRPRSPVGGRQ 111
PQ P P GG Q
Sbjct: 156 GKPQGPP--PQGGNQ 168
Score = 26.2 bits (56), Expect = 6.3
Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 9/43 (20%)
Query: 76 RPRSPPSPNGERG-------SAESRSPTAAPQQRPRSPVGGRQ 111
+P+ PP P +G S RSP PQ P P GG Q
Sbjct: 67 KPQGPPPPGKPQGPPPQGDKSRSPRSPPGKPQGPP--PQGGNQ 107
>gi|41349486 proline-rich protein BstNI subfamily 1 isoform 3
preproprotein [Homo sapiens]
Length = 178
Score = 33.9 bits (76), Expect = 0.030
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Query: 44 PPIQKARPH--PGQ----THTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTA 97
PP Q +P P Q + ++ S G P + P+ PP P G P
Sbjct: 100 PPPQGGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAG 159
Query: 98 APQQRPRSPVGGR 110
PQ PR P GGR
Sbjct: 160 QPQGPPRPPQGGR 172
>gi|41349484 proline-rich protein BstNI subfamily 1 isoform 2
preproprotein [Homo sapiens]
Length = 198
Score = 33.9 bits (76), Expect = 0.030
Identities = 22/71 (30%), Positives = 28/71 (39%), Gaps = 4/71 (5%)
Query: 44 PPIQKARPHPGQ----THTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAP 99
PP K + P Q + ++ S G P + P+ PP P G P P
Sbjct: 122 PPPGKPQGPPAQGGSKSQSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQP 181
Query: 100 QQRPRSPVGGR 110
Q PR P GGR
Sbjct: 182 QGPPRPPQGGR 192
>gi|209571537 proline-rich protein BstNI subfamily 2 [Homo sapiens]
Length = 416
Score = 33.5 bits (75), Expect = 0.039
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 44 PPIQKARPHP---GQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQ 100
PP + P P ++ ++ S G P + P+ PP P G P PQ
Sbjct: 341 PPGKPQGPPPQGGSKSRSARSPPGKPQGPPQQEGNNPQGPPPPAGGNPQQPQAPPAGQPQ 400
Query: 101 QRPRSPVGGR 110
PR P GGR
Sbjct: 401 GPPRPPQGGR 410
Score = 32.0 bits (71), Expect = 0.11
Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRP 103
PP K + P Q GG G +P+ PP P G+ S SRSP PQ P
Sbjct: 134 PPPGKPQGPPPQ--------GGNKPQGPPPPGKPQGPP-PQGDNKSRSSRSPPGKPQGPP 184
Query: 104 RSPVGGRQ 111
P GG Q
Sbjct: 185 --PQGGNQ 190
Score = 30.8 bits (68), Expect = 0.25
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 11/68 (16%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRP 103
PP K + P Q GG G +P+ PP P G+ S +RSP PQ P
Sbjct: 196 PPPGKPQGPPPQ--------GGNKPQGPPPPGKPQGPP-PQGDNKSQSARSPPGKPQGPP 246
Query: 104 RSPVGGRQ 111
P GG Q
Sbjct: 247 --PQGGNQ 252
Score = 30.0 bits (66), Expect = 0.43
Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRP 103
PP K + P Q GG G +P+ PP P G S SRSP PQ P
Sbjct: 258 PPPGKPQGPPPQ--------GGNKPQGPPPPGKPQGPP-PQGGSKSRSSRSPPGKPQGPP 308
Query: 104 RSPVGGRQ 111
P GG Q
Sbjct: 309 --PQGGNQ 314
Score = 26.6 bits (57), Expect = 4.8
Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 13/75 (17%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERG-------SAESRSPT 96
PP Q G G P G +P+ PP P +G S RSP
Sbjct: 60 PPPQGGNQPQGPPPPPGKPQGPPPQGGN----KPQGPPPPGKPQGPPPQGDKSRSPRSPP 115
Query: 97 AAPQQRPRSPVGGRQ 111
PQ P P GG Q
Sbjct: 116 GKPQGPP--PQGGNQ 128
>gi|23200002 NOL1/NOP2/Sun domain family, member 5C isoform 2 [Homo
sapiens]
Length = 291
Score = 33.5 bits (75), Expect = 0.039
Identities = 29/107 (27%), Positives = 47/107 (43%), Gaps = 15/107 (14%)
Query: 11 PSPHIGQETTSISKLRRKGEVAGGLT-GLNSCHLPPIQKARPH------PGQTHT----- 58
PSP + S+ + + V L + L P ARPH PG H
Sbjct: 142 PSPRLVYSMCSLCQEENEDMVQDALQQNPGAFRLAPALPARPHRGLSTFPGAEHCLRASP 201
Query: 59 SVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRS 105
+L+GG +A + +R P S + + SA R+P+ AP+++ R+
Sbjct: 202 KTTLSGGFFVA---VIERVEMPTSASQAKASAPERTPSPAPKRKKRA 245
>gi|33286446 opioid growth factor receptor [Homo sapiens]
Length = 677
Score = 33.1 bits (74), Expect = 0.051
Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSP-----PSPNGERGSAESRSPTAA 98
P + A P + S S T GP AG + SP P P G G + SP+
Sbjct: 562 PGPRPAGPAGDEPAESPSETPGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSET 621
Query: 99 PQQRPRSPVG 108
P RP P G
Sbjct: 622 PGPRPAGPAG 631
Score = 31.2 bits (69), Expect = 0.19
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 56 THTSVSLTGGPVLAGKLLAKRPRSP-----PSPNGERGSAESRSPTAAPQQRPRSPVG 108
T S S T GP AG + SP P P G G + SP+ P RP P G
Sbjct: 514 TPGSPSETPGPSPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAG 571
Score = 26.9 bits (58), Expect = 3.7
Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 5/68 (7%)
Query: 44 PPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSP-----PSPNGERGSAESRSPTAA 98
P A P + S S T GP AG + SP P P G G + SP+
Sbjct: 582 PGPSPAGPTRDEPAESPSETPGPRPAGPAGDEPAESPSETPGPRPAGPAGDEPAESPSET 641
Query: 99 PQQRPRSP 106
P P P
Sbjct: 642 PGPSPAGP 649
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 33.1 bits (74), Expect = 0.051
Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Query: 47 QKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQ------ 100
++ P PG+ + G P L G + P PP GE+G +E +P Q
Sbjct: 1407 ERGPPGPGEGGIAPGEPGLPGLPGSPGPQGPVGPPGKKGEKGDSEDGAPGLPGQPGSPGE 1466
Query: 101 QRPRSPVG 108
Q PR P G
Sbjct: 1467 QGPRGPPG 1474
Score = 30.0 bits (66), Expect = 0.43
Identities = 17/54 (31%), Positives = 19/54 (35%)
Query: 65 GPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAP 118
GP L G+ P PP P G G R P P + G R E P
Sbjct: 1360 GPGLPGRKGDPGPSGPPGPRGPLGDPGPRGPPGLPGTAMKGDKGDRGERGPPGP 1413
Score = 27.7 bits (60), Expect = 2.2
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 64 GGPVLAGKLLAKRPRSPPSPNGERG 88
G P +AG+ AK P PP P G +G
Sbjct: 1507 GLPGVAGRPGAKGPEGPPGPTGRQG 1531
Score = 26.9 bits (58), Expect = 3.7
Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 42 HLPPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPP---SPNGERG--SAESRSPT 96
+ P QK P V G P L G+ A P+ PP + GERG A+ R +
Sbjct: 1250 YCPKGQKGEPGEMGLRGQVGPPGDPGLPGRTGAPGPQGPPGSATAKGERGFPGADGRPGS 1309
Query: 97 AAPQQRPRSP 106
P +P
Sbjct: 1310 PGRAGNPGTP 1319
Score = 26.9 bits (58), Expect = 3.7
Identities = 26/93 (27%), Positives = 33/93 (35%), Gaps = 1/93 (1%)
Query: 24 KLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKRPRSPPSP 83
K KG+ G GL P ++ P G P G+ K R PP P
Sbjct: 1443 KKGEKGDSEDGAPGLPGQPGSPGEQGPRGPPGAIGPKGDRGFPGPLGEAGEKGERGPPGP 1502
Query: 84 NGERG-SAESRSPTAAPQQRPRSPVGGRQELTE 115
G RG + P A + P P G + E E
Sbjct: 1503 AGSRGLPGVAGRPGAKGPEGPPGPTGRQGEKGE 1535
Score = 26.2 bits (56), Expect = 6.3
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Query: 70 GKLLAKRPRSPPSPNGERGS-AESRSPTAAPQQRPRSPVGGRQELTEAAP 118
GK + PR PP P G G +P A P+ P G + E E P
Sbjct: 2165 GKPGLQGPRGPPGPVGGHGDPGPPGAPGLAGPAGPQGPSGLKGEPGETGP 2214
>gi|169207217 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2790
Score = 32.7 bits (73), Expect = 0.067
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 32 AGGLTGLNSCHLPP---IQKA--------RPHPGQTHTSVSLTGGPVLAGKLLAKRPRSP 80
+ GL GL + LP +Q A RP P QT+TS + T PV P P
Sbjct: 2469 SSGLLGLATSVLPTTTVVQTAGPGRPLPQRPMPDQTNTSTAGTTDPV---------PGPP 2519
Query: 81 PSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAP 118
P G++ S+E R P A P + + L P
Sbjct: 2520 TEPLGDKVSSE-RKPVAGPTSSSNDALKNLKALKTTVP 2556
>gi|169207592 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.7 bits (73), Expect = 0.067
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 32 AGGLTGLNSCHLPP---IQKA--------RPHPGQTHTSVSLTGGPVLAGKLLAKRPRSP 80
+ GL GL + LP +Q A RP P QT+TS + T PV P P
Sbjct: 2385 SSGLLGLATSVLPTTTVVQTAGPGRPLPQRPMPDQTNTSTAGTTDPV---------PGPP 2435
Query: 81 PSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAP 118
P G++ S+E R P A P + + L P
Sbjct: 2436 TEPLGDKVSSE-RKPVAGPTSSSNDALKNLKALKTTVP 2472
>gi|169207014 PREDICTED: zinc finger homeobox 2 [Homo sapiens]
Length = 2706
Score = 32.7 bits (73), Expect = 0.067
Identities = 30/98 (30%), Positives = 40/98 (40%), Gaps = 21/98 (21%)
Query: 32 AGGLTGLNSCHLPP---IQKA--------RPHPGQTHTSVSLTGGPVLAGKLLAKRPRSP 80
+ GL GL + LP +Q A RP P QT+TS + T PV P P
Sbjct: 2385 SSGLLGLATSVLPTTTVVQTAGPGRPLPQRPMPDQTNTSTAGTTDPV---------PGPP 2435
Query: 81 PSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEAAP 118
P G++ S+E R P A P + + L P
Sbjct: 2436 TEPLGDKVSSE-RKPVAGPTSSSNDALKNLKALKTTVP 2472
>gi|27886561 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 1 [Homo sapiens]
Length = 1075
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 13 PHI---GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLA 69
PH+ G ++ + VA +TG S L PI G +H+ + T P +
Sbjct: 877 PHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITY-----GPSHSGSATTASPAAS 931
Query: 70 GKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEA 116
L + PPSP + +S S A P + + Q T+A
Sbjct: 932 HPLASSPLSGPPSPQLQPMPYQSPSSGTASSPSPATRMHSGQHSTQA 978
>gi|27886559 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 4 [Homo sapiens]
Length = 1045
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 13 PHI---GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLA 69
PH+ G ++ + VA +TG S L PI G +H+ + T P +
Sbjct: 877 PHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITY-----GPSHSGSATTASPAAS 931
Query: 70 GKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEA 116
L + PPSP + +S S A P + + Q T+A
Sbjct: 932 HPLASSPLSGPPSPQLQPMPYQSPSSGTASSPSPATRMHSGQHSTQA 978
>gi|27886555 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 3 [Homo sapiens]
Length = 1065
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 13 PHI---GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLA 69
PH+ G ++ + VA +TG S L PI G +H+ + T P +
Sbjct: 877 PHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITY-----GPSHSGSATTASPAAS 931
Query: 70 GKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEA 116
L + PPSP + +S S A P + + Q T+A
Sbjct: 932 HPLASSPLSGPPSPQLQPMPYQSPSSGTASSPSPATRMHSGQHSTQA 978
>gi|4758804 nuclear factor of activated T-cells, cytoplasmic,
calcineurin-dependent 3 isoform 2 [Homo sapiens]
Length = 1068
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/107 (25%), Positives = 42/107 (39%), Gaps = 8/107 (7%)
Query: 13 PHI---GQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLA 69
PH+ G ++ + VA +TG S L PI G +H+ + T P +
Sbjct: 877 PHLQSMGYHCSNTGQRSLSSPVADQITGQPSSQLQPITY-----GPSHSGSATTASPAAS 931
Query: 70 GKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSPVGGRQELTEA 116
L + PPSP + +S S A P + + Q T+A
Sbjct: 932 HPLASSPLSGPPSPQLQPMPYQSPSSGTASSPSPATRMHSGQHSTQA 978
>gi|47778921 alpha 1 type XIX collagen precursor [Homo sapiens]
Length = 1142
Score = 32.3 bits (72), Expect = 0.087
Identities = 27/92 (29%), Positives = 32/92 (34%), Gaps = 3/92 (3%)
Query: 18 ETTSISKLRRKGEVA-GGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLAGKLLAKR 76
ET + KG+ A GL G N P P G P L G L +
Sbjct: 338 ETGEKGEQGEKGDPALAGLNGENGLKGDLGPHGPPGPKGEKGDTGPPGPPALPGSLGIQG 397
Query: 77 PRSPPSPNGERGSAESRSPTAAPQQRPRSPVG 108
P+ PP G+RG P P P P G
Sbjct: 398 PQGPPGKEGQRGRRGKTGPPGKP--GPPGPPG 427
>gi|239754940 PREDICTED: hypothetical protein [Homo sapiens]
Length = 159
Score = 32.0 bits (71), Expect = 0.11
Identities = 31/102 (30%), Positives = 42/102 (41%), Gaps = 7/102 (6%)
Query: 5 PDSRRKPSPHIGQETTSISKLRRKGEVAGGLTGLNSCHLPPIQKARPHPGQTHTSVSLTG 64
P R +P+ + RR GG G + LPP + R P + +
Sbjct: 58 PAPRERPAAARLSALAAAQPRRRSPGPQGGGGGDIASPLPPALQPRGAPA---VPAAPSP 114
Query: 65 GPVLAGKLLAKRPRSPPSPNGERGSAESRSPTAAPQQRPRSP 106
GP+ A + P SPPSP +A+S P P Q PRSP
Sbjct: 115 GPLPARP--SSPPPSPPSPPVP--TAQSSLPAPWPPQGPRSP 152
>gi|160707881 formin 2 [Homo sapiens]
Length = 1722
Score = 32.0 bits (71), Expect = 0.11
Identities = 28/88 (31%), Positives = 34/88 (38%), Gaps = 3/88 (3%)
Query: 33 GGLTGLNSCHLPPIQKARPHPGQTHTSVSLTGGPVLAGKLLA--KRPRSPPSPNGERGSA 90
G GL+ L P A PG T +L+ L L A + P+ PPSP G S
Sbjct: 244 GAFLGLDRFLLGPSGGAGEAPGSPDTEQALSALSDLPESLAAEPREPQQPPSPGGLPVSE 303
Query: 91 ESRSPTAAPQQRPRSPVGGRQELTEAAP 118
P A P + SP EA P
Sbjct: 304 APSLPAAQPAAKD-SPSSTAFPFPEAGP 330
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.309 0.129 0.379
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,274,189
Number of Sequences: 37866
Number of extensions: 363088
Number of successful extensions: 2952
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 261
Number of HSP's that attempted gapping in prelim test: 2306
Number of HSP's gapped (non-prelim): 872
length of query: 121
length of database: 18,247,518
effective HSP length: 89
effective length of query: 32
effective length of database: 14,877,444
effective search space: 476078208
effective search space used: 476078208
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.